Array 1 5661-7397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBN010000006.1 Salmonella enterica subsp. enterica serovar Reading strain CQ2-72 YZU1242_006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5661 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 5722 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 5783 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 5844 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 5905 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 5966 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 6027 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 6088 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 6149 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 6210 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 6271 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 6332 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 6393 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 6454 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 6515 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 6576 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 6637 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 6698 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 6759 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 6820 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 6881 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 6943 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 7004 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 7065 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 7126 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 7187 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 7248 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 7309 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 7370 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGCGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23659-25867 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBN010000006.1 Salmonella enterica subsp. enterica serovar Reading strain CQ2-72 YZU1242_006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 23659 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 23720 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 23781 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 23842 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 23903 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 23964 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 24025 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 24086 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 24147 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 24208 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 24269 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 24330 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 24391 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 24452 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 24514 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 24575 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 24636 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 24698 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 24759 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 24820 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 24881 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 24942 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 25003 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 25065 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 25167 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 25228 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 25289 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 25350 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 25411 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 25472 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 25533 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 25594 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 25655 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 25716 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 25777 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 25838 29 96.6 0 ............T................ | A [25865] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //