Array 1 223974-224368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTT01000013.1 Salmonella enterica subsp. salamae serovar 42:f,g,t:-- strain RKS2993 SSLM_0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 223974 29 100.0 32 ............................. ATCAACGGTGCCTTCTTCAGCATTGAAATCAG 224035 29 100.0 32 ............................. GGCAATTCTCGACGGGCGGAAAACGCAGACGC 224096 29 100.0 32 ............................. CGCGCCAGTCATGGCTGACGTCAGCATTACCC 224157 29 100.0 32 ............................. GGGTTATTGAGGTTTCCACGCGGAAAGTGAAC 224218 29 100.0 32 ............................. GCGCGAATGCCCAAAAAGCGGCGCGCCAAAAT 224279 29 100.0 32 ............................. TTAGAGCGTGATGCTCGCGGTGGTACTCGTTA 224340 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTTAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAGATCTTACTCCCTCTTGATGTGATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GGGATGGGCTGTAACACAAAGCAATATTAAGAAGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCTGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAAATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCACTCGAATCGAACCTTAGTCGAAGCTTCTCACCCTTCCCTGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACTCTTCGGGTCGTTGCCTGCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 160484-157647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTT01000045.1 Salmonella enterica subsp. salamae serovar 42:f,g,t:-- strain RKS2993 SSLM_0045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 160483 29 100.0 32 ............................. CCACTATTATTCATATTGTGAGTCACCTTACT 160422 29 100.0 32 ............................. ATGTATTCACTCTGTTTACCAGTACCCTGTAT 160361 29 100.0 32 ............................. TCAATGGACATCGCAAAATGGGTTTGCTCCAC 160300 29 100.0 32 ............................. GTGGTACCGAAATGATTTATCCAACCAGTACC 160239 29 100.0 32 ............................. CTGGCGTGGGATGGTTTTATTAACTGTGCCTC 160178 29 100.0 32 ............................. TCGTGTACCGCAGGAACTCAGCGATGAAGAGC 160117 29 100.0 32 ............................. GCTTATGGTTGCCGAGCAGGTGAACTATTATA 160056 29 100.0 32 ............................. TTCTCCAAACGTCATCCGACCGTGTGTTCGTA 159995 29 100.0 32 ............................. ATTTTTTCTGCCCTCGACTGACGATTCTGACG 159934 29 100.0 32 ............................. CGGGGTGTGTCATGCCTGAACTGGCCGGATTT 159873 29 100.0 32 ............................. TTTTCATTTCAGATAAGAGCACGCACGCCTCC 159812 29 100.0 32 ............................. CTCAGAACTCCCGTAGAGCAGCAGGGGAATCC 159751 29 100.0 32 ............................. GTATTTAGCGAGGGTTTTTGCACCGCTTGCGA 159690 29 100.0 33 ............................. CGCCGCCACTGCATAACACAAAACCCGTTTCAC 159628 29 100.0 32 ............................. AATGGCTGAAACGGTTGCACTCAGCGAGAAAA 159567 29 100.0 33 ............................. GGAGTTTCACCAGCGACTGGTCAATTGCATCTT 159505 29 100.0 32 ............................. TGTAAAAATGTGGGGGGATAGTGCCTTTTCGA 159444 29 100.0 32 ............................. TTGCTCACTTCCCTGTTTGAGGCGTGGATTTA 159383 29 100.0 32 ............................. CTCCGGCAACAATATTGCCGGTAAACGATTAT 159322 29 100.0 32 ............................. CATACATTGCCGAGTTCGACCGCATGGAGAAC 159261 29 100.0 32 ............................. GGTTGGTAACAGGTTGGGTTGCGTATTAGAAA 159200 29 100.0 32 ............................. AGTTGTTTGTCGCGGGATTCAGCCTGGCTGAA 159139 29 100.0 32 ............................. GCGAGAACGTTGGTAGTGTTAACTATAAAATG 159078 29 100.0 32 ............................. ATTTTGCGTCTTGGCGACAATTTAATGTACGA 159017 29 100.0 32 ............................. GTGATAGCAAGTCCGGATTCCGTGACAATAAT 158956 29 100.0 32 ............................. CAGGTATACAACAATTTGCAGAACTGGATCAG 158895 29 100.0 32 ............................. CGCCGTAAAATCGAACGGGCGACGGTCCTGGA 158834 29 100.0 32 ............................. GTCAGTTCAACAAACACCACGACGCGGGAATT 158773 29 100.0 32 ............................. TCACCGGCGTCGATATGAACCGCAATAACCAT 158712 29 100.0 32 ............................. AACACTACCGCAATCGCTATCGCCGCCAATAT 158651 29 100.0 32 ............................. CTGACAGTTACGATGCTTTCTATCTGCTTCAC 158590 29 100.0 32 ............................. CCTTGCGGCGTTTCTGTAGTTCGCGCAGGGCC 158529 29 100.0 32 ............................. GCTGGTTTTAACCCACTGCTAGTAAAACGATA 158468 29 100.0 32 ............................. CCTATATTCTGGAGTTCGGTGATAAATATATT 158407 29 100.0 32 ............................. TTAGGGAGAGAACTAGGTTACTCACAGACCAG 158346 29 100.0 32 ............................. CCTCCGCATCGAAATTTGCGGAGTGGATATTA 158285 29 100.0 32 ............................. CACTCTCAGATTGGACTCGTCATTGTTGTCAA 158224 29 100.0 32 ............................. GTCATATGCCAGGCCAAGTAGCGCCTCCATCT 158163 29 100.0 32 ............................. CAAGAGAGTTTGTCGGTGATATCTGCGGCTCA 158102 29 100.0 32 ............................. GTGATAGCAAGTCCGGATTCCGTGACAATAAT 158041 29 100.0 32 ............................. CAGGTATACAACAATTTGCAGAACTGGATCAG 157980 29 100.0 32 ............................. CGCCGTAAAATCGAACGGGCGACGGTCCTGGA 157919 29 100.0 32 ............................. CAGTGAAGGCCGGTGGCGAGGAATGGCAGTCA 157858 29 100.0 32 ............................. CCCTTTCTCCATACTTCATCTGAATAGTTAAT 157797 29 100.0 32 ............................. TGGCGCGCCAATCCGCCTTCGGTGCGTATCAC 157736 29 96.6 32 ............T................ AATACGCAAAGCTGATTTTGTCGAACAGTGCG 157675 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACTGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 178726-177781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTT01000045.1 Salmonella enterica subsp. salamae serovar 42:f,g,t:-- strain RKS2993 SSLM_0045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 178725 29 100.0 32 ............................. CTAATGAAATTTGGCTTGATGCCGCAAACAAA 178664 29 100.0 32 ............................. CAATGTTAGTTTCTCAAACTACGAAACGGAAT 178603 29 100.0 32 ............................. CCGACTTTATGATGTGATGGCCCGAACAAAGT 178542 29 100.0 32 ............................. CACTCTCAGATTGGATTCGTCATTGTTGTCAA 178481 29 100.0 32 ............................. TATGCGGCAACGTTGAGTCTGATTTTGTATGT 178420 29 100.0 32 ............................. ATGCCCCTGCATTTAACTACGAGTAAATTTTA 178359 29 100.0 32 ............................. CCGCCTCCCCACAAAACGGACAGGGTAATAAA 178298 29 100.0 33 ............................. ATAACTTCTGTAATAATCAAGAATAACTAAGGC 178236 29 100.0 32 ............................. GTTTCACCCTCTACGCGCTCAGGTGGGACAGT 178175 29 100.0 32 ............................. CAGAGGCACACCGTTATTGACTGCATGGTGAA 178114 29 100.0 32 ............................. CGATCTCCTGACGCTCCGCGACCAGTTCAGGC 178053 29 100.0 32 ............................. GGGATTCTGCTGGATATAGATTCACCTGGCGG 177992 29 96.6 32 ..........................T.. GATGGCGAGTGGCCCATCGATAATGGAGTCAT 177931 29 96.6 32 ...........................T. GAGTCCATAGCCCCGCTAAACAGCATGGAAGA 177870 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 177809 29 72.4 0 ....C.......TC..........GCAGT | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.6 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : ATAAACCGTTATAAAACGGCAATCACTGTAATGAAATAA # Right flank : AGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCTCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //