Array 1 2945006-2944558 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028331.1 Pseudomonas aeruginosa strain PA-VAP-2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2945005 28 100.0 32 ............................ AACCGCAGGTGACGCGGGCGCGGTGCATGCCG 2944945 28 100.0 32 ............................ TACGACGAGTCGACCGGGCGACGTCTGGTCAC 2944885 28 100.0 32 ............................ TCCAGGGGATCGGGCCTGCGTTTGGGAACCCG 2944825 28 100.0 32 ............................ CAGGCGTGCGTAGATCCAGGCGAACTTCGCCC 2944765 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGAGCCATCATTGCC 2944705 28 100.0 32 ............................ ACCATAGGGCCGAATGAAGTTGATGTGCTTGC 2944645 28 100.0 32 ............................ ATACAGGCCGTGACGGCCAACAACCCTACTGG 2944585 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : TTGAGGCCTGACCATGACGACCCCGAACGATTGTTCACTGCCTGACCTGCCCCCAGTTTTAGTACCGCTGCCTAGTTAGTAGGCCCTGGGGTTGATATTAATTTTTCCTGCTTCAGCTGCTGCTGGCGAGTTCGCCAACTTGCAGCAAATTCTGCTGGGGTGAGATTGCCAATCGCGCTGTGCGGTCGGTGTTCGTTGTAATCCCGCCGCCAGGCCGCGATGCGGATTCTCGCTTCGGCCAGCGAACAGAACCAGTGCTCATTGAGGCATTCGTCCCGGAACTTACCGTTGAACGACTCGATGAAGGCATTCTGCGTGGGCTTACCAGGCTGAATCAGCTTCAGCTTGATGTCGCGCTGATAGGCCCATTGATCGAATGCCTTGCCGGTGAACTCGGGCCCCTGGTCGGTGCGGATCGCTTTCGGGTAGCCGCGAAACCGCGCCATCTCGTCCAGCGCCCGTGTGACGCGAAAGCCGCTGATACCGTGCTCCACCAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4277932-4277064 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028331.1 Pseudomonas aeruginosa strain PA-VAP-2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4277931 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 4277871 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 4277811 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 4277751 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 4277691 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 4277631 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 4277571 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 4277511 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 4277451 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 4277391 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 4277331 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 4277271 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 4277211 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 4277151 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 4277091 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GTCCAACCCCGAGGTAACAGAATCGTCCCCCCGCTTCGTCCCGCTGCTACCCACCTCCCAGGCCGACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGNGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGAATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //