Array 1 814-175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQI010000035.1 Nocardia farcinica strain BJ06-0137 NODE_35_length_32258_cov_27.288382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 813 28 100.0 33 ............................ GTACCGCGAAGCCCTGGCCGATTGGGAAGTCCT 752 28 100.0 33 ............................ CAGCGGCACGCCGCGGTGGGGAACCACCGAACA 691 28 100.0 33 ............................ CACCCGCTCCTGCTCCGGTCCGTCCGTGGAGTA 630 28 100.0 33 ............................ CGGCGGCAACGGCGGCAACGGAATCGCCTACAT 569 28 100.0 34 ............................ CCCCGCCAGGTCGTTTTCGTGCCAGCGGGTTTGG 507 28 100.0 33 ............................ GAGCTGGCAGAAGAAGGCTGATCAGGAGGCGCG 446 28 100.0 33 ............................ CCGGATCGCCAAGGGCGTGAAGGTGTGCGACGA 385 28 100.0 33 ............................ CGGCAGGGCGAAGCGGGCGATGCCCGCCGACAG 324 28 100.0 33 ............................ CTACGAGAGCAAGGGGATCGGCCTGGTCCTCAT 263 28 100.0 33 ............................ TCCTGCCACGCAAGCGCGGCGCTACACCGTGCG 202 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 11 28 100.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCGTCGAGTTGCCGTGCCCGCCGGGGTCTGATTCTCACCACAGGCGGTGGGGCCGATGTTGTGGGGTCGGGTAGCTTCTGGATCAGGTTTTCCAGGGCTTCCGCCTGCGTTTCAGGGCTTCTACCTGCGCTTTTAGGGTTGTAGTAAGGTCCCCCAAGGTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTGTTTATTTTTCGTGGGCCTTCTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCATGTCGCTCGCTAAGGTGTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTGGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAAGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGGTACGACGAAGGCCAGCCCGGCGAACGGGCTGGTGCCCCCGCGCATGGGTCAAGCCCCTAGTAGTGGTGTAACTGGTTTTTGATCCTTCGTTGGTGATCAGGCGGGTAGTTGCATCAGTGGATCGGTGGCCACCTCCGTCGTCGAGCTGGTGCCGGTGGTCAGTGTGAGTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50575-48305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQI010000025.1 Nocardia farcinica strain BJ06-0137 NODE_25_length_74503_cov_26.994985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 50574 28 100.0 33 ............................ CAGCTGCTTGATCGCGTTCGCCAGCGAGCCCAT 50513 28 100.0 33 ............................ CGCGAGCATCGTCGACGAGGAGCGGCTACGCGG 50452 28 100.0 33 ............................ CTTCCGGGAAGGGTGCAGCTTCGCCAGGATCCA 50391 28 100.0 33 ............................ CTCCCCTCGATGCGCCGCTTGGCAGACGAGTAC 50330 28 100.0 33 ............................ CGACATCAGCATCGGCATCATGCGGGGCGGCGG 50269 28 100.0 33 ............................ CACCTCGACCAAGCTCGAGGTGCTCAAGCGGCA 50208 28 100.0 33 ............................ CCGGGATTCCAGGACTGGAAGGACGCCGACCTG 50147 28 100.0 33 ............................ CAGAACGCCGCCTGACCGCGAACCCCACTCAAC 50086 28 100.0 34 ............................ CAGGGGCGTCACCACGTACAGGACGGCGCTGAGC 50024 28 100.0 33 ............................ CCGTGGGGCCTCATGCACCTCGACCGGCCGGAA 49963 28 100.0 33 ............................ CTGCACCGCCGAGACGTCGCCGAGCGCAAACAC 49902 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 49841 28 100.0 33 ............................ TGGCTCGCGTCGACGTACGGCCAGGCCACCGCA 49780 28 100.0 33 ............................ CCCGAGACCGCAGGCGCAGGTGGTCGACCGGGA 49719 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 49658 28 100.0 33 ............................ CGTCAAGATCTGGGAATACGCCCGGGTCTTCGT 49597 28 100.0 33 ............................ CGGCCGCACCTTCGACCCCCAGCCGGACGCTTT 49536 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 49475 28 100.0 33 ............................ CCACACCATCAGATCCGCGAGCGCGGTGGCCGT 49414 28 100.0 33 ............................ CCGGGGTGCGGAACTTCATCCGCGACGACCAGG 49353 28 100.0 33 ............................ CGGTCAGGCTCACCGCGCCGACACCGACGGCGA 49292 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 49230 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 49169 28 100.0 33 ............................ CGAGGCCCTCGAGGCAGCCATCAACATGGCGGG 49108 28 100.0 33 ............................ CGGCGTGACCGTCGCCAGCGTCACCGGCGCGTC 49047 28 100.0 33 ............................ CTGGTCGTGAGCGCCTTCTTGATAGCGCTGGGC 48986 28 96.4 33 .................T.......... CCCGTTCCTCACCGACGCAGCGCACGAGGAAAT 48925 28 100.0 32 ............................ CTGGACGGCGGCCGGGTGTCGAGCAGTGCGGG 48865 28 100.0 33 ............................ CGGCGCCACCCCGCCGATGCCATCCCCGACAAA 48804 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 48742 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC A [48721] 48680 27 96.4 33 .................-.......... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 48620 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 48559 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 48333 28 71.4 0 ...G..TG.....CG.TC..A....... | G [48306] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 35 28 99.0 38 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGTTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCCA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60291-59759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQI010000025.1 Nocardia farcinica strain BJ06-0137 NODE_25_length_74503_cov_26.994985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 60290 29 96.6 32 .......T..................... AGGTGTCAACCGGGGCACCACACACCACAAGG 60229 29 100.0 32 ............................. CGGCCCAATCGGGGCACCCAAGCTGATGTACC 60168 29 100.0 32 ............................. GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 60107 29 93.1 32 ............C...............T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 60046 29 96.6 32 ............C................ GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 59985 29 93.1 32 ............CG............... GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 59924 29 93.1 32 ............CC............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 59863 29 89.7 46 ..........T.C............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC T,C [59835,59854] 59786 28 72.4 0 A.......G..AC.T..C..-.C...... | ========== ====== ====== ====== ============================= ============================================== ================== 9 29 92.7 34 GTGCTCCCCGCGGACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : GGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGACAACACGCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 72928-71311 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQI010000025.1 Nocardia farcinica strain BJ06-0137 NODE_25_length_74503_cov_26.994985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72927 29 100.0 32 ............................. CGGTTCCTCGAAGTCGACTACGCGCCCCGGGA 72866 29 100.0 32 ............................. GGGAACGTTCGTCTCGGGTCGTAGCTCCCACT 72805 29 100.0 32 ............................. TCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 72744 29 100.0 32 ............................. ATCTCCGATGACGGCAACCAGCTTGAGGTGGT 72683 29 100.0 32 ............................. CTTGCCCTGATACGTCCGTAACCCCGCGTACG 72622 29 100.0 32 ............................. TTGTTCATCGCAATCACGGGATCGCCAGCCTT 72561 29 100.0 32 ............................. TTGGAGACCGCCATCGAGAACGCTTGCAACGC 72500 29 100.0 32 ............................. TCGGGATCGATGCAGGGATTGGTCACGGTGTG 72439 29 100.0 32 ............................. GTGAGAGAGGCCCTGACCGGGTTGTTCCTGGT 72378 29 100.0 32 ............................. CGACCTGAATCGACAACCCGGCATGATCAAGC 72317 29 100.0 32 ............................. ACCCCGAGGAGCGCTGATGCCCGACATCGCCA 72256 29 100.0 32 ............................. TCCGGACATCACATGCTCCAGTTCTTGTAGGC 72195 29 100.0 32 ............................. TGTGGGATGGAATGGAGTAAGAATCAGATGAA 72134 29 100.0 32 ............................. TCACCGCGGTGAACAGCAAGCTCGCCGCGGTG 72073 29 100.0 32 ............................. ATTTCGCCCCACACGGTGCCCTCACCTCTCAC 72012 29 100.0 33 ............................. TTGACGGGGCAGACCACGCGGGCCACGACCGGG 71950 29 100.0 32 ............................. GGCACCGAGGGCTGGTCCCCGCGCCAGTACAC 71889 29 100.0 32 ............................. CGGCTCACGATCGGCATCGAGGCCGAGAACAA 71828 29 100.0 33 ............................. TCGCCGCGCTCGTCACACCAGCGGCAGCCGTTG 71766 29 100.0 32 ............................. GTCACGTCCCCGGAGAGGCTGAGCGGCAGGAG 71705 29 100.0 32 ............................. GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 71644 29 100.0 32 ............................. TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 71583 29 96.6 32 ................C............ TGATCCGGGCGATCCTCGACGCCCTCACCGGC 71522 29 96.6 32 ................C............ TGAGCCGCGATACCTATCGAGCTACGTAGCCA 71461 29 93.1 32 ................C...A........ GAGAGTTACTGATCGGGATGACTTGAGGGTGG 71400 29 96.6 32 ................C............ CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 71339 29 86.2 0 C...............C...A..T..... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.9 32 GTGCTCCCCGCGCACGTGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : GAGAAGCTGATCGTCGCCGACCTCTTCACGCTGTGCTCCCCGCGCATGCTGCGTCGCGGCCGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 68500-69931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQI010000019.1 Nocardia farcinica strain BJ06-0137 NODE_19_length_120278_cov_27.541660, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 68500 28 100.0 33 ............................ CGGCAAGTGGCGGAGATCACAGGAATCGCCCGG 68561 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGAAGAG 68622 28 100.0 33 ............................ CGCTGTGTGGTCGCAGTCGGCGGTGAGCGGCGG 68683 28 100.0 33 ............................ CAGGTCGGTGTCGAACGCCTGCGTTTGCACACC 68744 28 100.0 33 ............................ CCCGCGCTCGTGCCGGTATCCTGACGCTGTGAG 68805 28 100.0 33 ............................ CCGCTTGGTCAGTTCGTCATCGGCTGCGGACAT 68866 28 100.0 33 ............................ CCCTTGCGCCCGGGCTCGTTCGGTGTTGGTGAG 68927 28 100.0 34 ............................ CTACACCGTGAAGTGCCGCATCACCACCACCCAA 68989 28 100.0 33 ............................ CAGCGCGGCGACGAACCATCCGCGCTCGACGAA 69050 28 100.0 33 ............................ CCGGTGCGCTTGTACGTCTCCTCGTACGGAATG 69111 28 100.0 33 ............................ CTCGAATGCGGTGGCGTCGTCGGCGCCGGCGAT 69172 28 100.0 33 ............................ CCGACCGAACCGGCCGGTCAACTCGACAGAGAA 69233 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 69294 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 69355 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 69416 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 69477 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 69538 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 69599 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 69660 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 69721 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 69782 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 69843 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 69904 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================== ================== 24 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGAACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGGTCCTCGACCCGCGGGTGCGCACACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10149-10785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQI010000018.1 Nocardia farcinica strain BJ06-0137 NODE_18_length_125819_cov_28.190879, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10149 29 100.0 32 ............................. AGGTCGCACACGCTGTTCACGAACACCCTGCG 10210 29 100.0 32 ............................. TCGCCGCCGTCGGGGTCAGGGACCTCGTAGGT 10271 29 100.0 32 ............................. CAGCTCAGAAAGCCGTCGAGCAGCGTGCCGGT 10332 29 100.0 32 ............................. AGTCCTCGAGGCGGCCCGACCACCGTGCCCCG 10393 29 100.0 32 ............................. GGCGTCACGGGGAATGTCCTGGTCAGGTCAGC 10454 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 10515 29 96.6 32 ..............A.............. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 10576 29 100.0 32 ............................. CCTGCGGCTGCGGTCAGGTGCGACCCAGCGTG 10637 29 96.6 32 .................A........... GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 10698 29 96.6 31 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGCA 10758 28 79.3 0 ....CT.......-G.GA........... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCGTGGGTCGTCGACGGACCAGGCACGTGGGGCGTAGTCGGTCTCTCACGCGCCCCTTGGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACTATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTGCAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACGTCGTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGCGCTCTTCGAGGCGGGTCGGCATCAGGTTCATCCTTTTCGCCCGGAAGGAGCCGCCGACTGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAGTTCCTCTGGGGTGACGCCGAGTTCTGTGAGTATCGCGCGCAGTTCTGCGAAGGCTTGGGGGAGGTCGGGTTCTTCGGCGTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17979-18312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQI010000018.1 Nocardia farcinica strain BJ06-0137 NODE_18_length_125819_cov_28.190879, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17979 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 18040 29 100.0 32 ............................. CCGTACCACCACACCGGGACGTCGCCGCGATT 18101 29 100.0 32 ............................. TCGAAGTTGTACTGCAGCACGGTCGCGATACC 18162 29 100.0 32 ............................. TCGCCTCTGGAGCCTGGCACGAAACGCTCGGC 18223 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 18284 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGGCAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCCGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGGCGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : CTGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCCGTCGCGCTGTGCGGGGTCGAGTTCATCAGGCCGAACACCGCGTGGGCTCGTACGCGGGCTTCGCCTTCGGGCAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //