Array 1 38086-37440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYQ01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 38085 36 100.0 37 .................................... AGATAAAGCACGTCATGTGGCATCAGAACAGACGGGT 38012 36 100.0 38 .................................... CGGGCCTGCTGGGTGTCGGGGTCGGGGTCGTCCGACGA 37938 36 100.0 36 .................................... GACAGGTACGCGACGACGAACCCGCCGATGCCGGTA 37866 36 100.0 36 .................................... ATGTCGGCGCGCTTCGGCCTGGTGCTGCCTCTGCGN 37794 36 75.0 49 NNNNNNNNN........................... TCGGCATGATGCCAGCGCCGATTATCGTGAGCGTANNNNNNNNNNNNNN 37709 36 69.4 51 NNNNNNNNNNN......................... AAGATGAGCGGGCCGAGGGGTTCGACCCGGGACNNNNNNNNNNNNNNNNNN 37622 36 75.0 40 NNNNNNNNN........................... AGGCGCCAAGGGAATGCGCTTCTACAACCGCGTCACGCTA 37546 36 97.2 35 ...................................A GCGAAAGAGCGATCATTCCGGGTATGGATCAAACC 37475 36 94.4 0 .......A...........A................ | ========== ====== ====== ====== ==================================== =================================================== ================== 9 36 90.1 40 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : TGAGGCCTGCCACCTGGGCCATCAATCCGCCACCCGTTNNNNNNNNNNCCTTCTGGAGGGGCCCTTCATTGAGGCAGGTCGCAGCTGCCGGTGATCTTGCCGAGGGTCTTGAATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGTGCCATGTGGACCCCTCACCCCGACAAATTTCCTCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCATATCAACGACCAGCATGTCAACATTGACAATGGNNNNNNNNNNCCTTCTGGAGGGGCCCTTCATTGAGGCGAGCGTTGCCAGGCGGTGAAGGCTTTGTTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGGAGGGGCCCTTCATTGAGGCGTCGAATCAGGGAAGTAGGCGTTCGTTGCCGTTCAT # Right flank : TTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGGCAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGGG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NNNNNNNNNCCTTCTGGAGGGGCCCTTCATTGAGGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 38294-38537 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYQ01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 123, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================== ================== 38294 27 100.0 45 ........................... NNNNNNNNNNCCATTGTCAATGTTGACATGCTGGTCGTTGATATG 38366 27 100.0 45 ........................... AGGGGCAATGAGGAAATTTGTCGGGGTGAGGGGTCCACATGGCAC 38438 27 100.0 46 ........................... AGGGGCAATTCAAGACCCTCGGCAAGATCACCGGCAGCTGCGACCT 38511 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================== ================== 4 27 100.0 46 GCCTCAATGAAGGGCCCCTCCAGAAGG # Left flank : NNCGCAGAGGCAGCACCAGGCCGAAGCGCGCCGACATGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTACCGGCATCGGCGGGTTCGTCGTCGCGTACCTGTCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTCGTCGGACGACCCCGACCCCGACACCCAGCAGGCCCGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATACCCGTCTGTTCTGATGCCACATGACGTGCTTTATCTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATATGAACGGCAACGAACGCCTACTTCCCTGATTCGACGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAACAAAGCCTTCACCGCCTGGCAACGCTC # Right flank : GNNNNNNNNNNAACGGGTGGCGGATTGATGGCCCAGGTGGCAGGCCTCAATGAAAGGCCCCTCCAGAAGGAGGGGCAATTCGAAAGTCGTCGTGCCCTCAAGCGCCCCGAAAACAGGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATAGGCGAGTGCTGTCATCGCTTCGAGCCTCGCCCTCCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTCGCCGTGCGACGCCGACGAATCTCGCGGACCCGCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCCCTTGAATGGTGATGAGCTCGGCATCTGTGATCTCGGGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNGCGTGGTCCCAGTGATTCGATGAGCCCGAATCGCGTTGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGTTCCACAGCGTCCTGCCGGGCCTTCTCCCATGCGCCGCCTCAATGAAGGGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 38580-38834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYQ01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 38580 36 97.2 38 ...........A........................ TCGAAAGTCGTCGTGCCCTCAAGCGCCCCGAAAACAGG 38654 36 100.0 37 .................................... AGGCGAGTGCTGTCATCGCTTCGAGCCTCGCCCTCCC 38727 36 100.0 36 .................................... TCGCCGTGCGACGCCGACGAATCTCGCGGACCCGCC 38799 36 94.4 0 .................................CC. | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 97.9 37 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : GGCAATATGAACGGCAACGAACGCCTACTTCCCTGATTCGACGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAACAAAGCCTTCACCGCCTGGCAACGCTCGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNCCATTGTCAATGTTGACATGCTGGTCGTTGATATGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGAGGAAATTTGTCGGGGTGAGGGGTCCACATGGCACGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTCAAGACCCTCGGCAAGATCACCGGCAGCTGCGACCTGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNAACGGGTGGCGGATTGATGGCCCAGGTGGCAG # Right flank : TTGAATGGTGATGAGCTCGGCATCTGTGATCTCGGGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNGCGTGGTCCCAGTGATTCGATGAGCCCGAATCGCGTTGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGTTCCACAGCGTCCTGCCGGGCCTTCTCCCATGCGCCGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCGGGTGGGTGGTTGTCGTCGGGCGGCGGCGGGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNCAAGTCTCCAATAACATGAAGTGAGTCCGTGTCGGCGCCTCAATGAAGGGCCCCTCCAGAAGGANNNNNNNNNNTCCGCCATCCCTTTTCCAGCCAGGCATCGGGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 40277-40442 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYQ01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 40277 25 100.0 46 ......................... GGAGGGGCAATGAACCCGGGCCAGTAATATCAGGAATCTTAATCTT 40348 25 100.0 45 ......................... NNNNNNNNNNAACTCCAGCTGATTGATCGCAATCAACTGAGCCGT 40418 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================== ================== 3 25 100.0 46 GCCTCAATGAAGGGCCCCTCCAGAA # Left flank : TGGTTGAAAGGGTTCGGGTCAATCGTCGCGACGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTATGGGACCGATCGAGGTGACGGCATGAACCGCACGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNGGACAGTCCCCGCATGATGTTGTCCGGATTGCCTCAATGAAGGGCCCCTCCAGAAGGANNNNNNNNNNATGGGAGGTGTGGACATCTCCAGCCTTATTGCACGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTTTCCGTATCTACGACACCCAGTTTGCTACGGAATGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGGTGAGCGGGAAGGGCGCGAACAGCTA # Right flank : AGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGTTGATGTCGTCAAAGGCCATCGCAGCCGCGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNCGGTGCAGTTCGTCGCCACCGTTGAAATCGACAGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGTGCCGGGCTCCATGTCTGGGGTGTGGGCACGCCTCAATGAAGGGCCCCTCCAGAANNNNNNNNNNTCGGGGATCGTCATCGTCACATGGGCCGGTCACGTGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 5 41230-40684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYQ01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================================================ ================== 41229 26 100.0 45 .......................... AAGGCGCGCGCCGGTGACTGGGCTGTGCTTCTGGAATTGCCCCTC 41158 26 100.0 46 .......................... TCAGAAACGGAATAGTCCTGAACATGCCGTTGTTCAATTGCCCCTC 41086 26 100.0 40 .......................... TCAGGGTTACTCATTGCGGTGCCTCTCCGNNNNNNNNNNC 41020 26 100.0 76 .......................... ATTTCGGAATATGTCATATCAGAAGGATGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC 40918 26 100.0 44 .......................... ACGTGACCGGCCCATGTGACGATGACGATCCCCGANNNNNNNNN 40848 26 96.2 43 N......................... GTGCCCACACCCCAGACATGGAGCCCGGCACCAATTGCCCCTC 40779 26 100.0 44 .......................... CTGTCGATTTCAACGGTGGCGACGAACTGCACCGNNNNNNNNNN 40709 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================================================================ ================== 8 26 99.5 48 CTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : TTGAGGCTTCACGCGCTCCATATCCAGCTCCAAATCATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTCTGGAGGGGCCCTTCATTGAGGCCTCGACACCGGCTACGTGTGTGAGCACGACCATTTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTCGTCCTCCTGGGGGCTGTCGCTGTCAGCTTCNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCTGGAGGGGCCCTTCATTGAGGCCGCTCATGGCTCCCGGCGTGGCCATCTCCGCCAGCGATTGCCCCTCCTTCTGGAGGGGCTCTTCATTGAGGCTCGTTGAGAAAAACGGTGCGGGTCTTTAGCCCCACCGTANNNNNNNNNNC # Right flank : GCGGCTGCGATGGCCTTTGACGACATCAACCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCTGGAGGGGCCCTTCATTGAGGCACGGCTCAGTTGATTGCGATCAATCAGCTGGAGTTNNNNNNNNNNTTCTGGAGGGGCCCTTCATTGAGGCAAGATTAAGATTCCTGATATTACTGGCCCGGGTTCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTAGCTGTTCGCGCCCTTCCCGCTCACCTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 6 41352-41540 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYQ01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================================== ================== 41352 34 97.1 50 ...........................N...... NNNNNNNNNNNNNNNNNNGAAGCTGACAGCGACAGCCCCCAGGAGGACGA 41436 34 82.4 37 ............................GGGGCA ATAAATGGTCGTGCTCACACACGTAGCCGGTGTCGAG 41507 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================================== ================== 3 34 93.2 44 GCCTCAATGAAGGGCCCCTCCAGAAGGANNNNNN # Left flank : NNNNNNTCGGGGATCGTCATCGTCACATGGGCCGGTCACGTGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCATCCTTCTGATATGACATATTCCGAAATGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNCGGAGAGGCACCGCAATGAGTAACCCTGAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGAACAACGGCATGTTCAGGACTATTCCGTTTCTGAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTCCAGAAGCACAGCCCAGTCACCGGCGCGCGCCTTGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNTACGGTGGGGCTAAAGACCCGCACCGTTTTTCTCAACGAGCCTCAATGAAGAGCCCCTCCAGAAGGAGGGGCAATCGCTGGCGGAGATGGCCACGCCGGGAGCCATGAGCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGATGATTTGGAGCTGGATATGGAGCGCGTGAAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGTGGCATTGGTGGTCCCGTAGTCGATCCCCATGGCTACGCCTCAATGAAGGGCCCCTCCAGAAGGANNNNNNNNNNATCGCACCTGCGGACTAGTGCCCGCGTGATGTCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTGAAGAGCTCAAGAGCTCGATTCTTCGGCTGGCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTCTCGTCCATATGGCTACGAACCCAAGCGTCCTGACTGCCTCAATGAAGGGCCCCTCCAGAAGGA # Questionable array : NO Score: 4.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGANNNNNN # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 41723-42367 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYQ01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================== ================== 41723 36 100.0 38 .................................... GTGGCATTGGTGGTCCCGTAGTCGATCCCCATGGCTAC 41797 36 77.8 35 ............................NNNNNNNN NNATCGCACCTGCGGACTAGTGCCCGCGTGATGTC 41868 36 100.0 35 .................................... TTGAAGAGCTCAAGAGCTCGATTCTTCGGCTGGCC 41939 36 100.0 37 .................................... TCTCGTCCATATGGCTACGAACCCAAGCGTCCTGACT 42012 36 77.8 33 ............................NNNNNNNN NNCAAGGATCACCGGCCTGGGCCACCGGAAATG 42081 36 75.0 44 ...........................NNNNNNNNN NNNNCCAGCAAGGTGTCCTTATTGTCCAGACGCCCCAGCTGGCA 42161 36 80.6 36 .............................NNNNNNN NNNCGTCACACCCGGCACGCGCTCACCATCCAGCAC 42233 36 72.2 63 ..........................NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACACTACCGTCGACATCCTTGCCTTCCTC 42332 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================================== ================== 9 36 87.0 40 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : CCAGAAGGNNNNNNNNNNTACGGTGGGGCTAAAGACCCGCACCGTTTTTCTCAACGAGCCTCAATGAAGAGCCCCTCCAGAAGGAGGGGCAATCGCTGGCGGAGATGGCCACGCCGGGAGCCATGAGCGGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCTGACAGCGACAGCCCCCAGGAGGACGAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATAAATGGTCGTGCTCACACACGTAGCCGGTGTCGAGGCCTCAATGAAGGGCCCCTCCAGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGATGATTTGGAGCTGGATATGGAGCGCGTGAA # Right flank : TGGCGGGCGTGGGAACAGGGCTCCCACTAGGCATTATACCGGCCGCCTGCGAGCGGTGCTGAAGAAGGATGGCTCGCGCGTGGAGGATTGATGACCCCTTCAGCGCAATCTGCTTGTGACAAGGGGAAACATCACGCGAGCGGCTCTGCGTGACAACCGGGCCGCAGAGCCGCTGGTCGTCAGATGATGATGCTGCGTCCGCCGCTCTGGTACCTCTGACCGCCCAACCAGGTGATGCGTTGGGCGTCTGCCGACGTGGACATGCCCAGGTCGCAGATCACCACCGAGTCCTCATCAATATCCATCGCGTCGGTGAGATCGTGGCGTAGCACCAGCAGGTGTGACGGCGGACAATCAACCATGAATACGCTGTACTGCACACGCTCCCCGTAGCCCTTCAGTACCGTGGCCAACCTGGTGCGACGACGGTCATCGGGCACGTCGTAGGCGATCAGAAAGCAATGGGAATCTCGTCGGCTCATCTGACCGTCATTCCTATA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGANNNNNNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //