Array 1 349832-350713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWK010000001.1 Clostridioides sp. ES-S-0001-02 CD-ESS000102-ESS000102-EN-USA-2017-093-JS_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 349832 29 100.0 36 ............................. ATGGTGGATATGGTGAAAAACTAAAGTCTATACTAG 349897 29 100.0 35 ............................. AAAATAGATTCTATTGAGTTGCCATATGGAAGTAT 349961 29 100.0 36 ............................. ATAAAACTTGCAAAGTATTCTCGAAAGTCCTCCGCC 350026 29 100.0 37 ............................. TCAGAATGGTTACTAGCAAGAAACAAACGACCATTAA 350092 29 100.0 37 ............................. TTGCGACCTTGAAAAATATTAAAAGTAGCATCATAAA 350158 29 100.0 38 ............................. AAAGGTGATTTAGATAGTATTGAAACTAGTGTATACAA 350225 29 100.0 36 ............................. TCGATAAGGGATATAGCTTCGGGAGTTTATTGTAGT 350290 29 100.0 36 ............................. TGAGGTGGAATTTTTAAGTCGTAAGCGTTTTCGCTT 350355 29 100.0 38 ............................. TAGGCTTTTCTCTCCTTGATAGAACAATTATTTATAAC 350422 29 100.0 37 ............................. TAGTCGTTTTTAATTCATGTGCAAAAGCAAATATATT 350488 29 100.0 37 ............................. CTTCTATTCACCTTCTCAACCCCCTTTAAATATTAAT 350554 29 100.0 37 ............................. TTGGAATAGCTAACTTATTCCTTGATATTCTATTTTG 350620 29 100.0 36 ............................. TGGATTGGAAAGTAGAAGAAGTTTCAAAGCTATTAG 350685 29 82.8 0 ................A.AA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 98.8 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAGAGAATGTTTGTTATTGTTACTTATGATGTTGTTGAACCTAAATCACTAAACAGGATTAGAAAAATACTCAGAAAATATTTGACTTGGACACAGAATTCTGTTTTTGAAGGAGATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAAGGTTATTGATAATAGTGAAGATTCTATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGAAATTTATGCTAAAATAGGGTTTAACAGTTGGAATATAAGGCATTGAGAGTGTGTGATAATTATTCTCAATTGCACTACTGTTCGCTCACTGCAAAATTTGATATTTTTATTTAATTGTAATTGCTTGAGTATAGTATTTTCAATGTACTCAATTAGACCTATTTTGGG # Right flank : TAAAACATACATATTCTATAAATAATAATAAGAAAGCAATAAAAAAATGAGGTGAAATAAAATTTATGATAAGAAAATCAAATAACAAAGATATAGAAAAAATAATGGAAATATGGGAAGAAAGTACAATCAAAGCACATGATTTTATAAATAAAGATTATTGGAAAAATAACTACAATACTGTCAAAAACGAATATATGCCTATATCTGAAACTTTTGTATATGATGACGAAGAAGAAATAAAAGGATTTATAAGTATTATAGACAATGAATTTATAGGAGCATTGTTTATAAGTACAAATTATCAAAACTTAGGAATAGGAAGTAAACTTTTAGACTATGCACTTAAAGAATATAAAAATCTAAGTTTAGCAGTATATAAAGATAATAAAAAGGCAGTTGTATTTTATAGCAAAAAAGGTTTTAATATAGTAAAAGAACAAATAAATGAAGATTCAGGATTTAAAGAATATATAATGGAATATAGTAAACAACTTTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11418-11129 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWK010000006.1 Clostridioides sp. ES-S-0001-02 CD-ESS000102-ESS000102-EN-USA-2017-093-JS_86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 11417 29 100.0 36 ............................. GAAGTTATTAGTGCTATTGCAACTACTTTAGTTTGT 11352 29 100.0 37 ............................. GGAGGATATAAAGCTGATTATACGATAGATAGTAATC 11286 29 100.0 34 ............................. ATAGATAAAAATGGAAATGTAGGAAAAACTGTTC 11223 29 100.0 37 ............................. TGATGTGTTACAAGAACTAGTTTCTGCATTTAATACT 11157 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 99.3 36 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAAATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAGGTGAAGAATTAGTATCATATCATGATGTAAACCCAAATCCAGAGCCAAATAAGCATTATAATAGAGATGTTGATGATGTTAATATTATATTCGTTCCATCAGAGAATAATCCTTTTGACAATGATGTAGATGGAATAAATTAAACATAAATATTTATTATAATGAGCTAAACCACAAATTGATATAAATATTCAAAAATAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGGCAAATTAGGGTTTAACAGTTGCAATGTAAGGCATTGAGAGCATATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATATGTGTAAGTATTGAAAATACTTGGTTTATTTTGGG # Right flank : AATTTTTAAAGAACATAGAGATAGACTAGTATTTAGCTAGTCTATTTTTTATTTGATAAAATTGTATTATTCATTGTATTTTTAACTAACATAAGTTTTTCTTATTTCTTTTCGCCATTTCTTCCTTGCCATAAAGGTCACATAAATATAAAAAATCCTCTTCTAATGCAATAGATAAGTCTACTATTGTGGATATTGTTATGTCTTTATATTTACCATTTTCCAATCTTGAAATTTGACTCCTATTCCAACCTAATTTTTCAGCTAACTCTAATTGTGTCATTCCTTTGTGTTTTCTTAATTTTCTTAACATTTAATTTAACCTCACTTTTAATTATTTTTATAATTAATAGTTTGTGTAGTTTTTTGTAATAAATGTGCTTGAGTAGCACGTTTTTTGTTGGAAATTTGTGCTAAAATATAAGTAAGAAATAACTCTATCTAGCTAGAGAAAAAGTTAAACGATTAAATTTTTTATAATACAAAAACTAAATATGTAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 36488-35999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWK010000016.1 Clostridioides sp. ES-S-0001-02 CD-ESS000102-ESS000102-EN-USA-2017-093-JS_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 36487 29 100.0 37 ............................. TCATAAGATGTCATATTAACACAATTTTTATTTTTTA 36421 29 100.0 36 ............................. GTATAAAGCTTGAGCTGATTTTGGAGTAATAACATG 36356 29 100.0 38 ............................. ATATCTGCATCTTTTAATGTTAAGACTACTCAAACAAC 36289 29 100.0 37 ............................. TTAGTATTAACAAGATCTGTAACATCTCCAGCAACTG 36223 29 100.0 38 ............................. TAATTAGTAACATCAGCGTATGCAAGTCTTTTTTCATG 36156 29 100.0 36 ............................. CTTCTAGGTCATATGCTTTTACACCATCCAGTTTAT 36091 29 100.0 35 ............................. GGATTTAGTGCTGCCATGTCTTCAGCTAATTTTAC 36027 29 79.3 0 ....................A.AAC.G.G | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 97.4 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TCATATAACATCTTGGTACATAGTGTTGTTTTACTGTAATTTGATTGTTGTTCAAAATTTAACCCTCCATGTTTTTAATCTTCTAATTGTTTTTATATTAGTAGCTTTAAATTAATCAATCTCTAATTTTTTTATGTAACAATATTTATATTATAATCCATTTTTCATATTGATAAATGATAAAATTGTTTAACTAAGTCAAAATAATGTATATTTAAATGTATTTAAAGTTTATAAATTAAATTTATTTTCAATGTCAAAAAAATTTGTTTTCTATATCTAATTTGATTAAAAAACTAAAATTTTGATTAAATAAACTATGATATAATAAATATATAAATATGCAGTGTGCGATATTTCGAAAATAAATGTTGTAATGATTGTAAACACTGAGTTGTAATGTGTTTTTGAAAAATATCAAAAAGCACTACTTGTGGCTCACTGCAATTTTTAATATTTAGTCTTGCTGAAAGTATTGAAAATGACAGATTTATTTTGGG # Right flank : TAATTTTTAATTACTCTGTTTTTTATTTACAAATTTAAGATAATAAAATTTTATATATGGTAAAAAATGGAAGTTAATTATTGTGAAAATAGGTACTATGCTTGTAGTATAAAGAAGATATATATCGAAATAATACATATAAACTATGTACGTAAAACAATTTTAAAATAATCATAATTTTACTTTCAGATTTAAAACTCATCTTAGGACATGACATATACAATCAAAAATATAGACTATATTAGTTTTAAAACTTAAAAATCGAAGAAAAGAGTCTGTTGTTTTTCAAAAGTGGGGTAATTGTAAGAATATAAATCAGAATATTTCGAAAATGTGGGGGATGATTCTTATGGAAGATTTAAAAAAGGAAATTATAAATTCAATTGAAAATACAAACGATGTAAAAAGATTAAAATCAATATTAATATTTATAAAAACAATTCTCAATAAATAAAGCCGTTATTTCAACGGCTTTATTTATCTAATTCTTTCACAAAATC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 17854-17432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWK010000018.1 Clostridioides sp. ES-S-0001-02 CD-ESS000102-ESS000102-EN-USA-2017-093-JS_98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 17853 29 100.0 36 ............................. GTCTGTAGCATTTAATGAAACAACTTCTTTTATTGT 17788 29 100.0 36 ............................. AAAGGAATAGATGCAATCAAAAAATTAGGTGGCACA 17723 29 100.0 37 ............................. AAAGGATTTAATGAGGTTCAAATAACAACTAGTGATT 17657 29 100.0 37 ............................. TTAGCTGTGCTATTCATAGTACTCATAATTTCATTAA 17591 29 100.0 36 ............................. AAAGAAGAACGAATAAAAATTGAAACTAATGTAAGT 17526 29 96.6 37 ...............A............. GTCGGACTTATTATCATAGATATCCCTTTTGCCAAAA 17460 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.0 37 GTATTATATTAACTATGTGGTATGTAAAG # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAAGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTTGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATGATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTTCAATTTCTTATATACATTGGATGTAATCATTGAAAGTACTATGATATAAGCATATTTTGTGATATATCAGAAACACTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGGATTTAAAATGCTCAATTTATTTTGGG # Right flank : ATTGTTTTAAATTGATTAAGTACATCTGTTGATTTATATTATATTAACTATGTATTGTACAATTAAATTAAAAAATATATTTGAGTTAGAGAGGTAGTATTTTATGTCGTTATTTGGAAGTAAAATTACAAAAGAAGAAAAAGAGAAAAATCGAGAAGAAACTGCAAAGTATTATGAAAGACTTAAAAATATGACAAAAGAAGAAAAAAAAGAGTATGAAATTCAAGAATTTATGAAGAAATATCAGTTAGAAAATTTAGATGAAAAAGATTTAATAGTGTTAAAGAGAATAGCAAGTGATTTGTTTGGAAATGGTCTTATTAAGGCAGGTATGGCTTTAAGCTTTACTGATGCAAAGGAACAAGCAAAAATAGGATACCTTAGTGCTTTAACAGAACAAAATTGGATGATAATTAGACAGTTAGCTCAGTTGAATACCAATATAGAAAAACTTATAGAAGATAAAAAAGAATAAATTGAAAATAGCAATACAGACACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //