Array 1 8281-13486 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNJT01000111.1 Xanthomonas oryzae pv. oryzae strain GX5 scaffold110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8281 31 100.0 34 ............................... GCGTTGGCCGTAGTCCTCCCGTCAATTGTGGTAA 8346 31 100.0 36 ............................... TCGTCTCCGTCTAAGTCAATCCAACTTGTTGGTGCT 8413 31 100.0 35 ............................... TTGATGAAGCCGGCCGGGTGGCCGTCCAGGTGGCC 8479 31 100.0 36 ............................... TGTAATCCTCATTAGTTGGTTGGGTGTGTTGCTGGG 8546 31 100.0 34 ............................... GCCTTAAAGGGGGAGATACATATGTCAATGCTGC 8611 31 100.0 36 ............................... CCGCCAGAGCGCCTTGCCTGCGAACTTTCCGTGGTC 8678 31 100.0 34 ............................... TTGCGATCAACACAGATCTGTGCTCTCCATTTCT 8743 31 100.0 34 ............................... GGCGCCAGCAGCATCAGAATTTATTTGAGGTTGT 8808 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 8875 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 8940 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 9006 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 9070 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 9134 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 9199 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 9263 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 9328 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 9392 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 9456 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 9521 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 9585 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 9652 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 9716 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 9783 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 9848 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 9914 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 9979 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 10043 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 10109 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 10174 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 10239 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 10306 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 10374 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 10439 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 10504 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 10570 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 10635 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 10702 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 10769 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 10834 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 10899 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 10964 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 11029 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 11095 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 11160 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 11224 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 11289 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 11354 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 11420 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 11486 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 11553 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 11618 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 11684 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 11750 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 11816 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 11881 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 11946 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 12013 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 12079 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 12144 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 12211 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 12277 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 12343 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 12410 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 12476 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 12541 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 12605 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 12670 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 12735 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 12801 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 12867 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 12932 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 12997 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 13063 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 13129 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 13194 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 13259 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 13326 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 13391 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 13456 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 80 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //