Array 1 25322-26449 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGR01000044.1 Escherichia coli strain MF7 MF7_BDMS190049488-1a_1.clean_(paired)_contig_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25322 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 25383 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 25444 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 25505 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 25566 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 25627 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 25688 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 25749 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 25810 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 25871 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 25932 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 25993 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 26054 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 26115 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 26176 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 26238 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 26299 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 26360 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 26421 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1317-555 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGR01000010.1 Escherichia coli strain MF7 MF7_BDMS190049488-1a_1.clean_(paired)_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1316 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGTGATCCGCA 1255 29 100.0 32 ............................. CTTGTGCTTAGGAATAGTCTTAATTTTGTGTA 1194 29 96.6 32 ..........T.................. ACATTACGACCGGCGATTGTTCCGACGCGGAT 1133 29 100.0 32 ............................. CCTGTGAGCCTGTCAGCGTCGAATAAATATAA 1072 29 100.0 32 ............................. ATTTTATTATCGGCGAAACCAATTGCACGGCT 1011 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 950 29 100.0 32 ............................. CCCCCGGTGATCGAGATTCCAGGCGGGGAAAC 889 29 100.0 32 ............................. ACCCGATCAATCAGTCGTTGTATCCAGCGCTC 828 29 100.0 32 ............................. TACCCGAACCGCTCCCCGCACCATGCTTTATC 767 29 96.6 33 ............G................ AATTCCGAGCCTTTCGGATACGTTTCAGAACGC 705 29 100.0 32 ............................. CATCACGAACCCGCTAAAGTCCATTCGGTAAT 644 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 583 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTGCTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTAATTCTAAAGACATCGAGTGTAGTTAATAGGTGATGCTGCCAACTTACTGATGTAGTGTATGATGGTGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //