Array 1 97127-96123 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVOV01000065.1 Escherichia coli strain swine72 swine72_contig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97126 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 97065 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 97004 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 96943 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 96882 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 96821 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 96760 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 96699 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 96638 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 96577 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 96516 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 96455 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 96395 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 96334 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 96273 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 96212 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 96151 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTGATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124075-122826 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVOV01000065.1 Escherichia coli strain swine72 swine72_contig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124074 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 124013 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 123952 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 123891 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 123830 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 123769 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 123708 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 123647 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 123586 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 123525 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 123464 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 123403 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 123342 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 123281 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 123220 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 123159 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 123098 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 123037 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 122976 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 122915 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 122854 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //