Array 1 199180-198613 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLL01000011.1 Pseudomonas sp. Leaf58 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 199179 28 96.4 32 ...........................G TGGCACACGCTTTCGCTCTACCCCGAGACCAT 199119 28 100.0 32 ............................ TACCAGACGATCAGAAGAGGGGCATTGAAGGT 199059 28 100.0 32 ............................ AGGTCGTTCTCTACTTGCGCCTTCGCAGCTGC 198999 28 100.0 32 ............................ GCCGACGAGGCCCAGCTGTACCACCCAGGTGA 198939 28 100.0 32 ............................ GGTCAGTCACCCCGCAGTTGCAGGATTACTGT 198879 28 100.0 32 ............................ CAGCGCGCCCCGGCTGCCTTCAAGGCATTGGG 198819 28 96.4 32 .........T.................. TTAACGTGGTGCTCACCCTTTGTTCGGGCTAA 198759 28 89.3 32 .C.......T..A............... AAGGCACTGACACGCGAAACCAAATCGCAGCT 198699 28 85.7 32 A.......T.AT................ CGCACACCGGCTTAATCATTGAGACCAAAGCC 198639 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.4 32 CTTCACCGCCGCGCAGGCGGCTTAGAAA # Left flank : CCGTTGCCAGCGATGTTGAGGGTCTTCACGCCCAGCTCATTACAGCGGCGCCACAGCTGCCTGGCCGCCTGAATTGGTGCCATCGAGAGCGGTAAGGCAATGTAACGCTCTTTCCCACGGGCCTCGGCGAGCTTACGCGTCAGTCGCTCGCCACCAGACTCGTAGTCCTCAGCAAAGGCCACCGTCAGATCAGCCGAATTGGCGTTGAGTTCGGTGCGCGGCGGGTATTTGTCGGATTTGTGTTCGCGGACTTGCATAGCAGACTCCTGTTTTAATCAATATAGCAATAAAGAATCCGCGTTTTCCAGCTTAGGGTTGTGTTATCATCCCTAGTGCGAACCTTCGACATGGTTGTTCAGCGAAGAAAACCTTGGTAATGAGGTCGTCTCATTTTTTCCTTAAAAATCAGAACGTTACGAATTTGCATTTTGGAAGAGGTCTTGCAAGGGTAATTTCTAGTTAGTCATTGATTTTAAAGGTTTTTTGCCATAAAAACTCTA # Right flank : TTCCAGCAAGGCTTGCTACCAGGGGTTTCCGCTTTACCATCAATAGTCTTGATATCTGAGGCCCTGCCCAGCCTATAATGGGTAGGTTCAATAATACGCATTTCTCATGAACATCGAAGACGACATTGCCCGCCTGCGCGCCTCAGGCATCTCCCGCACGAAAGCTGCACAAGCCCTCGGCCTGCCAAAGTGGAAACTCGATACGATGTTGGAGCTCCTCGAAATCGAGTGGAAGCCCCGCATTCGGGGTGGCACCTATGTAATCGACGGGGTTACCGACACCCTGGAAGGTCATGCTCAGGCCTTGGGTGTCGCGCCCACCACGCTGCGCCAGCGCCTTCAGGCTGGCAATGACCTCACAGCCCCGCCTGCAAACACACCTATAAGCTCGGAAGAGGCCCATGCCTTCGCTGAATTGCGTAGGGCAGGTGTAGCCGCCTGGGATGCTGCGAAGCAAATTGGGCGGCCCTACAACACACTGAAAAATGCCGCGAAGAAGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGCGCAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.40,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 685602-683472 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLL01000011.1 Pseudomonas sp. Leaf58 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 685601 28 100.0 32 ............................ CTACCGCCGTCATTTTTGACAGCAAATCGATG 685541 28 100.0 32 ............................ GCGAAAAAGCGGCGCTGGAGCAAGCTGCCCAG 685481 28 100.0 32 ............................ AGGGGGGAGCTCGATGCGAGCAATGCGGACGC 685421 28 100.0 32 ............................ AAGGATTCGTAGACGCCCCGTCGCTTCGAAAA 685361 28 100.0 32 ............................ TCGCTGGAAACAGCTCGTAAAGGGCGCCAAGA 685301 28 100.0 32 ............................ CCAGAGCTCAACCTGGAGGCCTGGCGCAAGCT 685241 28 100.0 32 ............................ ATCGCACCGCTGATGGCGCGGGCTTTGAGGTC 685181 28 100.0 32 ............................ CTGGCGGGAGCGCTTTGGCCAAGCCTCGACAG 685121 28 100.0 32 ............................ TCATGGAAATCATCGTTGCCAATGATGGTGTC 685061 28 100.0 32 ............................ CGGCCCCCGCCTCAGCGGGCTCTGGCTGAGCG 685001 28 100.0 32 ............................ ATATCAGCGAAAGCTTCCTGGGCGTTTTTTGA 684941 28 100.0 32 ............................ CATTTGACCGACCGACCTGCTTTGCCGGTCTT 684881 28 100.0 32 ............................ TCATCCACGACCCACTTCACTGATCGCCCCTC 684821 28 100.0 33 ............................ CCGCGAGGAATGGCGGCAGGAGCAAGCGCAGGC 684760 28 100.0 32 ............................ ATGCAGGCTCGATACCTTGAATGTGCTTTTGC 684700 28 100.0 32 ............................ GCGTAGATCATCTTGATCGCATTGCTCAGGCC 684640 28 100.0 32 ............................ ATGAAAGACCCTAACGACCACGCGACCGTCGA 684580 28 100.0 32 ............................ AGTTGGACAGGCAAAATCCCGCCGTAGATAGC 684520 28 100.0 33 ............................ TTTCAGCTCCGCAGCCGTGGTGCGGTTGCCATC 684459 28 100.0 32 ............................ CCTCCGGCAACAAGAGATGGGAGTTGAGGTAC 684399 28 100.0 32 ............................ AGGGTCTCCAGGGGCTCGCCAAACACATAGGT 684339 28 100.0 32 ............................ TCGACCCAGCCCCTTCACTGATTACTCGCTAT 684279 28 100.0 32 ............................ TCTGGCGGGCCTCGTCGTATCTGCCTACCAGT 684219 28 100.0 32 ............................ ATTGCTTCACCAAAGGTTACGAGGCTGCCACA 684159 28 100.0 32 ............................ TCAACAGGCTTGAGGTCGATCAACGGTTCACG 684099 28 100.0 32 ............................ AGAACTGCTCCAGAGCCTGCTGCCTCGCCAAG 684039 28 100.0 32 ............................ TATATCAGGCCATAATCGATAGATCTGAACTG 683979 28 100.0 32 ............................ ATTGCCGAGACCCGCGAAAGCTCGGCTGTAGA 683919 28 100.0 32 ............................ GCACTGGCGGTCACGCTACGCAGCCTGGCAGA 683859 28 100.0 32 ............................ AGGGCGATGTGAATTCTCAAGTCCCTGGAACT 683799 28 100.0 32 ............................ AATCGCTGGATAAAGCGCCGACGTGATGACGA 683739 28 100.0 32 ............................ CATCGCACATTTAACCCCAAAGAAACCATATT 683679 28 100.0 32 ............................ TTGGTGGCCTTGACGGTCAATGGGACGCGGGT 683619 28 100.0 32 ............................ TCAAGCGGCGGTATCGCAAGAAAGGCGCCCCA 683559 28 96.4 32 ...........T................ ATAAATGGCCCATTGATTTATCAAGCCTACGC 683499 28 85.7 0 ...T........CCA............. | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 CTTCACTGCCGCATGGGCAGCTTAGAAA # Left flank : ACATGGGCATCGTCAAATTCGGCGTTGTAACCCAGGTGCCAGATGATGCCAATGAGGTGCGCTTCTATCGCGACCAGTCACCTGGACGCGTTAAAAAGGGCATCAAGCGTCGGGGAGAGCCGTCGCCAGGCAAGCACTACGATGGCATTGACCGGGAATCGGCAGGCCTGCTGATCCAGCGTACCGATGGTTCAAAGTATCCCATCTTCATCGGTCTGCTACCCGCAACTGAGCGGGTTGATGGTGCTTTCAGTACCTATGGTCTGAGCACGAAGTCTGGCCCGACATTCCCGAATTTTTGATGGCATTGTAGCTTGGTTTCGAAGCCTGTTGCCCAGGCTTTTTATCCGTAGCCCTGAAGGCGACATGGGTAATGCATGTGCTCTTTAAAAATTTCAGCAATACCGAAAATTGGATTTGATGGTATACTTTTCCAAGCCTTTTTGGCTAAAATTGGGTTTGCGCCCTTTGTTTTCAGGGCTTTTGAAATAAATGGCCTA # Right flank : ATGTAAGGAGCGACCGGAAACATAATCAGACCCTTCACTACCGCCTGGGTAGCCCGGATAGTAGATTGCAAGGTCAGTACGCCTGAGAACCTTTATGCCCCCAGGGCAGCCTGAAGAATAACAACACATCACAGGTGACCACCCATGTCAGACAGTTACCACAAGCTCAACCAAGTCATGCCATCCCATAGAAACACCCTGCACTATGTGGAGTATGCCTCTATCCACTCATTCGATGACACGCTGAGTTTTCGGGTTGCTGAGAAAGGAAAATCCAAAGAGATTTCGATACCACATCGCAATATCGCAGGATTGATGCTCGGCCCAGGAACCAGCTTGACGCAAGCTGCGGCACAAAAACTAAGAGAGGCGAACATATGCGCGATGTTTGTCACGGGGGATGGCGGCAACCCCTTGCTTTGGACGGCGCCGGATGAGTACCGCCCCGGTGAATATTGCCGATCATTTCTGAGGATTTACTATGACGCTGATCTTCGAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATGGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //