Array 1 16129-17348 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGSOD010000006.1 Streptococcus equi subsp. zooepidemicus strain 20854 contig6, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     16129	    32	 100.0	    33	................................	GTACAAAATAGTGTGTTAATATAGTATCATAGC   	
     16194	    32	 100.0	    33	................................	CAGAGATTGATATCCAAAAAACAAAATCCAATG   	
     16259	    32	 100.0	    35	................................	CTACCAAGATATTTGTAACAATCTTGGAATGGATT 	
     16326	    32	 100.0	    34	................................	CTGAAGCAATAGCTAACAATCCCGCTTTACAATT  	
     16392	    32	 100.0	    33	................................	AAGCTTTTATATGGCTGATAAACTGCTTGGAAA   	
     16457	    32	 100.0	    35	................................	AAGGTATTGAGGAAAAAATTGCCACTGGCAAAAAA 	
     16524	    32	 100.0	    34	................................	ATTGCTAACACTAGTAAAATTACCTCGTAGTGTC  	
     16590	    32	 100.0	    34	................................	ATGGTTAATGTCCAAAAATTAAAAGGTGTGATTG  	
     16656	    32	 100.0	    35	................................	AAATCAAGGGTTGAAAACTTTGTAATTTTTGGCAT 	
     16723	    32	 100.0	    34	................................	CATTGAATCGCCAGCTACTTTTGCAATAGTATCA  	
     16789	    32	 100.0	    35	................................	AGCTTTTAATAAGTTGTCAAGACTAACAGTACCAT 	
     16856	    32	 100.0	    35	................................	ACTAAAATATGCAAAATAATGAATAAAAAGGAGAG 	
     16923	    32	 100.0	    33	................................	AAAGGAAGATGAGTACTTGGCTAGACGACTTAA   	
     16988	    32	 100.0	    33	................................	CTAAAGAGGTGACGGAATGAATAAAAGCGAAAT   	
     17053	    32	 100.0	    34	................................	TCAGAAACAAATAGCTGAACAAATGAAGATTTCC  	
     17119	    32	 100.0	    33	................................	GTGTATCGCAGACATGCATTGCCTTGCGTTTCG   	
     17184	    32	 100.0	    33	................................	TGCGAGATTAACTTACTGCACATGGATTTTATC   	
     17249	    32	  87.5	    36	........C..TGC..................	CTAAAAGACTTTCTGATTTTAACCAACCCTGACAAC	
     17317	    32	  84.4	     0	........CCAT.C..................	|                                   	
==========	======	======	======	================================	====================================	==================
        19	    32	  98.5	    34	GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT	                                    	       

# Left flank :   TAAGGCTATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAATGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCTTACTTCTGTAAAAGGAGCGAGTGCGAGCCTGGATTACTCATAAAATGCTGGGAGGCTCGCGCTAAAATAAGCTAAAAAATGGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTATATCATTTCTCTATAAACTGTGCTATATTGCGCA
# Right flank :  TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATTAAGGTGTTCAAAGCTGTTTTGAAGGGGTGATTGAGATGAGGCATAACTCAAAGAAGAGCTCTGTATTCTTTTCTTGCAAATGAAAAAGAGGCAGCTGATAAAGGTCATAATAGTC

# Questionable array : NO	 Score: 9.19
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,10] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-5.40,-2.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0.37   Confidence: HIGH] 

# Array family : NA
//