Array 1 16-1635 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNS01000001.1 Streptococcus mitis strain BCA11 D8854_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16 36 100.0 30 .................................... ATTCTGGGTCAAAGACTGCACCCCCTTGTT 82 36 100.0 30 .................................... TCCCTAGTCCGATAGTCAATCACATCCTTT 148 36 100.0 30 .................................... CGACTAATGGAATGATCCAAATGCAGACTG 214 36 100.0 30 .................................... GCTTCGCATTTAAAAAGGTAACTTCTCCGT 280 36 100.0 30 .................................... TTGATTGAGAGTTTAAAGCATTTCCAGTCT 346 36 100.0 31 .................................... CTTGTTATTGGGGCAACCTTTGAGGGTAAGC 413 36 100.0 30 .................................... CACCATAATTTTTTATGTATTCGTTAGCGC 479 36 100.0 30 .................................... CTTAAACCGCCCCTCTGGACTCTTCCAACA 545 36 100.0 30 .................................... ATGAGAAACACAATGGTTATACATTGTTAA 611 36 100.0 30 .................................... TAGATAAAATAGTGTATAATACATTATAGG 677 36 100.0 30 .................................... TGTAAACCCTCCTCTCAATTGTGTCTTCCG 743 36 100.0 30 .................................... GCTCTGATTGTTGGTGCGATGCCGTCTGTT 809 36 100.0 30 .................................... TTCAATGAAATATCGTGAGGGCTACGAACA 875 36 100.0 30 .................................... AGATGATAAATGTAAACCTTGGAAACCTTA 941 36 100.0 30 .................................... AGAACTTCTTTTAAAGAATACTGACATTAT 1007 36 100.0 29 .................................... TTTTCATATCCAGCCAGAGAAAAAGAGTG 1072 36 100.0 30 .................................... TCCAAACCGATTTCCCTGTTGTAAAAGTGC 1138 36 100.0 30 .................................... TAGAAGGTTTATATGAAGCTCTATAGCCTG 1204 36 100.0 30 .................................... ATGTTTCAAACTAGTTCAGAAAAGTTTTTC 1270 36 100.0 30 .................................... AACTCTTTGCCATGAAATATGAAATCGTCT 1336 36 100.0 30 .................................... AGATAAAATATAACAAAGTGGACATCTCCA 1402 36 100.0 30 .................................... AATCTTCACAGTAGAGTCATACTTGTCTTG 1468 36 100.0 30 .................................... AGCCTCACCTTCATTGTATATTAGACCTTG 1534 36 100.0 30 .................................... CGTTTGCAACATCCAAAATATCTCTAGAAC 1600 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATCTCTCCCTTACTTG # Right flank : CTGCAATTCAATTTATTGATTTACTCTCATTGTGATATATTCATACAAAAACCGCTCTGCTGAGCGGTTTTCGTCTATTCTTACCTTTTGCTACAATACCCACGTACGGATGGCATGGGCGACGCCAGATTCGTCATTTGTTTTAGTGATGTATTTGGCAATTTTTTTGAGTTTTGGATTTCCATTTTCCATAACAACTGGGTTACCAACGACTTCGAGCATGGTGCGGTCATTTTCTTCGTCACCGATCGCCATGGTTTCATCTTTGGTTAATCCGAGTTTTTCAGCTAGGTGAGTGATGGCTGAACCCTTGTCTACATTCTTTTTAAGGAGCTCAAGGTAGAAAGGAGCAGATTTGTTGATGGAGTAGCGTTCGTAAAATTCTGCTGGGATTTTTTCAATCGCAGCATCGAGAATCGCTGGTTCATCGATAAACATACACTTGACGATTTCCTTGCCATCCATTTCTTCAGGAGTGCGGTAAAAGATAGGCATGTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 16-513 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNS01000018.1 Streptococcus mitis strain BCA11 D8854_contig018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 .................................... ATTCTGGGTCAAAGACTGCACCCCCTTGTT 82 36 100.0 30 .................................... TCCCTAGTCCGATAGTCAATCACATCCTTT 148 36 100.0 30 .................................... CGACTAATGGAATGATCCAAATGCAGACTG 214 36 100.0 30 .................................... TATTAAGTAAGTCTAGTATCCACGACAGCG 280 36 100.0 30 .................................... TATGAGAAAACACAACTAAAAGCTTCAACA 346 36 100.0 30 .................................... TTCAGGATCTTCGATGGTAATCAGGTCATG 412 36 100.0 30 .................................... TAATTCCATTTTAATATCTCTCCCTTACTT 478 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATCTCTCCCTTACTTG # Right flank : ATTCTGGGTCAAAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 711-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNS01000003.1 Streptococcus mitis strain BCA11 D8854_contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 710 36 100.0 30 .................................... AAAACTGCGAAAAATCCAAAATCCGATTAT 644 36 100.0 29 .................................... TAAGTCTACAGGTGAGGTAGTTCGTTCTT 579 36 100.0 30 .................................... GATCAATGTCGCCTGCCCAGATAATTTGTT 513 36 100.0 30 .................................... GGTCATTTAGTTTCTTCAGCGCTTCTACTT 447 36 100.0 30 .................................... AAACCAGTAGTGATAAAACCACCATACTCA 381 36 100.0 30 .................................... AGTTAGCGTCACTCAAGAAAGAGCTCAATA 315 36 100.0 30 .................................... CAAGCGACGGTATAATTCATTGTTAGCTGA 249 36 100.0 30 .................................... TATGAGAAAACACAACTAAAAGCTTCAACA 183 36 100.0 30 .................................... TTCAGGATCTTCGATGGTAATCAGGTCATG 117 36 100.0 30 .................................... TAATTCCATTTTAATATCTCTCCCTTACTT 51 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTTTGATTAATCATAGCGATTCATTATATATTGTTTCATTTCCTTCCAATGAAGGTTATCTTCATGTATCGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATAAAAACAAAATTCCGTATTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTCTTGAGGGCACAAAAATCAAAATTGACGAATTTGAG # Right flank : CATTCTGGGTCAAAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //