Array 1 1510835-1511535 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOIC01000001.1 Erwinia pyrifoliae strain YKB12328 contig00001:10529.EPY123.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1510835 29 100.0 32 ............................. CCTCGCGTCCGTGCGGGGCTTTGCTATCATTA 1510896 29 100.0 32 ............................. TTTATGACGCTGATTATTATCAGGCTAACCAT 1510957 29 100.0 32 ............................. CCGGAAATTTATTTGTGAGTCGGGGAATTTGG 1511018 29 100.0 32 ............................. CGGGTTAAATGACGTCATGGCGACAGCATGAA 1511079 29 100.0 32 ............................. AGTATCGAATAACGTTACCGTGGCCACCATCC A [1511100] 1511141 29 100.0 32 ............................. GGGAGAACTTGCTTATTATCTCAAACAAAGCG 1511202 29 93.1 32 .............A......T........ CCGTGTTGAAGCCATTGGTGTTACCTCTATTT 1511263 29 96.6 32 .............A............... GACGTAACAGTAAATGCGCCGGTTCGCGACAA 1511324 29 100.0 32 ............................. AGGTTAGAAACGAACAAGTCGGCATCAACGCC 1511385 29 100.0 32 ............................. CTTTGATGATAATTTTCTTGCTTCTATTACTA 1511446 29 100.0 32 ............................. TCCCGCTTTCACACAGGCCGGGATTAGCCGCT 1511507 29 93.1 0 ............CC............... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AAAAGGCAGGGGCGGTTAACTCCCTGTCTTTTTCAAGTTCCTTCAACCCTTACGGGCGCCCGGTCAGTTGCTTAATGGTAACGATAATCAGCAAACTGACGTGCAGTATCTGCAACGTCAGCAGGATTGCTCCCTGCGTTATCACCTGCATCTCCTTGATAAAGGAGCGTGCGCGCAGCCGGTGAATGCTGTTGGGCTACCCTTCACGGCGCGTACCGGTTGTTAGCAGGTACAGGCAGCACCGTTGCGCAAAGCGGCCACCAACCGCTGCGGAACAGGAATCAACCCGGTCTTACAAACCGGTTTTTTTTCGTCTTTACGCTGCCATTTCCGCTATATTGAAGATGTTCACTCAGCCGTTTGCCCCGCATATGTGGCCGTGTATCAAGCCGATTTTCCCTGCTTTAAGTCGCGAATCCGTGCGCGCTTTAGAGTGGGAAAAAGTTGGTAGAAATATGGAGTGGTAAAAAACTTTCTAAGATCAGTGAGATAGTTTTAGA # Right flank : GCTGGTACATTTATCCCTACCGTTCTATGATTAATGCGAATCGCACGATCTGTGCTAATAGCATGATTAAGGAGGAGACCATGTTAAGTTTTACCGCCAATCAGGCGAAAACGCAGTTTGGGGATTTGATGACCAAAGCGCAGCGTGAGCCGGTTAGCATCACCTGTAATGGCCGTCCTGCGGTTGTTGTCGTTCCTGCCGAAGATTACGCGGTGCTTGAACAGCTGAAGCTGGAGGCTTTACGAACCAGGCTGACCCGCTCCATAGCCCAGATGGAAGCCGGACAGGTTCACGATGGTGACGCGGTGTTCGACGAGTTGATGAAGGATCTGTAATGGGAAAATTCACACTCACGGATGATGCTAAAGAGGATATGAAGGAAATAAGGGCATATTCTGTTCAGCAATGGAATAAGGAGGTGGCGAAAGTCTACCTGGAAGGGATGCGCCTTACCATGCAGATGCTGGCGAATCATCCTGATATTGGTGATGATGTCAGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1521656-1522662 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOIC01000001.1 Erwinia pyrifoliae strain YKB12328 contig00001:10529.EPY123.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1521656 29 100.0 32 ............................. CCTTCCAGCCCTCTGAGTGAGGGCTTTCCGTA 1521717 29 100.0 32 ............................. GCTTAATGCCTTTGCCGATGCATTTTCCTTTT 1521778 29 100.0 32 ............................. ACAGTCAACCAGTACCACTCCATTTTTTTCGT 1521839 29 100.0 32 ............................. AAAGTTTGGCAGATGCGCTACAAGATTGAAGG 1521900 29 100.0 32 ............................. GAAAAAATATCCGACCTCCGCGAAAAGCAGGA 1521961 29 100.0 33 ............................. CCTGGTTGTAGGAGTGGGGCCGACCCGTACCGG 1522023 29 100.0 32 ............................. GCCACTAGAATCAGCAGCCCGCATCAATTGCC 1522084 29 100.0 32 ............................. ACGGATGTTGATATTGGGGACGTAATAGGTTG 1522145 29 100.0 32 ............................. CTGGTTGCGTGTTGATGGCTCATGCCGTAATC 1522206 29 100.0 32 ............................. GTCAGGTAAAAGGACACTCGGTGGAAATAATT 1522267 29 100.0 32 ............................. CATGGCCACCCGGCCAACCACGATCCAGTTAT 1522328 29 100.0 32 ............................. CTGCAATAGCAGTACTCGTGCCTTTTTCTTAT 1522389 29 96.6 32 ............................A TATGAATGAATATCTACGCAGTAAATGGGAAT 1522450 29 100.0 32 ............................. GTGATCTGCGCTGCTTCTGCCACTGTGCATTC 1522511 29 100.0 32 ............................. TTGTCGCAATCGCTGCTGGTGAGTGGTTCGTG 1522572 29 100.0 32 ............................. TGCGGGTTGGCCAGATTGGGCGCACGGCTCAT 1522633 29 96.6 0 ...........A................. | C [1522638] ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : AACGGTGCTTGCCGCCGGAGAGATATCCCCACCGCCACCCCCACCGCCACCCCCGCCGGATGCCCAGCCGGTTGCCATTCCTGAACCTCAGTCGCTTGGCGATGCAGGGCACCGGAGTTCGTAAAATGAGTATGCTGGTGGTGATTACTGAAAATGTTCCTCCCCGCTTGCGGGGACGTCTTGCCGTGTGGCTGCTGGAAGTGCGTGCGGGCGTGTATGTGGGTGATGTTTCGCGCCGCGTCAGGGAGATGATTTGGCAGCAGCTGGATCAATTATACGAGGAGGGCAATGTAGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGGGAGAATCGGCGTCTGCCGGTGGACCTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTTTGATAGGTGAAAACGGTGCTTTTTCAGACAGGATAATCTGGTAGATTTTAGCGGGTGGAAAAAACCTTTATAATTTAAGTGGTTGGTTCTAGA # Right flank : GATGAAGGTCGTTACCACGCAATATGTATTATTGACAGATGCTAAGCGGGCCTCCTTTTAAACCAGCCAGAATACAGCTATCTCTGTAGCGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGTGGGTCGATATATTTCCCCATGCGTGGGTCGCTGGTTAAAATGCCTGCTATTCTGAATGACTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGCGGCGTTCAGTTTCGATAGTTCTTTCTGAAGAAAATTCATCTATTTTTCCCTGTGGACCACCAATTGATACTTGTGCAGAGTACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGACTGATAATATACCGGTCAGGTTCATCGTAAATGATAATGCTTTTAGAAATGCAATCCTCCATATTGGAAAGTATTATCCACGGGGCGAAGAACCATCCGCAAGAAAATAATATGACGGCGGCAATAAAGAAGTAACAGCGCCTCATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1531990-1532839 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOIC01000001.1 Erwinia pyrifoliae strain YKB12328 contig00001:10529.EPY123.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================================================================================================================================== ================== 1531990 28 100.0 32 ............................ ATCACCGCTTCCCCCCTACCTTTGCAGTCTCG 1532050 28 100.0 32 ............................ TGCCGGACAGCGTGATGATTTTCAATAAACCA 1532110 28 100.0 32 ............................ GTTCCAGGCTTGCCGCACATCACCAGCCCACC 1532170 28 100.0 32 ............................ CCCGTTGTGGCTCAAAGCCGGAGATCAGCACC 1532230 28 100.0 32 ............................ TCTACGGCGAGTAGAAAATAACTATCAAGCAG 1532290 28 100.0 32 ............................ GGAAACGAACAGCGTTTTCCACTGCATTAATG 1532350 28 100.0 32 ............................ CATTCGTCTTGCCATCTCTTCGACCGGCAGCA 1532410 28 96.4 32 ...........T................ CGGGATAGCGCCGGGAAAATCAGTTGCAACGC 1532470 28 92.9 32 ...........T.........C...... CTGAAACCGTCAGGTTCCGGGTACTTTTTCTT 1532530 28 92.9 195 ..............T.C........... TAGACCGGTGCTTTTTTCTGTGAGCCGGTAGAGGTTCCCTGCCGTACCGCCAGACAGCGTATAGCGTTAAACACGCTCCACACCGGCTCTTTTAAAATAAATTCCCTCATCCATAGCTATATCAATTATTGCAGATCAGAAAAAAATATCCACTGGCGCTATCATCAGATCAGGCGTACGATGAACGGGTTGAAA 1532753 28 82.1 32 T..T.....T.A...A............ ATAGCGATATATATTATTGATAGTTAATGATT 1532813 27 82.1 0 T..........TG.......-...T... | ========== ====== ====== ====== ============================ =================================================================================================================================================================================================== ================== 12 28 95.5 47 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTTTAATAGGGATAAACCTTCATTTGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCGGGCGAAGGCGATGAGATGCTGCACCCGTTCCATATTCACGGCACCCAGTTCCGCATCCTGTCGGAGAACGGCAAGCCCCCGGCCGCGCATCGTAGCGGCTGGAAAGATACGGTGCGCGTTGAGGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAATCACCCGGCAGACAGGGCGCATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATACCGGGATGATGCTGGGTTTTACCGTAGCGTAATAAAAGTGGGTGGCTGCAGCGGGATAATTGTCGGAACATGGTTAACGCCTCGCGTACCCTTTTTTTTCGTCCGTCCTCAACCTATTGATTTATATCGCGTGGTTGTCAGGGTGAAAAAAAAGGGTTAAGCACAATAAAGTGGAAAAAAGTGAATGCGGTAAGCCGTTTAGCGCTGTAGAGTAACG # Right flank : ATATATTTGCAACGGTTCTCGCTGCCTGCGGTTGCGTTAAAACCGTATTGAAAGATAAGCAAAGAGGTATGTAACTTTCCAGCCAATATCATCATTTCACAGATATCCGGGAAGCAAATAACCGCTTCACAAGGAAGCGCCATATGGAAATGATTAAGCCCTCCGATTTAAAAACCATTCTGCACTCAAAACGTAGCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTGAACGGCGGCCGGGTGGAATATGTTACTGACGAAGGTAAACAGTCTCTGTACTGGAATATTCCTATCGCCAACACCACTGTGGTGATGCTGGGTACCGGTACATCGGTAACCCAGGCGGCGATGCGTGAGTTTGCCCGCGCCGGGGTCCTGGTCGGGTTTTGCGGCGGCGGCGGAACTCCGCTGTACGCGGCCAATGAAGTTGAGGTCGATGTCTCTTGGCTGAATTCACAAAGTGAATACCGCCCCACGGAATATCTTCAGCACTGG # Questionable array : NO Score: 4.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-1.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1542372-1542699 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOIC01000001.1 Erwinia pyrifoliae strain YKB12328 contig00001:10529.EPY123.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1542372 28 100.0 32 ............................ TCGGCGCTGCCGCTGCTCAAACTCGCCGTGCT 1542432 28 100.0 32 ............................ ACCATCACTGACAGCGAAGCCCGGAATAAACC 1542492 28 96.4 32 C........................... AGTCCCGGCACCACCTCAGCGCCCAGCCCTGT 1542552 28 100.0 32 ............................ AGCTAGAGGGGGTAAATAGCGTGGACTACAGC 1542612 28 100.0 32 ............................ AAGTCGCGAACAGATTTCGGGGGGTTTTTGCA 1542672 28 89.3 0 ...........C............TT.. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGATTTAAGCGCACTACAGCAAAGCGGCTGGAATAAGTGTCTTAGGGATTATATCGCCTGTAGCGATATCGCCCCGGTTCCGAAGGGGGCGGCGTGGCGCACCGTCCGGCGCGTCCAGGTGAAAAGTAGCGCTGAACGCCTGCGCCGCCGTTCGGTAAATAAAGGCTGGCTAAGCGAACAGGAAGCCGCAGAGCGAATCAGCGTACTCAACGAGCAGCGCAGTAATTTGCCGTTTTTGCAGATAAAGAGTGGTTCTAATGGTCAGGCCTGGCGGCTGTTTATTGAACATGGCTCGCTGGTATCTGCCCCCAGCGATGGCAGCTTTAGTTCCTATGGGTTAAGCGCCGCTGCTACCATCCCCTGGTTTTGACCCTTTTTTTTCGGCTAACGCTAACCTGTTGATTTCAGGTGGCGTTAGCATAGCGGTTTAAAAAAGGGTTTTACTGCGCATTTTAGGTTTTTAACTTGTTTTATAGCGAGTTAGTCTGCTTTACTAACG # Right flank : AGGATTCAATAACCCATTCCCTTGCCTGAGTGTATGCTATGCACCACGGGCTTCTCGTTAAATGCACATTATGCTGACAGGCAGAAAATATGTTATCCGTGGCGCATCTCTGGCAGCGCCAGCTGTTCCATCGGTGCGCCTGACCTTACCTGTGCAGTGCAGTCTCACCGCCGTTGTATGCGGAAATTATTAAGACGGTTGTTTCACGGCAGTTAAATCAGCTGAATGTAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGCATTTTTATCGCGGGTTTTTTCACGGTTTTTTTACAACTCATTAAGAATAATCTTATATATATTTTGTGCTCATCATTTCGGTGTTGAGGTTGTTTTTAGATTTTTTCGATCAATAATTTCCGGAATTTTCACTTGGAGTTGGCCATTTTTTTTTCTTCTTTTTCTTCGATAGTAGCTTCGCCGGTAGTGCAATTGCCGTTTTTTGATTTGAATGAAATGCAAAGTTAAACTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //