Array 1 40483-35594 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKRW010000056.1 [Collinsella] massiliensis isolate MGYG-HGUT-01427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 40482 29 100.0 32 ............................. GGGCAGGGCTTCAGCTCTTCCATTCCTCCACC 40421 29 100.0 32 ............................. GCCCCGAGCACCTCGGCCGCCTCTTCAAGCAC 40360 29 100.0 32 ............................. GACACGTGGTACGAGACCGGTTTCGACCGTCA 40299 29 100.0 32 ............................. TATTCACCGGCGATGACGTTGAACGGCTTATC 40238 29 100.0 32 ............................. GTTGATGCGATCGACCTCGGTGTGCTCGATGG 40177 29 100.0 32 ............................. CTGGGGCTCAATCCACCTAATGGGCGCATATC 40116 29 100.0 32 ............................. GAGGATTCGCGCCACCTGCGCCCATGGGAGTT 40055 29 100.0 32 ............................. TGCGACGGGAGGGCATGTTGACGGCACGCGAG 39994 29 100.0 32 ............................. ACGTTCCTCATCCACTCGGGGCGGCCGAGGCC 39933 29 100.0 32 ............................. CGGCGGTTGCCGGTGGTGTCCGTGAGGAACGC 39872 29 100.0 32 ............................. CTGCCGCCGGGCGTGTCGCCCGAGGACATCGA 39811 29 100.0 32 ............................. GCTCCGGTTCGCCATGTTTTTACCGTCTGAGC 39750 29 100.0 32 ............................. CTGCGCGAGGTCGATGAGGATGCGAAAGCATG 39689 29 100.0 32 ............................. GCCAAGGCCGCGGAGATGCTTGCCTCGACCCG 39628 29 100.0 32 ............................. CCGGAGATGGAGCCGCGCGACCTGCTCGCCAA 39567 29 100.0 32 ............................. GATCGCGGATGGGACGTCGACGCCATGGCGCA 39506 29 96.6 32 ............................T ACCTTGCGACGTTCGCAAGTGGTGCCATAGCC 39445 29 100.0 32 ............................. CGCGTGGGAGTCCCGAACCCTCCAGCTCGAAC 39384 29 100.0 32 ............................. CGGCGGCAGTCTGCCAATCCATCGCACCGCCT 39323 29 100.0 32 ............................. GTAGCCGGCCCGAACGACCACGTCGGCTTCGT 39262 29 100.0 32 ............................. AACTCCTCGAACCCCTGGACGGTCTACCCCAA 39201 29 100.0 32 ............................. AGGAACAGGGCGCCGTGGTCGCGCTCCAGCTT 39140 29 96.6 32 ............................T TCGTCAAGCATGGTCTGTCCTTCCTATCCGTC 39079 29 100.0 32 ............................. CAGCCGGGAACCCCAAACCATCGACCTCGAAC 39018 29 100.0 32 ............................. TCCCTATGGATGTCCTGCAGCCTGTACATGAG 38957 29 100.0 32 ............................. TGCAAGCACAACGGCGTGCGCGTCTACGGCTA 38896 29 100.0 32 ............................. GGCCGTCCGCGCCCGTGGTGTTGAACTCGATG 38835 29 100.0 32 ............................. CACGCGGGCGACGAACGACTCGCCCACGCCGA 38774 29 100.0 32 ............................. TACGAGTATCACGAGGGTGTAGTCGCAAAGTC 38713 29 100.0 32 ............................. TACGAGTATCACGAGGGTGTAGTCGCAAAGTC 38652 29 100.0 32 ............................. ATCCTAGGACTCATCTCCGGTGGTGCCACCCT 38591 29 100.0 32 ............................. AGCCCCGGGCTCGCGCCCATCATCTCCGCCTT 38530 29 100.0 32 ............................. TCACCCACGAGCGCCCCGACAGTTGGGAGCGC 38469 29 96.6 32 ............................G AGGAGGAGTACTACGACAAGAAGGAGGGCGCG 38408 29 100.0 31 ............................. CTTCTTGACGAGCGTGAAAGCCTGGGCAAGA 38348 29 96.6 32 ............................A GCGCATCGCCGAGATCTCGCCGACCTTCGGGA 38287 29 100.0 32 ............................. CTTCTTGACGAGCGTGAAAGCCTGGGCAAGAG 38226 29 100.0 32 ............................. CGATCGCGCGACCTCCTCGTATCTGCTCGCTC 38165 29 100.0 32 ............................. CTAATCCTCGGCGGAAACTGGCCGCTCGGTGA 38104 29 100.0 32 ............................. ACCATCACGCGAAAACTGCGCGAATACCACGC 38043 29 100.0 32 ............................. AGCGCGCCCTCCTCCGGGATGTGCCGGAGCTC 37982 29 96.6 32 ............................T CCCAGACGGGTATGCGCGATATGGGGCGCAAG 37921 29 100.0 32 ............................. TTCACGCCGACCTCGACCTTGCCGTGCCTCCA 37860 29 100.0 32 ............................. ATGAAGGCACGTGTCATCGACGAGCGCGACGC 37799 29 96.6 32 ............................T ACACGACCGCCGCGCGTCGTGATGCGTATATT 37738 29 100.0 32 ............................. AGCGAAATGGAGTTGAAAGATTACTACCGTAA 37677 29 96.6 32 ............................T TAACGCGGGCGATGAAAATGGCCAATAAGGAG 37616 29 100.0 32 ............................. CATAAGCAGTCGGTCGCATGCAGTTCGCAGAC 37555 29 100.0 32 ............................. CATGCCAGGAAGAATTCATGCCCTCCGATATA 37494 29 100.0 32 ............................. GGTCACCGGAATCGAACGCATGGATCCGGAAA 37433 29 100.0 32 ............................. GAGCAATCGCATTTGATTCCAGATAAAGCCGA 37372 29 100.0 32 ............................. TACCAGGCGTTCTCGGCCGAGGCCATCATGGC 37311 29 96.6 32 ...........G................. ACGTAGGGCAACGCGTTAAATCGCTGCTAGAT 37250 29 96.6 32 ...........G................. GCTCCCACGTCTCGCCGCCGTCCTCGCTCACC 37189 29 96.6 32 ...........G................. AGCCCCTGCCGCTCCTCGTTCTCGATGTACTC 37128 29 96.6 32 ...........G................. AGGGGTGCTCCGCGATACGAGTGCTTCGTCGA 37067 29 96.6 32 ...........G................. TACATGCCCGGCTTCTGCGCATGGATGGCCGG 37006 29 96.6 32 ...........G................. ACACCTCTAACGACCGAGACATGCCGAACGAG 36945 29 96.6 32 ...........G................. TCAGCCGCCCTCACGTCGCCGCCGACGGCCTT 36884 29 96.6 32 ...........G................. GGCAGCACGACAGCCTGAAGCGCGCGATCATG 36823 29 96.6 32 ...........G................. GCCGTGGCGGAGACGATGGGATACGGCTCCTC 36762 29 96.6 72 ...........G................. CGGTTCGACGGCGAGCCCGACTGCTTGAGGGGATGATCCCACGGCGGCGGAGATACGCGCGTACGCGGAGAG 36661 29 96.6 32 ...........G................. AGACCCGGGCTCACCCCCATCGTCTCCGCTTT 36600 29 96.6 32 ...........G................. GTGCGGAACCGCGGCGGTCGCATCGTGAACAC 36539 29 93.1 34 ...........G................A CGTCTAGGTCGATGGCGAAGACGCCGCCGGACGG 36476 29 96.6 32 ...........G................. GACGAGGTCGTTTCGCTTCTGCCCCTGCGTCC 36415 29 100.0 32 ............................. GCTTGCGGCGCGGTCGTGACCGGGAAGACCCG 36354 29 93.1 32 ...T.......G................. TACACCGATAACTCAATCAGCGCAGACTACAG 36293 29 100.0 32 ............................. GACGTGCGCACGGCGGCGGTGACGCTCACGCT 36232 29 96.6 32 .........................C... GGTACCGACCCCGTGGGGATACGCCGTCGTGC 36171 29 93.1 32 .....T.....T................. CCGCCGAACCCGAACTACCCGGATGGCGAGCC 36110 29 93.1 32 ...........G..............T.. GGGAAGTCAAGCTGGGTAATCTCCGGGCTGTC 36049 29 96.6 32 ...........G................. ATCCGCATGCCGTACCGCGAGTACGCGGCGGA 35988 29 93.1 32 ...........G....T............ GCCTTGGCCACGCCGGAGTTCTTGGGGTTGGT 35927 29 89.7 32 ...........GT.T.............. GTGTTGATCTCCGTCACCTAGATGTAGGAGTC 35866 29 86.2 32 ...........TT.T.............T GGCGCGGGGACGCGCATGTACCAGAAGATCAT 35805 29 93.1 32 ...........G....T............ ACGTTGCAGAAGACCTTGCGCTTCGTCTCTTG 35744 29 82.8 32 ...T.......GT.T.............G TACGACACCGAGACGGCTGAGGAGGTCGCCGA 35683 29 89.7 32 ...........G..T.....A........ TTCGACTACGACATTCAGAAGGTGCACGATGA 35622 29 82.8 0 ...........G......A.....G.T.G | ========== ====== ====== ====== ============================= ======================================================================== ================== 80 29 97.7 33 GTGCTCCCCGCACACGCGGGGATGATCCC # Left flank : GTTGTGGGACGAGAAGCTCGGCGAGGTTGCGGCGGGCACGCTATATGCAGACGCTGCGGAGGGTGATGCGTGATGGTCGTGATGGTGCTGACTGCCTGTCCGACGGGCGTGCGCGGTGATTTGACTCGATGGTTGCTTGAGATTGCTCCCGGGGTGTTTGTAGGGAGGCTGTCCGCGCGGGTGCGGACGCGGCTTTGGCTCCGTGTGTGCTCCCTCATGAAATCTGGCAGAGCGATCATGGTTTATAGCGCACGTAATGAGCAGCACCTTGAGTTCGAGGTGTTCCAACCCGACTGGAAACCGGTGGATTGCGATGGGGTGAGACTCATCAAACGTCCCGCCGGCACCGATGATGCGACGCTGATGGGGTCTTTGCCATCGGGTTGGAGCAGCGCTTCGAAGTATCGGAGGGCGCGTAAGTATCGCGGTTGACCCAAACTTCGCTCGATATAATGAAGCGGAATACTGAGGCGCCCCGCGATGTTAGCAGGTATCGAAGT # Right flank : TAAAAAAGAAAAAAATGGGATGTAATCTAAAAAGCGCTCGAATCCCATTCCCGTTTCGGATAGGAGTTCGAGCGCTCCTATATTTCAGCACTGCCCACGCGTACGGAGCAACCCCTTATCGCAGCCCCGTCACCCTCAAACCACCACCGCAAACGCAATCGCGAGGTCGGCTTCGTTGCTGATGCTCACTAATATATGGCGCACGCCGGCCTGCTCGCAGATGCGCGCGAGCTCGGGCGTCATCTGCACGTGGGGGCTGCCGTCGTCCGCGGCGAGCGTCTCGACCAGTCTCAAATCGAACGTGCCTGCCTCCGTCAGATGCGCGAGCGCTTTGAACACGGCTTCCTTCGCCGCGAACCTGCCCGCCAGATACGAGGCACGCCCCGCACCCCGCTCCGCGGCCCCGGCCCGCTCGCGCGCCGTGAACGTCCGCGCGGTGAACCCGTCCGCCTCGCGGTCGAGACGCCCGATCTCGCTGATAGTGACCGCGTCGACCCCGA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //