Array 1 5561-2915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHH010000003.1 Clostridium perfringens strain 1P26 NODE_3_length_311377_cov_104.197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5560 29 100.0 37 ............................. GTTCCAGTAAATAAAGCTTTATTATTTACTATATAAG 5494 29 100.0 36 ............................. CTCTAAAAACTATAAAATCTTCATCATTTACTCTTT 5429 29 100.0 36 ............................. AGAGAAATTAAAAAGGATTAAAGAAATCATAGATGA 5364 29 100.0 37 ............................. CCGTATGGCAGAGAACAAGTTAAATGGATAACTAAAG 5298 29 100.0 36 ............................. ATTACTTGATCCTTTTGTTTATTTTCTAATTCTAGC 5233 29 100.0 37 ............................. TTTATATCTTTAGCAGCACAAGCACTTAGTACAATCA 5167 29 100.0 37 ............................. AATGCTAAAACAAATAAAAAGCAATATGTAAATGACA 5101 29 100.0 36 ............................. TTAATCTTACCTACTGTTAAATTATCTGCATTAAGA 5036 29 100.0 37 ............................. TTATTTGATGATTCAATTCAAATGTGAGAAGATAACG 4970 29 100.0 37 ............................. AATAAAGTCGGCATAATACTTATTATTATAAGAACTT 4904 29 100.0 37 ............................. ACACGCTTAAGAGTAACAGTAAAAGAATCAACAGAAC 4838 29 100.0 36 ............................. TTAATGAAGGGGTTCGGTGGATTACTGACTGGAGCT 4773 29 100.0 37 ............................. GTTGAGAAAGTGCAAGGTGTTAATAGAAAAGTTAAAG 4707 29 100.0 36 ............................. CTATATAAATCTATCATGAGTTAACACCTCCGTTTA 4642 29 100.0 36 ............................. TTTACAAATATAGTTTGAATCATAAGGGCTTTTAAA 4577 29 100.0 35 ............................. ATAGGTGACGCAAGCGAATGTCGGAATGGGTAACA 4513 29 100.0 36 ............................. TATTTGCGGGTCAATTAGTCTATCAAACTGACTTAT 4448 29 100.0 37 ............................. CTCATCCACTTAACCAAATAAGCCAAACCAACCTGAC 4382 29 100.0 36 ............................. AATGAATGGAGAACTGTATAATTCCCTTCCAATTCC 4317 29 100.0 36 ............................. TTTTATTTGAGTTATTAATGTTTGATGAAGATATTT 4252 29 100.0 36 ............................. ACATTTGAAGAATTAGAAAATGATTTAGATGCAGCT 4187 29 100.0 36 ............................. AGCTCTGTACATACGAGAATTATAATAGCCTGTGTT 4122 29 100.0 36 ............................. AAAGAAAAAGTAGTTTTAGAAATGCTTAGAAGGTTC 4057 29 100.0 36 ............................. GAAGAAGTAGTTAATATAGCAGGTAAGTTATGCTAC 3992 29 100.0 37 ............................. TTTTGTATTCGGCAATAACCTTCTACAGGACAATACA 3926 29 100.0 36 ............................. CTGTGTGGAGCACCACTAGGATAATGTCCAAAGAGT 3861 29 100.0 37 ............................. TTATATTATCAGTTATCTCTTGTATTTCATTCTCATC 3795 29 100.0 37 ............................. CGCAAAAAATATTCTTTCATACAGACAGATGATATAA 3729 29 100.0 36 ............................. ACTACAATAGTTTATCAACTCGCAGAACCAACTGTA 3664 29 100.0 36 ............................. TAAAAGTATCTTTGATAAATTGGTATAAAGTTTCTG 3599 29 100.0 37 ............................. TAAATTCTTCTAAAGCAACTGTAAGGATCTCTTGCAT 3533 29 100.0 37 ............................. TGGAGGTGGATTAGTCACTATTTACGCTCACAATTCA 3467 29 100.0 37 ............................. ATCATATAAAATCCCATGCTTCTCATAATATCGTTTA 3401 29 100.0 36 ............................. TTCTTAATTAGTCTTATTATTTCTTCAACATCAGCG 3336 29 100.0 36 ............................. CATGAACACTATCAAAGCTAGTTGTAACATTAGAAT 3271 29 100.0 38 ............................. ATATTAACCATGTGAAAAACTTTTTCATCAACTTCTCG 3204 29 100.0 36 ............................. TGAATCTATTTAGAGAATCAGTTAATGAATTTAAAA 3139 29 100.0 36 ............................. AAAGTTAAGGGTAACGATCATGGCATATGGAGAAGA 3074 29 96.6 36 ................A............ ATTTTTTGCTCTTACCCTTGCCTTCCCATTTGAGCG 3009 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 2943 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ====================================== ================== 41 29 99.2 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGCTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATATTTATTAAATTTAGAACTTTAAATCTAATAATCTATGTATTTAGCAGTTTACAGCTAATAGCTCCCTTGAAATTTCCTCAAACCTTTCATTAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTAGGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //