Array 1 644163-642758 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_011835.1 Bifidobacterium animalis subsp. lactis AD011, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	====================================	=======================================	==================
    644162	    36	 100.0	    37	....................................	GACGATATGGCGCTCAGCGTGGCGGAGTGGGAGGCGG  	
    644089	    36	 100.0	    35	....................................	AAGACCGGCACCGAACGCGACTTCACCATGACCTC    	
    644018	    36	 100.0	    39	....................................	GCCCACCACAACGGCAACGGCGGAGGAACACGCGCCGAA	
    643943	    36	 100.0	    34	....................................	AAGCCGAACTCAATCACACGCATCAAAGCGAACA     	
    643873	    36	 100.0	    38	....................................	GTATTCGCCGTTCGAGAGGAATGAGAGGATGCTGTCAG 	
    643799	    36	 100.0	    34	....................................	TCGCCATTGGAGACGCGACGCAGGATACTATCCG     	
    643729	    36	 100.0	    34	....................................	ACGACAAGCCGCCGCCACCGATATTCACCTGCGA     	
    643659	    36	 100.0	    38	....................................	GGCCGCTTCGGTGACGGGCTGGTTTTTCCACCACACGC 	
    643585	    36	 100.0	    34	....................................	AATCCCAGCCGCAAGGTCTGATGCCGCCTGAAAT     	
    643515	    36	 100.0	    35	....................................	AAACAGGTCAATCAGCGGCGCAGGGAGGAGACGAA    	
    643444	    36	 100.0	    36	....................................	GAGTGAACAACTCACTGTGCGAACCATCGAACCGTT   	
    643372	    36	 100.0	    36	....................................	CGGTTGAGCAGCCACGTGGTGATACTGCTCGCGCCA   	
    643300	    36	 100.0	    38	....................................	CTTGCATCCAACGCGCACAGCATTGCATACGGGTATAG 	
    643226	    36	 100.0	    39	....................................	ATCATCCTCACGGAAATAGTGAGCATCCTCGAGAACCTG	
    643151	    36	 100.0	    36	....................................	GGCCGCGATAGTCCACGAGGCGAACGAAGGCGTTGC   	
    643079	    36	 100.0	    36	....................................	GCTCAAGACACTCACCGACCAGCTCAAGAAGACCGA   	
    643007	    36	 100.0	    36	....................................	CGCGATCGTCACCGACTGCACTGTGTTCGCACTGTC   	
    642935	    36	 100.0	    35	....................................	GCGACACCGAACGCCGCCGCCACAGTCGGGATGGC    	
    642864	    36	  97.2	    35	...................................A	AGGGCCAGCAACGTCGTGGAGATCCATCAGGAGGC    	
    642793	    36	  91.7	     0	...........T.T.....................A	|                                      	
==========	======	======	======	====================================	=======================================	==================
        20	    36	  99.4	    36	ATCTCCGAAGTCTCGGCTTCGGAGCTTCATTGAGGG	                                       	       

# Left flank :   ACGCACTTCAACGATGTGCGCCTGAAGAACTTCATCGAGATGCGGCACTGGGACTCACTGCCAATCGAGCGCGCGGAACTGCTCACGCAGATCGTGAGCAACCTGTTCTACGATGTGGAGCGCCGAACCAGCCTCGAATCGTACTTCAGCGGACTGACCGGCGAAGACGTGCACGCCGCAAAGGCCGTGCTGCAGGCGCGCGGGGGAGACGCGAAGCCCTACGACCAGCCGATGGACTACTGGGCCGAGGTGCTGGGTGTGGGCGATGCGCTCGCAGACGTGCCGGGCGACGCGAAGTGGCCGGAGGTGCGGCAGGGGTAGGAGCTATCCCGTGCGAGGGCTGCATCATGCAGCATAAAGCGGGGAATCTCTCGCATCAATACTTTGTAAGGATTTGTTGAGTTTGTGTAGATAAATCAGTCGTTTGTATCACGTCAATTTGTCTACCTCTCGCAAAAGCGCTTATCAGACTATGTGTATCAGTCTGTATTATGGCTACT
# Right flank :  ATGTACTCCGATTTTTATCTAAGCAAAAATGAAGTATGCTGAGAATAACGCAATGAAGCGAGGTGAAGGGTTGGAAGATACATTACCGATTAGTCTCATATGTGACTTTATCTTTTGTCCACGAAGGGCATGGTTAGAAATCCAAGGTGAGAAGATTGAGTCGTTACAGATGGAGCGCGGTTTTCATGACCATCGTGCAGTGGATGACGCCAACGGTGGCCGCGGGGATACTGACTATAGGGCAGTTAATGTGAATCATCAGGGGTGGGGACTGTCGGGGCGATTAGATGCGGTCCGGTTGAATGAAGACAACGGTGTGATTATCCGTGAATATAAAGCTACACCCGTGCGTAGGAGTATGGATGTGACACATGCCATGCGTATACAGCTCGCCTTGCAGGCTGCATGCATGGAGGATATGGGTTATCGAGTAGATGGGACTGAAATATTCTTTACCTCGCACCATCGGATTGTTCCTGTTGAACTAAGAAAATCCGATT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATCTCCGAAGTCTCGGCTTCGGAGCTTCATTGAGGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [10,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.10,-7.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.78   Confidence: MEDIUM] 

# Array family : NA
//