Array 1 1158-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYSQ01000002.1 Aeromonas sp. DNP9 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1157 29 100.0 32 ............................. GTATCGCCAATCCAGCCGCGCTTATCGCCGGT 1096 29 100.0 32 ............................. GTGATGGTCTCGCCATAGGTGCCACGGAACGC 1035 29 100.0 32 ............................. TCTGCCTCGGTGAGGTGGCCGATCTCGTTCTT 974 29 100.0 33 ............................. GGATGCAGAGGCACCACCACCGCCATGGCCACT 912 29 100.0 32 ............................. AGGAAACATGGGATGTAGAAATAGTTACTTGA 851 29 100.0 32 ............................. AAAATCGGGACGCCAGCCAGATGGCCGCTTTG 790 29 100.0 32 ............................. GAATGCCTGGTTGTAGGCCATGTTCTCGTGAA 729 29 100.0 32 ............................. AGGCGGGGACATTTGAGGGGCAGGCTGCGATC 668 29 100.0 32 ............................. CGCATCACCGGCATTGATTCCAACAGGCCCGC 607 29 100.0 32 ............................. AGGTGTCACTCTCGGATTCAAGGGTAGGCTCA 546 29 100.0 32 ............................. CAGACTGTTTCAGGCAGTTGGTCTAGCAGAAA 485 29 100.0 32 ............................. TAAAGCACTTTCGCAAAATATTTTACGTGCTA 424 29 100.0 32 ............................. TACCTTGACCGACACCAGCAGATAGGTTGCTA 363 29 100.0 33 ............................. TATGGAGCAACCTCCACAGTACCACCTGTGAAA 301 29 100.0 33 ............................. TACCCTCATGATGACCCTGAGTGGACACTTGAC 239 29 100.0 32 ............................. TATTTATCGCCGTTTCTACAGCTTTTATCTGG 178 29 100.0 32 ............................. TTAGCTGTAGCGGCTACTGCAACACCAGTAAA 117 29 100.0 32 ............................. CCACAAACACTGGTCAGGGCGAACCCCCCATC 56 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 CTGCTCCCCGCACACGTGGGGATGAACCG # Left flank : CCGCTAATTGAAGAGGTGTTTGCTGCAGGGGGGATCACCCCGCCTGAGCCTCCCAAGGATGCTCAGCCACCCGCCATTCCCGAACCGATCGGCATGGGGGACGCCGGTCACAGGAGTCAGTGATGAGCATGTTGGTCGTCGTGACCGAAGATGTGCCCCCGCGTTTGCGTGGTCGGCTGGCTATCTGGTTGCTGGAGGTCCGTGCAGGTGTGTATGTGGGAGATGTCTCGCGCCGTGCACGAGAGATGATCTGGCAACAGTGTGAGGCATTGGTTGAGCAGGGCAATATCGTGATGGCATGGCCTGCTAACAACGACTCAGGGTTTGACTTTCAAACCTTGGGAGCAAATAGAAGGATGCCGGTGGACTTGGATGGCTGCCGGTTAGTCTCATTTCTACCCTTTGAAAATCAATAGGTTATCGTTCATTAACAATCTGGATTAGTTGGTGGCTTTTTTATGGTTTGAAAAAGCCATTTAAATCAATAACATCCATTAAGT # Right flank : GCCCCCGCGCGGCATTGCGGATCTCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30-2623 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYSQ01000019.1 Aeromonas sp. DNP9 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30 29 100.0 32 ............................. CGACACTCAAGGTCTTCGTGTTTTGTCAGTAT 91 29 100.0 32 ............................. GCAGTGCTGCACCTTGTAGACGGTCGCCCACC 152 29 100.0 32 ............................. GAGCAGGCCAGCTCCAGTGTGTTGATGACGTG 213 29 100.0 32 ............................. CTGGAGCGGTCGCCGTGCTCGAGACCTTCCGC 274 29 100.0 32 ............................. TTTGCGGGCGGCGATGGCTATGGGGTGCTCTG 335 29 100.0 32 ............................. CCTCCAGTTTAGATGCCCAGACATACTGGGGT 396 29 100.0 32 ............................. ACCCCGCTCAATGGCGGGGCAGTCTCTTTGGT 457 29 100.0 32 ............................. CAGAGTCACACCAGCGATTGAGCCAATGATGC 518 29 100.0 32 ............................. CGCCATAGAACGCGAGCACAAGAACGCCCAGG 579 29 93.1 33 ...........G....C............ AGCGGGGCAGGGGTCAATTGCAACCTGTCCAAC 641 29 96.6 32 ...........G................. TGGGCATTCCGCCAAGTGCTGTCGATGTTTGG 702 29 93.1 32 ...........G....C............ TGAGTCAGTATGCCCGCCAGCAGCGTTGTTTT 763 29 89.7 32 ...T.......G....C............ AACTCAACATCGCCAGCGATGCAGGCGGAAAT 824 29 96.6 32 ...........G................. CTCGAGGATGCCAGTAGCAGCACAGTCTGGCC 885 29 93.1 33 ...........GT................ CGAACTGGCCCGGGCGCTGGGCCATATCTATGC 947 29 93.1 32 ...........GT................ GCCCCGCCGACGGCGAGACCAGCTAACCGAGC 1008 29 89.7 32 ...........GT...............T ACAATTTGCCTGCTTATGATAAGAACGTGTGG 1069 29 93.1 32 ...........GT................ CCGGATGCAGCGGCAGAGACCAGCGTCCAGGC 1130 29 93.1 32 ...........GT................ GTAAGCCGCTACACCTATGACCGCCGTCATTG 1191 29 93.1 33 ...........GT................ TGCTGACAGGTCTCGCCGCCGTGGTCGGTATCC 1253 29 93.1 32 ...........GT................ CATACGGCGCTGGTATGTCGGTGCTTGATTTC 1314 29 93.1 32 ...........GT................ GTCATTGCCAACGCCCCGTTCGTTCACCGCCA 1375 29 93.1 32 ...........GT................ AGCCTGCTGATGCCCCGCATGCTTGGCAGCCA 1436 29 93.1 32 ...........GT................ AAGTTGCCAACCGGTGAGGCGATGGTGATCGG 1497 29 96.6 32 .............C............... ACTCTCCGCGCCACCGCACCCCGGCGGGGAGG 1558 29 89.7 32 .A.......A...C............... GTCACTCTGCAGCTGCGAGATACTGACAATTC 1619 28 82.8 32 .A.........G.-T....A......... CACATTGACGAAGCGACATGGAGGAAGGTAGC A [1630] 1680 29 89.7 32 .C.T........T................ ATGTTGGAGATGGTGAGCTGAATGGTGTTGGT 1741 29 86.2 32 .C.T........TT............... GGGTTCGTGGAGGACCGCGCTAAGATGAATGA 1802 29 89.7 32 .C.T........T................ CAAATGCAGCATGGACGGGATGTGTCTCTGGA 1863 29 89.7 32 .A.........G....C............ AATGGCCCCTCCTTTGAACTGGTAACAGTTAC 1924 29 93.1 32 ...........G....C............ GGGCCGATCACCTTCATGGGGGCGTCAGGCTA 1985 29 96.6 32 ...........G................. GACGACGAGACGCCTTGGTGCGCTGCGTTCGT 2046 29 96.6 32 ...........G................. ATGCAGCCATCAAGGGCGACTTCGAGGTACAG 2107 29 96.6 32 ...........G................. GACGTAGAGCCGCTGGCCGCCGCCTACAACGA 2168 29 96.6 32 ...........G................. GGCGGCAGCAGCCACTCAGGCCGACGAACGTT 2229 29 96.6 32 .............C............... CCAGCCGCCAGCAGAGCCTTGGTCATAGCGGC 2290 29 93.1 32 ...........G....C............ GCCAGCGCCTTGAGGCCAACAACGTGATAGGT 2351 29 93.1 32 ...........G....C............ CGACAGCGGCGGAGGTGACAACAGCTACCGGA 2412 29 93.1 32 T..........G................. GGTAACGATGTGCTGGCCAAGGGACGCCGCAC 2473 29 89.7 32 .A.......A...C............... AACTACGTCACCGATGTGAGCGATGGGGTTAA 2534 29 89.7 32 .C...........TT.............. GTGCTGATGTACTCGTCGGCAGAGTAGGGGGC 2595 29 96.6 0 ...........G................. | ========== ====== ====== ====== ============================= ================================= ================== 43 29 94.2 32 CTGCTCCCCGCACACGTGGGGATGAACCG # Left flank : ATGGCCAGCCAGCGGATGACTGACACCGAC # Right flank : GTATGTAGATGTTGATCTTGATCTCGCGCGGCGCCCTTCCCCACGCTCGTTGGGATGGAGACAAGCTACAACTCTAAGTGCTCAAATGTCTACCGGCTAATCAACGATGGCCACAGTGCGGAGGACGCATCCCGAATGCTTGGCCTACCGCTGCGAACGGTTAACGACATCCTGGGGATCGAGGAATAAACAAAGGGGCTCACGGCCCCTTTGTTATTGGTTCATCCAGTGTAACCACTATCTCGACAGACTCACCGAAGTGAAGGCGGGCGAGTCTGATTAGTTCTGCCACATCTGGGTAGTTGTCACGGACGTACTGACGCCGTTCTTCCAGTGACATTTCAGCGGACACGCGGCCCCCCTTTTGTCCAATTCACTTCGCCTTGGGCCTCTGTATCTCTTGAGGATTTTAGGTCTCTCAAAATCAAGAGGAAGCCAAGACTCCTTAGAACGCCTGCCTGACTTAGTGAAGTTTAGTCACGACCTTACGGAACCGCGCC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //