Array 1 162789-160824 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJF01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162788 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162727 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162666 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162605 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162544 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162483 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162422 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162360 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162299 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162238 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162177 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162116 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162055 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161994 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161933 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161872 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161811 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161750 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161689 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161628 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161567 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161505 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161402 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161341 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161280 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161219 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161158 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161097 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161036 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160975 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160914 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160853 29 96.6 0 A............................ | A [160826] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180230-178920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJF01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180229 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180168 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180107 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180046 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179985 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179924 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179863 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179802 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179741 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179680 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179619 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179558 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179497 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179435 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179374 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179313 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179252 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179191 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179130 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179069 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179008 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178947 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //