Array 1 9044-8889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMIZ01000014.1 Streptomyces sp. Root264 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 9043 33 100.0 28 ................................. CACCTTCGGCGTACCCGTCTTCCGCGAC 8982 33 81.8 28 ...............G..G.....C.T...A.G CCCGGATCGCCGGGCTGCTCGAGGACCG 8921 33 69.7 0 ...............G..G..TGC...GCC.AA | ========== ====== ====== ====== ================================= ============================ ================== 3 33 83.8 28 GTCCTCCCCGCCGACACGAGGGTGTTCCGGCCT # Left flank : GGGGAGCGGGGTGCATCGGCGGTGTCCTTCCGGCGGCAGGGGCGCTGTGGCGGCGTGGGGCCGTCGGATTAGCCGCCGTCGACCGCGTCCGCGACAAGTTCGGCTCTCGCGTCATCGGCCCGGCGACCGTCTTCCGCCGCGCCTCCTGACCCCACCCGGACTTCCGCTCCTATCTGCCGCCTGAATCGACCCGGGCCACCGGCTTCCAGGGGAGGGCGTCGTTCCGAGGCACCACGTGACGGGGCACCCTTAAGGAAGATCCCCGCGTCGGCGGGGAGGACAAAGTACGGGCGCGTCGACATCCTCACCGGCGGCGGAACACCGTCGCGTCGGCGGGGAGGACGATCACTTCCTCGACCCGAACAACCGTCGGATCGGAACACCCCCGTGTCGGCGGGGAGGACGCCAGCGCGTCATCGATGGCGCCGATGTTCGCCGGAACACCCCCGCGTCCGCGGGGGTGTTCCGACGTTCATGTTGTGGTTGCTGCGGCCGGGCGG # Right flank : GCCGGCTGCCGCCGAAAGCATTCGCGGGAACGGGTAGTGCCGGTGCCAGCTCTCTTCTGCCGGATCTTGGAGGGTCGGCCTGCGGTCGGGCACGGTGGGGGTGGAGGCGGCGTAGGCGGGGAGTTCGGCGGCGAGGCGGCGGTCCTCAGAAGCCTCACTCAGACGTGGCGTAGATTCCGCTGGAGCGGTCCCTGCCAGGCCTGCCCGGCGATACCGTGGTGTTCAAGACGACCTGGCATGCCAGTGGAGGCCCTGGTGAGCGAACAGCCGAACACCGTCGACACCGCCCGGCAGCAGCTGGAGCCCGCGGCCGCCGAAGCAGTGCGTGCCTATGCGGCCAAGACGCGTGCCGACGCCGATCGGTTTGCCGCCGTCCTGGAAGACATCGCCGCTCACGGGCTGCCGGCGGTGGAGACCTGCACGCCGTGGGAGGAACTGCGCGAGGCCCATCTCGCCCGCCTCACCGGCCAGCGCCAGGCCGTCGCCTGATGACATTCCCG # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.19, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACACGAGGGTGTTCCGGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9140-9295 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMIZ01000014.1 Streptomyces sp. Root264 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 9140 33 100.0 28 ................................. GACGGTTGTTCGGGTCGAGGAAGTGATC 9201 33 81.8 29 ...............G..AC.........CCG. CGGTGAGGATGTCGACGCGCCCGTACTTT 9263 33 75.8 0 ...............G.....A.C....TTAAG | ========== ====== ====== ====== ================================= ============================= ================== 3 33 85.9 29 GTCCTCCCCGCCGACACGGGGGTGTTCCGATCC # Left flank : CTCCACTGGCATGCCAGGTCGTCTTGAACACCACGGTATCGCCGGGCAGGCCTGGCAGGGACCGCTCCAGCGGAATCTACGCCACGTCTGAGTGAGGCTTCTGAGGACCGCCGCCTCGCCGCCGAACTCCCCGCCTACGCCGCCTCCACCCCCACCGTGCCCGACCGCAGGCCGACCCTCCAAGATCCGGCAGAAGAGAGCTGGCACCGGCACTACCCGTTCCCGCGAATGCTTTCGGCGGCAGCCGGCTTGGGCGAAGCACCCCGCGTCGGCGGGGAGGACCGGTCCTCGAGCAGCCCGGCGATCCGGGCGTCCGAAGCACCCCCGCGTCGGCGGGGAGGACGTCGCGGAAGACGGGTACGCCGAAGGTGAGGCCGGAACACCCTCGTGTCGGCGGGGAGGACCCGCCCGGCCGCAGCAACCACAACATGAACGTCGGAACACCCCCGCGGACGCGGGGGTGTTCCGGCGAACATCGGCGCCATCGATGACGCGCTGGC # Right flank : GGGTGCCCCGTCACGTGGTGCCTCGGAACGACGCCCTCCCCTGGAAGCCGGTGGCCCGGGTCGATTCAGGCGGCAGATAGGAGCGGAAGTCCGGGTGGGGTCAGGAGGCGCGGCGGAAGACGGTCGCCGGGCCGATGACGCGAGAGCCGAACTTGTCGCGGACGCGGTCGACGGCGGCTAATCCGACGGCCCCACGCCGCCACAGCGCCCCTGCCGCCGGAAGGACACCGCCGATGCACCCCGCTCCCCTGCCACCGAAGCGCTGACGGAGTTCACTCGCGGCAGACAGCGCCGGCCGGGGCGACGGCGCGCGGGCTGGCGTCGGGGCCGCCGGTGGAACTTCTTCAAGATTCTTCGGAGGGGGACCGAACAACCAGGCCCTTCACCGGCACTTGCAGGGGGAAGCTGGTCAACCGGACCAGCCGCAGGCGCCCGGAGGGACCCGTGCTCAAGAACAACTCGACTCACTGCCTCGGCTGGTGCGAGGACAGCCAGGAGGC # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACACGGGGGTGTTCCGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 61744-60171 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMIZ01000014.1 Streptomyces sp. Root264 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 61743 28 75.9 176 ..CA.......-......AC..A.A.... GCCGTCCCCCGAAACGAGCCGACCAACCACGGCTCCTTCCGGATGGAGCAAGGCGGCCAAACGGCGACGCTTCGGAAAGGCATGAAGGAGATCAGGGCGGTTTGGGCTGAATAACGGATTCTGAGAAAGTGCTCTGTAATCCAGCACTTCCGAGGTAAGAGACCAGGTCAAGCAGT A [61737] 61538 29 100.0 31 ............................. CCCCCTCCGGGGGTGCGGGGTCCGGGGACCG 61478 29 100.0 32 ............................. GACGCCATTCGCGTCTGCCTCCGCATAGGGTC 61417 29 100.0 32 ............................. GCAGCGATGCGTCTCGTCGACCGGGCGCCCGT 61356 29 100.0 32 ............................. GGCAGCAGGTAGGCCTCGCCCGCGGGCCCGCC 61295 29 100.0 32 ............................. CGCTCCAGGACCGTGCGCCGCTTCACGGCCGA 61234 29 100.0 32 ............................. TCCGCGGCGGTGACGTTCGCCGCGGACGGCCC 61173 29 100.0 32 ............................. GCGCCCGTGAAGCCGTGGATGCGCGTCAGGGC 61112 29 100.0 32 ............................. CAGCGCACGGCCCCGGTCGCGGAGTTCGGCGC 61051 29 100.0 32 ............................. TTCTGCGGGCTGATCGCGAACGCCACCGTGCA 60990 29 100.0 32 ............................. CAGGCTGGGGGGCCGTCCCCTTGCCCTGCGAA 60929 29 100.0 32 ............................. ACGCGCTCGGCCGGCGGAATGAGAGACCAGTC 60868 29 100.0 32 ............................. CGTCGTCATACAGGTCCCCCTGTCTTCCGGAG 60807 29 100.0 32 ............................. TGCTCGGGGAACGACTTGCGGGTCGCGTCGTT 60746 29 100.0 32 ............................. TACATCCCGTCCTGGACCGGGCCGGCCTCGGC 60685 28 93.1 32 ........A-................... TTGGCGGCGAGGGCGCGACCTGCCTCCGTGAT 60625 29 100.0 32 ............................. ATGCGCCGGCCGCGTCCATGCAGCTGCGCGAG 60564 29 96.6 32 ............................G CCACCGGCCGTCCCTGCCGGACCGGCACAGAC 60503 29 100.0 32 ............................. ATGCGGCGCGAGGCCGAGAAGGCCACCGCCCG 60442 29 100.0 32 ............................. AGGGAGGCGTTGTAGCCGCGCGCCCTCTTGCC 60381 28 93.1 32 .........A..........-........ TCACCGACATCGAAGAGACAGCAGAGTCGCTG 60321 29 96.6 32 ............T................ CCGCAACGGGAGCCCAAGGCCGAGGAGATCCA 60260 29 100.0 32 ............................. CGCCGTCGTTGTACTGCACAGGGTTGGCCGCG 60199 29 86.2 0 ......................CAC.T.. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 24 29 97.6 38 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TTCGACGTCGCCGCGCAGGACGAGGAGGACGCCGGCCCCCGTACCCGCCGCGCTCTGCGGGACCGCATCAACGAAACGTCCCTGCTGGAACGCTGTGTCGACGACATCAAGCACCTGTTGCTTGCAGGAACCAGCTCAGCCGACCCCGGCAGCGACCAGGACGTGGTCCGACTTCAGAGCGACGGTGGCCGCGAAGTCCCCGCAGGCTATAACCATGACAACACCAGCGACTACGAACAGGTGAACTGGTGACCGTCATTGTCCTCACCAACTGCCCGGCAGGACTTCGTGGCTTCCTCACACGCTGGCTGCTGGAAATCTCCGCAGGCGTGTTCGTGGGCAACCCTTCCGCCCGGATCCGTGACGCACTCTGGCACGAAGTCCAGCAGTACGCCGACCAAGGACGCGCCCTGCTAACCCACACCACCAACAATGAACAAGGCTTCACCTTTCGCACCCACGACCACGCATGGCACCCCATCGACCACGAAGGCGTCACC # Right flank : ATCGGCGTGGGGTGCCGGGTCAGCGCTCGGGCTTGGCGGGGCGCTGCATCAGCGCGGCCGCGGCCTCGTTGAGGGTGACTTTCGCGTGCAGCAGGTCGGAGATCACTTGCGTGATCGGCATCTCGATGTCGTGTACCTGGGCCAGGGCGAGGATCGCCTGTGCGGATTTGACGCCCTCGGCGGTCTGACGGGTGAGGGCCGTCGCCTCCGCGACGCTCAGGCCCCGGCCGAGATGGGTGCCGAAGGTGCGATTGCGGGAGAGCGGAGATGAGCAGGTGGCCACCAGATCGCCCAGGCCGGACAAGCCGGCGAGGGTAGCCGGGTGGGCGCCCATGACGACCCCCAGCCTGGTGGTCTCGGCCAGCCCGCGAGTGATGAGCAGGGCCGTGGCGTTGTCGCCCAGGCCCATGCCCGCGGCGATGCCGACCGCGAGGGCGATGACGTTTTTCACCGCGCCGCCCAGCTCGCAGCCGGTCACGTCGGTGCTGGTGTAGGGGCGG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.57, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [8-8] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 71203-74654 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMIZ01000014.1 Streptomyces sp. Root264 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 71203 29 100.0 32 ............................. TGATGCCGGATCGCATCCGCTTTCGTGTCGTA 71264 29 100.0 32 ............................. TCACCGTGCACGGCGAAAACGCGGCCGGAAAA 71325 29 100.0 32 ............................. GCCCCGCGCCCGGAGCTCACCGGCATCGCCAA 71386 29 100.0 32 ............................. TCCGTGGAGGCAGCACCCATGGCAGCACCCAA 71447 29 100.0 32 ............................. TTCAACTGCCGCAGCAAGATGTTCGACACCGG 71508 29 100.0 32 ............................. GGCGGCAAACCCACGGCACGCGGCGCACACCG 71569 29 100.0 32 ............................. ATGGGCATGGAGGCGCTGGGGCTCAAGAACGA 71630 29 100.0 32 ............................. GGCCACCGGGTCGGCGCCGGCACCCGCGAGCG 71691 29 100.0 32 ............................. TCGCCCCGCATCAGGTCGGACTGAACCTTGAT 71752 29 100.0 32 ............................. GAGCCGCCGACGACCCAGAACAGATTCCAGCT 71813 29 100.0 32 ............................. CGCCCATTGTCGGCCCGTCGGAATTCCCTCCG 71874 29 100.0 32 ............................. CCGGCCATCGCCAACGGCGGCGCGGCGGTTTT 71935 29 100.0 32 ............................. GGTCGCCGTGGTCATCCAGTGCTCCATTCGGT 71996 29 100.0 32 ............................. GGCTCGGCTCCCCCGGTCTTCCCTCCGCCAGC 72057 29 100.0 32 ............................. CCTGCCGTGCTGCATCCGCGACCGTCCCGTTC 72118 29 100.0 32 ............................. GCCGCCACCCCCGGACCCTGGGGCCAGTACGA 72179 29 100.0 33 ............................. AGAACCGTCTTCTCCAGCCCCGGAACAGGCAGG 72241 29 100.0 32 ............................. GACTTCATGACCAGCCCGGAGCAGTCGTAGGC 72302 29 100.0 32 ............................. TGCTGTACCAGCCGGGCCGGGTCTTCCACATC 72363 29 100.0 32 ............................. ATGGGCTCGATGATGCCGAGCGCGCCGGGCCC 72424 29 100.0 32 ............................. TTTACCGCTTTCTAGTCCCAATCCAAAGGGAG 72485 29 100.0 32 ............................. CCCGTGTTCTGGACGAACAAGAAGTACAAGAA 72546 29 100.0 32 ............................. GTGGCCGATATCGAGATTAACGAAGAGATAAA 72607 29 100.0 32 ............................. GGCAGGCGCTCCCTTGCGCTGCCAGATCGGGC 72668 29 100.0 32 ............................. ACCGGGTTGAGCTTCTTCAGCGTGGCCATGCT 72729 29 100.0 32 ............................. GACGCGCCGTTCGGCCCGGTGGTGGCGATCTC 72790 29 100.0 32 ............................. AACATTGCCGTCAGCACGCAGTGGCAGGACTG 72851 29 100.0 32 ............................. AGGGGGCACCGCATGGCCAACCACAGAACCGC 72912 29 100.0 32 ............................. GACGGGCCGGTCACGCTCGGCGGCAAGGACCT 72973 29 100.0 32 ............................. AGACTGACCAGCGCCGGGACGAGGGTGGCCGC 73034 29 100.0 32 ............................. GGTTCGCTCACGTCGGACGACGTCCGCGACCT 73095 29 100.0 32 ............................. GCGCTGTGGCACCACGCCGCCCCCTCCTCGTA 73156 28 96.6 32 .....-....................... CCACGGCGACCGCGACCTCTTCCGCTCCCGTC 73216 29 100.0 33 ............................. GTCGTCCTGCGCAACGTGACGATCCGGAAGATG 73278 29 100.0 32 ............................. TGATGTCGTTCGACCGGGCCTGCTGCAGCATG 73339 29 100.0 38 ............................. GGGCCCGGGCCCGGGTCCTTGGACACCAGGGAGATTCC 73406 29 100.0 32 ............................. CCCGGACATGGTCTCGGCCGCTGCCGGGTTCT 73467 29 96.6 32 ............C................ GCGCTTGCGATCGATGAGCACCAGGCGGTGGT 73528 29 96.6 32 ............C................ GGCTGCAGGTTCGCGACGAAAGAACGGATCGG 73589 29 96.6 32 ............C................ GGTGGCGGACCCGGTAACGCGTCTGCCACTCT 73650 29 96.6 32 ............C................ TGTCCGAGCTGGTCCGTGAGGGGGTCGTAGAG 73711 29 96.6 29 ............C................ GCCCCGGCCATCGGCTCGGGGCGGCGGGG 73769 29 93.1 32 .G..........C................ CGGTTCGGCGGCGACCTCATGGAGGTCAACGT 73830 29 96.6 32 ............C................ TACTGCTGGGCCTTGCACGACAAGACGGGCGG 73891 29 96.6 32 ............C................ GCGGGCATCAAGGCGTCCATGGCCGGTACCGC 73952 29 96.6 32 ............C................ GGCGACTTCGGCGACCCGAACGCCGAGGTCAA 74013 28 96.6 31 ............-................ CCGCCCCCTGGCCATCCCGACCGCACTCGAG 74072 29 72.4 14 ............C.....CC.CC.ACG.. GTGGCCCTCATGGC ACAA [74088] Deletion [74115] 74119 29 96.6 32 ............C................ GCCGCCGTCACCGGCTGGCATGTGCAGTCCGA 74180 29 89.7 33 ............A.....A........T. GTCTACCCTGGGCCTGCCGATCCGCTCGCCCAG 74242 29 86.2 32 ......T..C..C..........A..... GGTCCGGTGGGCGGGCCGGCCTTCTTGTGCCA 74303 29 86.2 87 ...........GG.........G.....A CAGCTCAAGCTGCCCCGAGCGCAGGGAAGTTGGCCGCTCCCGCGGGGGTGGTCCCCCGGACGTCACCATGGTTTCGACCGTCCTGGC T [74318] 74420 28 89.7 57 ............CT...........-... CTCGAAGTCGACGCGCTCGGCCTCCTCGCTCAACTGCTCCCGCACCCGCACCCGCAC 74505 28 79.3 32 .C..-A......C....AC.......... CCGTACCGCGTCCAGCCGTCGGACGTGTCCCT 74565 29 96.6 32 ............C................ GCCATCATCGATGCGGCTGGCCTCTGCGTCGT 74626 29 93.1 0 ...T........C................ | ========== ====== ====== ====== ============================= ======================================================================================= ================== 56 29 97.3 33 CTGCTCCCCGCATCCGCGGGGATGGTCCC # Left flank : CGCCTTACCGATGTCATGTCCACCCGCAAGCCACACGACGAGCCTGCGCCCATCCACCTCGCCACCAGGCAGGACCTCGGCAATCAACTGCCGCATCCCGAAAGGCAGCCACTCATCCCACAGAAGGCCAGCGACGGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAACCATCCATCAGCATCACGATCATGCTTCGCCCACACCGACCGCGCCGCAGCCCCCAGCCGCGCCAGCAGACCATCACGGCAGTCTCCCCCGCTCGTCATACAGACTGCCTACACGCAAACCGGCCTCCAGCAGGCCAAATCGAAGAAAGAAACTCGATCTCTAACCGATCTAGGCCATCCAGCCACCCTTGAGCACACTTGCGTCGTATGGTGACCCGCTTAAACGCCACCACCAAGACAACCAAGAGAGCGAAATGTGCAACTTGCCGGAATTAGCGAAAGTGTGGGAAAACCTCCACCACAAGCTATAGACGCGCAGGTCAGGCAGT # Right flank : CCTCACGTTGTAGAGCCGAGACAGGTGGTCCGGCTGCTCCCCGCAGGGGGACTGAGGACCAGGACGGGGCCGGCCAGAGGGGTGCACCGTGCCACAGGGGCGGGGTGTGCAGCACACGTTGCTGCACACCCCGTGCTGCACGGTGCAGCGGGTTGGGCTTCGCGGGCGCTGTGGCCGACGAAGCGGTGCCCGGTTCAGCGGTCGCCGGCGACGCCAAGGGCAGCCAGGACCCCGGCACCGGTCAGGATGGCGGTCGGCGGCTGCGTGAGGCGCGGGACGCGGTAGACGGCGTAGGCGAGCGCGCCGAGGAGCAGCAGGCAGCAAGGCGCTGCGTGCCTGGCGTGCTGGTGGAGAAGGTGAAGCGGCCCCTCCCCTGCAGTTGCACGACACTGCGGGCGGATACCGGGGCGGGCGACGTCGGTATGCCCCGGACGTCACCATGGTCTCTACCGTCCTGGCCTGCTCCCCGCACCCGCGAGAATGGTCCCAGCGTGGTGGTG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCATCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-48] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 75113-75751 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMIZ01000014.1 Streptomyces sp. Root264 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75113 29 93.1 32 ..................A.A........ AGCGTGGTGGTGAGTAGGCTGTAGAAGACGAC 75174 29 100.0 32 ............................. AGCTCCCACGGCGTGCGGCCGTCGGCCACCTT 75235 29 96.6 32 ........................A.... GGCAGGTAGTTCAGGCCGTTCCCGAATCCGCC 75296 29 93.1 32 ...T....................A.... GCCCGGCCGCCGGATGCACACCCCAGGGGTTC 75357 29 82.8 32 .C.....T.....T......C....C... GGGTGCGCCAAGTGGTCTTGCGTAGCGCGCTT 75418 29 100.0 32 ............................. GCCCTGGCGAAGATCCTGTCAGATCCGGAGAA 75479 29 100.0 32 ............................. GGCACGCCGCTCGTGACGTCCAGGCCGTACAT 75540 29 100.0 32 ............................. GGGCACCGTCCTCACCGTCCCCGGCCTCCTCA 75601 29 100.0 32 ............................. AGGGCGTCGCCGCCCATCTCGACGCGGTACGC 75662 29 100.0 32 ............................. GCGCTCACGGAACTCGTGCGGGCGCATGTCGG 75723 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCCTCTGCGTCGTCTGTTCCCCGCACCCGCGGGGATGGTCCCCTCACGTTGTAGAGCCGAGACAGGTGGTCCGGCTGCTCCCCGCAGGGGGACTGAGGACCAGGACGGGGCCGGCCAGAGGGGTGCACCGTGCCACAGGGGCGGGGTGTGCAGCACACGTTGCTGCACACCCCGTGCTGCACGGTGCAGCGGGTTGGGCTTCGCGGGCGCTGTGGCCGACGAAGCGGTGCCCGGTTCAGCGGTCGCCGGCGACGCCAAGGGCAGCCAGGACCCCGGCACCGGTCAGGATGGCGGTCGGCGGCTGCGTGAGGCGCGGGACGCGGTAGACGGCGTAGGCGAGCGCGCCGAGGAGCAGCAGGCAGCAAGGCGCTGCGTGCCTGGCGTGCTGGTGGAGAAGGTGAAGCGGCCCCTCCCCTGCAGTTGCACGACACTGCGGGCGGATACCGGGGCGGGCGACGTCGGTATGCCCCGGACGTCACCATGGTCTCTACCGTCCTGGC # Right flank : CCTGCGACCCGGCCACCCGCGCGAAGTGGGTGACTNCCTGCGACCCGGCCACCCGCGCGAAGTGGGTGACTNNNNNNNNNNNNNNNNNNNNTGAGGTCAGCCGACGCATCGCGTGGAAGTCGACCTGTTTCCCACACCCGCGGGAATGGTCCCTTGCGCGGGAGCGGCGGGCGCGACCGGCTGCTGCTCCCCGCACCCACGTGGACGGTCCCTCCGTCAGGCCACAGCCCGACTCCTCGCGATTCTGCTCCCCGCACCGCGGGGATGGTCCCGGGCAGAGGCCAGAGTCCGATGGGCAGAGACGCTGCTCCCCGCACCCGCGGGGATGGTCCCGCGGTCATCACTACGGCACCGCCGGGGAACCCTGCTCCCGCACCCGCGGGGATGCTCCCCTGGCCGTAGTCGGCGAACGTCCGTTCCAGGCGGCTGCTTCCCGCACCCGCGGAGAGGGTCCCGGGCCAGGGGGTACCGTGCGAGAACGGCGTCTGCTCCCAGCACCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 75875-76473 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMIZ01000014.1 Streptomyces sp. Root264 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================== ================== 75875 29 86.2 30 ...T.T...A..........A........ TTGCGCGGGAGCGGCGGGCGCGACCGGCTG 75934 29 89.7 32 ...............A..T...C...... TCCGTCAGGCCACAGCCCGACTCCTCGCGATT 75995 28 96.6 32 ..............-.............. GGGCAGAGGCCAGAGTCCGATGGGCAGAGACG 76055 29 100.0 31 ............................. GCGGTCATCACTACGGCACCGCCGGGGAACC 76115 28 93.1 34 .....-..................C.... CTGGCCGTAGTCGGCGAACGTCCGTTCCAGGCGG 76177 29 89.7 30 .....T.............A..G...... GGGCCAGGGGGTACCGTGCGAGAACGGCGT 76236 29 89.7 32 ........A........A......A.... TCCGCCGGCACCCGGTTCAGGACCTCGATATT 76297 29 96.6 32 .....A....................... GCGATGCTCATGGCGCCGTTGTCCAGGGCGCG 76358 29 89.7 59 ....................C..A.C... ACCCCCCTGGGTGCGCGAGCACACCGTGCTCTTCGGATCTCCTGGTTCATGAGGGCAGC 76446 28 89.7 0 .....-.......T..........A.... | ========== ====== ====== ====== ============================= =========================================================== ================== 10 29 92.1 35 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGCATGGCCCCGGGTGCGCCAAGTGGTCTTGCGTAGCGCGCTTCTGCTCCCCGCACCCGCGGGGATGGTCCCGCCCTGGCGAAGATCCTGTCAGATCCGGAGAACTGCTCCCCGCACCCGCGGGGATGGTCCCGGCACGCCGCTCGTGACGTCCAGGCCGTACATCTGCTCCCCGCACCCGCGGGGATGGTCCCGGGCACCGTCCTCACCGTCCCCGGCCTCCTCACTGCTCCCCGCACCCGCGGGGATGGTCCCAGGGCGTCGCCGCCCATCTCGACGCGGTACGCCTGCTCCCCGCACCCGCGGGGATGGTCCCGCGCTCACGGAACTCGTGCGGGCGCATGTCGGCTGCTCCCCGCACCCGCGGGGATGGTCCCCTGCGACCCGGCCACCCGCGCGAAGTGGGTGACTNCCTGCGACCCGGCCACCCGCGCGAAGTGGGTGACTNNNNNNNNNNNNNNNNNNNNTGAGGTCAGCCGACGCATCGCGTGGAAGTCGAC # Right flank : CTTCGCTGAGATCTCGGGAGCGGTCGGCTCTCGCGGCCCGCCTTTCCGGTGACTGGTCCGGGCACTCTCTGCGTTGGGGGTTCGCTGTCGCCGCCCGGGCACGACTCGCTGGAGATCGCCCGCGCGGGCGCGGCGGTTGGCATGGTGGCGGCGCTCAGCGTCCTCTTCGCAGTCGCTGGTCGGGCACCCGTTCTGGTCGGCTGGGCAGGGTCGGTTGGGGCTTCTTGGGTGGTCGGCGGGTGGCGGGTGGGGTGGCGGTGAGGATGTAGGTGACGCGGTCTGCGAAGCGTGGTCCGGGCACGGGGATCTCCACACCGGGATGGCGGGCGTAGCCGCGGGTGACGGCGTTGGCGACGTAGGTGGTGATGACGTCGGCGCGGCGGGAGGGGCGGTGCGGGTCCGGTGTGTGGAGGGTGCTGAGTATGCGTAGGACGGTGGGGACGGAGGCGTCGAAGTGGCAGTCGTCGTAGGGCGGGTGGGGCCCGACGACGGGGATGGTG # Questionable array : NO Score: 3.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:-0.13, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //