Array 1 209947-209079 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040918.1 Pasteurella multocida strain PM 8-6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 209946 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 209886 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 209826 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 209766 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 209706 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 209646 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 209586 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 209526 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 209466 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 209406 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209346 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209286 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209226 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209166 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 209106 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 767057-765710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040918.1 Pasteurella multocida strain PM 8-6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 767056 28 100.0 32 ............................ TTACCTTCCGTCATTGTTGAGCCTCCGCTAGT 766996 28 100.0 32 ............................ GCTACAAGCAAGCGACGATAGTTTTAATTTTA 766936 28 100.0 32 ............................ AAAGCCTATGAACACACAACCCTTGCACAAGT 766876 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 766816 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 766756 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 766696 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 766636 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 766576 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 766516 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 766456 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 766396 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 766336 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 766276 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 766216 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 766156 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 766096 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 766036 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 765976 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 765916 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 765856 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 765796 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 765736 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //