Array 1 1864-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCP01000027.1 Thermogymnomonas acidicola JCM 13583, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1863 29 100.0 36 ............................. CTTTCGTCACCCTCGATATGTAGTTCATATCGTAGG 1798 29 100.0 37 ............................. ACGGTCAGGAAGGCCAGCCAGGAAGGCCAGCCAGGAC 1732 29 100.0 36 ............................. TTTGTATCTTATTCATTTCTTTTCACCTCCAATCAA 1667 29 100.0 36 ............................. TCTGAAATCGTTGTACCAATGGTACATTTCATGAGA 1602 29 100.0 38 ............................. AAGAATTGATTTAGCTCAAAAACACTTATAAGCGGCAA 1535 29 100.0 35 ............................. ATCAGTCGGTCATTCAAAAGATGGCGTACCTCGGC 1471 29 100.0 35 ............................. TGGAAGTTCAGGCGTCCCAACAAAAATAAAAAAAA 1407 29 100.0 36 ............................. AAAACCGAATGGAAAAGAAAAAGGAACCGAATTGGG 1342 29 100.0 38 ............................. TGGGTCCTCGAGGCGCAAGGGAACGGCTGGCCCCATAT 1275 29 100.0 36 ............................. GTTCGGAAATTGGACAGTCCACGCCGCATTAGTCTC 1210 29 100.0 38 ............................. GCCTGAAATGGTCCTTCTTCGATATGGCTATTCTGCGG 1143 29 100.0 35 ............................. AGGAACGTCTCGGGACTGACAGGAACCTCAATCAA 1079 29 100.0 41 ............................. GGGGGGCCCTGCAGGGCATAACAGGAGGTCGAGGTCGACGA 1009 29 100.0 36 ............................. CTTCTTCTGCCTTCATGGTCAGCGTCATGAGATCCA 944 29 100.0 38 ............................. CATAAGGTCTGTTCATAATTGGCGTTCCTGTGAGTAAG 877 29 100.0 35 ............................. TTTACATAGTTGCTTATGAAAGTAAGATTGTTCAA 813 29 100.0 38 ............................. TAAGCATGCCCGTCAGCTGTAACTGTTAGAGATAAGGA 746 29 100.0 37 ............................. TGGGTCTCCTCCTCTGACCTAGGGATTTCTCGAAGGC 680 29 100.0 37 ............................. GAGGTCGAGGAGCCCTCGGCATTGACGAAACCAAAGA 614 29 100.0 36 ............................. CAATTGTGCAATAATATACAGTTTTTTTATAAATTA 549 29 100.0 36 ............................. CATAGCCCGTCGTCACATAATTCGTGTATCCGAGGA 484 29 100.0 38 ............................. GACAAATTGCCCAAAATGATTAGAATTGAGACGATTAG 417 29 100.0 36 ............................. TAATTTCTGGCTCGCTTTCACTGTTGTCGTGGCTGC 352 29 100.0 37 ............................. TTAAACGAGGAGGAAAAGCAAAAATTTCCTAAAAGGA 286 29 100.0 35 ............................. TATTATAGGAGGGTGGTAAAATGTACGAATGTAAG 222 29 100.0 41 ............................. TTAAAAGCTGATGCAGGTGCAGAAACACCCCCCCAAACTAT 152 29 100.0 35 ............................. TCGTTTATATACTGATCTCTGAGGTTTACATCTGT 88 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 28 29 100.0 37 GTAAAATAGAACCTAAGTAGGATTGAAAG # Left flank : TCCCGAAAAAAGTTTGAATTACGCTTATATGG # Right flank : GCTCAGATATCGGCATGGGAGCAGAATCCATCGGAAGTAAAATAGAACCTAAGTAGGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAGAACCTAAGTAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 3957-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCP01000022.1 Thermogymnomonas acidicola JCM 13583, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 3956 29 100.0 37 ............................. ATCGTGTCTTACTCACTCTATGTTTTATGATTAGCGA 3890 29 100.0 39 ............................. TACACTTCCTGATATATTTACAGTATTTCCAATGTTTAC 3822 29 100.0 37 ............................. CTGGAAAATCTACACTTTTAGGATATTTTATTAAAAA 3756 29 100.0 41 ............................. TGGGGGGGTTATAGGACATCAGAACCTCACCTCGTACGTCT 3686 29 100.0 38 ............................. GGCTATATCCAATTCTAACGATGTATCACATATATTAA 3619 29 100.0 39 ............................. TATTCGATTTAGCCCCCCCTTTTGTTAGATGTATAGGAG 3551 29 100.0 40 ............................. ATAATATTTTTCACTCTCGTTCCTAATAACGAGACAAAAA 3482 29 100.0 38 ............................. TTCTTTAAACCACCCCCCCAATGATAGGTTGCAAATAC 3415 29 100.0 36 ............................. ATCAATTATTATATTTCCTGATCCGTTTGCAATCGA 3350 29 100.0 36 ............................. TGATGGAAATGAATATCGTCATGGACAAACAAAAGA 3285 29 100.0 38 ............................. ATTTATTCCATTCCTCAGGACTATATTTATATTCAGAA 3218 29 100.0 38 ............................. TAAATTGACCACAATAGATAGCTATCAGGTTCATGGAG 3151 29 100.0 39 ............................. GGGGATCAGCATCTCGACGCTAAATGGTATCATGAATTG 3083 29 100.0 38 ............................. ATTTGATATTGATGGTAATATATTGCCGATCCAATTCC 3016 29 100.0 36 ............................. TTGTCGTTTTCCGGTATCGTTCTGGATAGGTTTTAT 2951 29 100.0 35 ............................. AGCCTCTTCTGTGCGATCTCCTTCGCCCGCTCCAT 2887 29 100.0 35 ............................. TCGATTATAATGCAATTCATTTCCTCTTTTGCTAA 2823 29 100.0 37 ............................. TCGTTCTCGCTTTCTAAAACAGGTGTGGATATCCAGG 2757 29 100.0 34 ............................. GTCCTGGGACTACTGGTTAGCGGCGTTGCTACGG 2694 29 100.0 38 ............................. CTTTTGCCGGTGCCGCTTCCCCCCGCATATTAGGATGT 2627 29 100.0 37 ............................. AGCAAACACGTCCTCCCAGCACATATCCTCCCAATCA 2561 29 100.0 36 ............................. ATGTGGAAATATAAATATTCCTATAAATTCAAAAGG 2496 29 100.0 35 ............................. CCTGAATAAAAATCAGGTCGTCAATGACCCATTCG 2432 29 100.0 38 ............................. TTCTCGTACAAGGGTGAGATGCGGGCAATCGTTTTTAG 2365 29 100.0 38 ............................. GAACTCACCTGCATCCATCAGTAAGGCCTATTTATCGA 2298 29 100.0 36 ............................. ATGGGCTTTATAAGGACACGTACACCGGCGACGAGT 2233 29 100.0 35 ............................. AGAGTGTGGGTATGCTATAGATGCGGGTCGGAGGA 2169 29 100.0 36 ............................. TTTCCAGTTAAAATCATAAACTATTTTGTTATCCAT 2104 29 100.0 36 ............................. TAGTATAATCCATCCATGTATTGAGTTGTGGGTAAA 2039 29 100.0 36 ............................. ATGCTGTGAATATATATCGGCTATCTGCTCGTCTGT 1974 29 100.0 35 ............................. TTAAGCTGTTTTTTATCGATTTTATCGACCTCCAT 1910 29 100.0 37 ............................. CCGTCTTCTCTCTGATACCCAGATACATATATTTTTC 1844 29 100.0 36 ............................. GATTATGCTGGCACATTTTTGAAGGATACTGAAAAA 1779 29 100.0 36 ............................. GTAGAGCCATTCGAGGAGGAGATTGAGATAAAGCTG 1714 29 100.0 36 ............................. ATCCTGTAATTGTCCCGGAGACCCGGTAACGTCCGA 1649 29 100.0 37 ............................. AATGCACAAGGGCAAAAAACCCTTTCGGTTCAATTCG 1583 29 100.0 37 ............................. CTTTGCATCCACGGCGAGGATTTTGGCAGGCTATCCG 1517 29 100.0 39 ............................. AACGCCGTGAGCGGCACCTATTCCTCCGCCGGTGCAGGA 1449 29 100.0 37 ............................. ATCCTCCTTAGCCTCCTCAATCTCCTGTTTGATATCC 1383 29 100.0 36 ............................. GAAAAGAAAAACGAGAGGAAAAAGAAGACAAGAGGA 1318 29 100.0 37 ............................. AATTCTATTGCCCTTTTGAGAGATTTGTTTTTAGCTA 1252 29 100.0 35 ............................. TGTTTATATTTCCCAAAAATGTATCTCGTAAGATA 1188 29 100.0 38 ............................. GCAATCTTAGGTACATTAGTTGCTATTGCACCACCTAT 1121 29 100.0 34 ............................. TCGCAGTGAAAAGGAAGTATATTTGAAAGAAGAA 1058 29 100.0 40 ............................. GGGGGGTGCAGTCGATCGAATGAATGAAAAATCGAAAAAG 989 29 100.0 38 ............................. TCGAGGGAATTGCCGGCCGGGACGAGGACGGGGGGGTG 922 29 100.0 36 ............................. TTGAAATAGTTAAAGGTATCTATAAAATGAATATTC 857 29 100.0 35 ............................. CAGGATTAGGACGAAAAAGAAATCAGTTGAGAGGT 793 29 100.0 35 ............................. GTAGGGCTTTCTTTTCCATTCGGGAAATTTCTTTC 729 29 100.0 36 ............................. TCATAAGACCACCCCCCCAATTTAAAAAAATTTCAG 664 29 100.0 35 ............................. TGACTTCGTCCAGCAGTCCCGGCTATTCCTATATA 600 29 100.0 38 ............................. CTTAACGAGGCACTTTATTATTGGGGGGGTGCAATTGA 533 29 100.0 38 ............................. ATTGGAGAACGGCCTAGGAATAATCTTAAGGTTGAGGG 466 29 100.0 37 ............................. CCATTTTTTATTTATATCTTTTGTCGCACACAGACGC 400 29 100.0 40 ............................. GGGGGGCCTGCTTGCGTTGGCCGTTGCCAGCCTCATGGTA 331 29 100.0 38 ............................. GGAACAATCGGCGCTCTCGATAATCGCTTTAATTTCTG 264 29 100.0 39 ............................. CCACCGTCGAGCGATACCTCGCCAGGCTTCATAGGGGGG 196 29 100.0 37 ............................. CATGGAGATGGCCGCAATCCTAAATATATTCGAATAG 130 29 100.0 37 ............................. AAGCTAATATGATGAAAGGCATTTACTCGAACCGCAC 64 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 60 29 100.0 37 GTAAAATAGAACCTAAGTAGGATTGAAAG # Left flank : GGCCTGTCGAGCCCGTGACATGGGTTCAAATCCCGTCCGGGGGGGCGCTCAAACGATCGGCCTTTCAACCTAAGGCTTCTGTGGAGATATTCCTGTGTGGCATTGCGAAGTAATCTATTAATCGCTAAAGATATCACCACCATACTTATTGAAGTCAGAATTGTGTAGTTAGTTGAGAACTCGGACATTCCCGGTCAATGAAGTTGGGCCTGTATGAGTTAGAATCGTATATTTAGTTGAGAACCTAAGGGTTGAGAACCTATGAAATCACTTTGGCCTTACCTCTGTTGAAGGGATATCTCAATATGGCTTAAGGAGTTTATAAGAGAAATACTAGTTGCGCCTGAGCGGGTATGTCTTAAATGACTCTTTATCTGATATGGTATCGCTCAAGAAATGTACAGATCCTTTATATACTCACCCGAGAACCTCCGGTTATGTACGTTTTACGAACTTCGAAGCTAAGGATAATATAGTCAGTAACTGATCATCTTAGCCGG # Right flank : GTGTGTGCGCGTATCTGCAGACGGTACGATCAAGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAGAACCTAAGTAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 43-3846 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCP01000004.1 Thermogymnomonas acidicola JCM 13583, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 43 29 100.0 36 ............................. ATTGCATCCCAATCCGGTTCTATCTTTCAATCTTGT 108 29 100.0 35 ............................. TCTATAACGAGGACGAGGTACTTAACGAGGCGCTT 172 29 100.0 34 ............................. ACCGTCACGCTCCAAGCGACCGCCGGTGCGCCTG 235 29 100.0 39 ............................. TTTGCCATACCATTTCAGACCGGCCCCTGCTAGGGCCAG 303 29 100.0 38 ............................. GAGAAGGGCCTTTCCGATCTCTTTCTCATCGAGGGCCT 370 29 100.0 37 ............................. TGCACGCCTGCACCCATGGATAAAAAGGTTTTCATTT 436 29 100.0 35 ............................. TTCTACTGATACTCTCTGCAAGTTCAAAAAGTGTA 500 29 100.0 36 ............................. GAATTTTATGCACGAATTGTAATTATGTGGTAGGCA 565 29 100.0 36 ............................. AAAACAATGAGGAATTACAGATCGATAGAGAGAAAA 630 29 100.0 37 ............................. AAAAGATAGGAAGGCATTTTCATAATGGTGATAAAAA 696 29 100.0 39 ............................. TGGGAAGCCGATACGAGAGGGGGGCAATTTGCATCAGAT 764 29 100.0 37 ............................. GTACACTACTCATCAAACTCACCTTCTAGGTCTACGT 830 29 96.6 42 ........................C.... AAGAATTCCTAGGGAGCGGGCCTTCTCTATTATGGAGGGGGG 901 29 100.0 36 ............................. ATCCTCCTTAGCCTCCTCGATCTCCTGTTTGATGTC 966 28 96.6 37 ....................-........ ACCATTATGACCACTTATTTTTATTGTGACGGGTCGA 1031 29 100.0 38 ............................. AAGGAAAAAGAGGGGGGGTTGGGCCCGATCAATGGAGA 1098 29 100.0 40 ............................. GACGAAGATTGAGCCCCCCCATTTCCAGAAATGCTTGAGA 1167 29 100.0 38 ............................. TGACTGTGTCAGCTTGACAACCAGATGGTCAGTTGCAG 1234 29 100.0 36 ............................. AGAAGCGATCTGACCCTATTGTCTCCCTTTCTCCAT 1299 29 100.0 36 ............................. CCATTTTTATTTATATCTTTTGTCGCACACAGACGC 1364 29 100.0 39 ............................. GAGGCCGTGCCAGAAATCTTGCGAGTCCTGTTCGAATAG 1432 29 100.0 38 ............................. GGAACAATCGGCGCTCTCGATAATCGCTTTAATTTCTG 1499 29 100.0 37 ............................. ATGGTCGCGTACACTGTCCCGCTGGCCCTGAGGCGAA 1565 29 100.0 38 ............................. AAATTCGTCTTCGGCTTCGTCAATGCAACCGGATCGAG 1632 29 100.0 35 ............................. ATCGATAAGAATGGCCATAAGATGAGAACCACGAT 1696 29 100.0 36 ............................. GCTCGGCGAAGAAAAAATTTCGTCGTCCTCCCTCGA 1761 29 100.0 38 ............................. TTCTATCGAGTCAGTCGAGAGAATATCGAGAGGATGCA 1828 29 100.0 36 ............................. CCAAATGTCCTCCGAATCGACGGAAACGAGGGGGGG 1893 29 100.0 37 ............................. CTACGTCCAATCTTATGGACTTTGCCAATCCTATAGT 1959 29 100.0 37 ............................. ATATTCGGGCTCTATTCCCTCGATGTAGGCCAGCATC 2025 29 100.0 39 ............................. GAGGCCGTGCCAGAAATCTTGCGAGTCCTGTTCGAATAG 2093 29 100.0 37 ............................. GGCTATTGATCGACCGGTTTTTTTCCTGTACAAATCG 2159 29 100.0 38 ............................. AAATAGTGGGGGGTCTCAATTTTTATCGGATAGTTTGA 2226 29 100.0 37 ............................. CCAACTATTCGATCCTCGTCGTTCCAGGTCAGTTTGG 2292 29 100.0 37 ............................. AATGGTGCATGCTATTCCAACTGCCTGGGCGCAGGGG 2358 29 100.0 35 ............................. GTGACGGTCGATATCTTATCCAGATTGAAAATCAT 2422 29 100.0 39 ............................. TGAGAAAATAATGTTAGCCCGCTCCATTGGATCGCAGTG 2490 29 100.0 37 ............................. ATCCTATGGCCTCAATGACTTCCTCGACGACCTCCTC 2556 29 100.0 38 ............................. TTTGCCATACCATTTCAGGGCTGCGCCCCCGAGGGCTG 2623 29 100.0 39 ............................. CCATCTAATCCCGGATCTCCTAGAGGCCGGGGGGGGTCT 2691 29 100.0 39 ............................. CCCTTTTTCATCCCAGCCATGGGCATGTAGCAATTTTGG 2759 29 100.0 38 ............................. CGAAATTCGTATTGGTGGTACGAAATTCGGAAAAAAGG 2826 29 100.0 39 ............................. TAACATAATATTGAGACAACCCCCCCAGCCAATCAAATT 2894 29 100.0 36 ............................. GCTTTATCACACTTTTTGATGCAGGTGCAATCATGA 2959 29 100.0 37 ............................. TAGAATTTCATGCCTCTGCCTCCGCTTCGTATTCTAT 3025 29 100.0 34 ............................. TCTTATTCAGAGGAAAATGAGCCGCAATATGCAG 3088 29 100.0 36 ............................. TTCCATACTGCATGCAGAAGGATTGCAAGTGCAATA 3153 29 100.0 40 ............................. TTGGGGGGGATGCCTCCCGGACAGCCGTACTGATCGCAGG 3222 29 100.0 38 ............................. TTCTCAAAGAATCAAAAGAGAGATTCTGGAAGATAAAG 3289 29 100.0 39 ............................. AAAAGTATCCGAAACTCCTTCATGCCCATGGCTGGGATG 3357 29 100.0 36 ............................. GTTTCGTTCTGGGTTCTGGACTGGTCGGTAAGAAAC 3422 29 100.0 38 ............................. ATTTATACTGATACTGATAGCTTTTTGTTGTTAACAAA 3489 29 100.0 37 ............................. AGAAGGAGAAGTGGAAAGCTAAGATCCGGGGGCCGAT 3555 29 100.0 37 ............................. AATATGAACTTTAGGACCTCTTCCCACACAGGTGCAA 3621 29 100.0 37 ............................. AAAAAAAATGGAAAAGAAGACGGCACACGACCAGATA 3687 29 100.0 36 ............................. CCGGATGACACGGGCGGTAAGATCCTTATTGAGATA 3752 29 100.0 37 ............................. GCAATAGGACATGTTCATTATTTGTCCATCGAATGAA 3818 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 58 29 99.9 37 GTAAAATAGAACCTAAGTAGGATTGAAAG # Left flank : GAAAGTATTCAGGTATTTCGATTTCTACATATGCATAACTACG # Right flank : GCGCATTCATGCTCCAGTCTAGGAGTATGCTTGTTGGGCAGGAAAATAGAACTTGAAAAAGACTAGAGGAAATTGAGCTCCGGCCATCCTACAGTGAAGATCAAAAGTTCACACAGTGACATTTGACATTATCCATAGATGTTCTGCTCTAGGCATGGATTACTCCGTCTCATATCACGTTCTCATGTCTAACTCTGCTCTCGCCGATAGTTATCCTGCGCACCGTTTTCCTGCTCCTCAGGATAAATATATCGAGAACCTCGCTCTCTCTATCAATCTCACCCTTCAGTTTATCCAGCAGTATTCTCAGGTTTCCCAAAGTTATATCACCCATGAAAACAGAGTTCTGAATGTGTAAAAGGTAAGGTTTGCAGATCTTGGATATCCTCGCATCCTTTGAGGCATTGACATCATAGACAAGGACAACGAACATGCCTATCTCCTCGCAACGTAAGGTTTGTATGGTTCACCCTCAAGGATGTACCTCTCCAGCTTGTACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAGAACCTAAGTAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 2 13858-14149 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCP01000004.1 Thermogymnomonas acidicola JCM 13583, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 13858 29 100.0 37 ............................. TCGAAAAGATGGAATGCCTTCCTAACGCGCCTGGCAA 13924 29 96.6 37 ................T............ GAGGACTTCACGGACAATCCCAGGAACACAAAAATAT 13990 29 100.0 37 ............................. TTCACCATGTCATCCTCGAACCACCTTTCTACGGAGG 14056 29 96.6 35 ...........T................. TTTGAGGGCAATCGCGGACCTTTTGCCTCTCATGT 14120 29 96.6 0 .....................G....... | A [14127] ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.0 37 GTAAAATAGAACCTTAGTAGGATTGAAAG # Left flank : GAGGAGGGAACAATCACTCAAGGATCTCGGGGGGGAAGAGAGCAACATATCCATATTCTCTTTCATCGATCTGAGGCCTTATTACAGCTACGTTTACCTTGACCATATGGACAAAATGATACTGAAGGCCATTGCTTCCGGCAGCCAGTCTAGTAACGAAATACTGAGATTTGTCCATAGATCCCTGGAGGAGCATTGGAGGATTTCCCTGAGGCTGATCCAGATGAGGCTGAACTCCCTTGAGCAAATGGGGGGGCTCATAAGAAGTTATAGATCAGGAAAATCAAAGAATTACCTGGTATCTGATAACTTGACCAAGATCATAGACATCTCAGGTTTTCTCGGTACATAGAAAGCCAGGATAACATAATTCCCTTAGAATTCCAGAACCTGGTGCGCAGAAAGCCAAGATCTTTTCAGAACCCCCAGGGCACCCTAAGTAAGGATTCAAGGGTCTCGTGCCTAATTATGCTGAACTGATACGATTAATTTCAAAGATA # Right flank : GATAAGAAATAGATCTGCAAGCAGTAACGGGCCTAAAATATCGCTATTAGAATGGAGCCCCCCCTGTGTGATTCAAGGTTCCAGGGAAAACGGGGGGAAAGCTGTCCAGGATTACCTTAAAAGGGACTCAGGAGAGACTGAAATTGACACCGCTTCATTTCAACAGATAGTGACTACCCCTGCACAGAACCCATGTCACCCAGATAACCCATGTCTATTATCCCGAACTCCTCAGATATCGAGAATATCCTGAACTTCTTCGGATCGACCTTCCTGAGGGCCGGGGGGGTGAAGTGCTCCTCAGATATGAGGGACGTGAGCACGTCCGTGCCTGAGGAGTAGAAGCTCATTGATGGAGTGATTATGACTCCCTGCTCCGCATTGACCGGGAAGGCGGGCATCTTAAAGACTCCCCCCTACTTTGTCCCTCAGCACCACCGATGGGTGCTCGTGGCCCAGGATCGTTATCTTCTTCAGGCCCCTGTCCCTGTCTCCGTGGT # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAGAACCTTAGTAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //