Array 1 523753-524493 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029372.1 Listeria monocytogenes strain 2018TE5305-1-4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523753 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 523818 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523883 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 523947 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 524013 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 524077 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524140 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524204 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524269 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524333 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524399 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524422] 524465 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2631672-2629654 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029372.1 Listeria monocytogenes strain 2018TE5305-1-4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2631671 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2631605 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2631539 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2631473 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2631407 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2631340 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2631274 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2631208 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2631142 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2631076 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2631010 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2630944 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2630878 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2630812 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2630746 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2630680 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2630614 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2630548 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2630482 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2630416 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2630350 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2630283 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2630217 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2630151 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2630085 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2630019 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2629953 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2629887 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2629821 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2629755 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2629689 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //