Array 1 127498-126655 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AYYT01000001.1 Ligilactobacillus salivarius DSM 20555 = ATCC 11741 strain DSM 20555 Scaffold1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                         	Insertion/Deletion
==========	======	======	======	====================================	========================================	==================
    127497	    36	 100.0	    36	....................................	CTGCTTAAACGTTTACTTAGCTGGATCGTCTGGTTC    	
    127425	    36	 100.0	    35	....................................	TCAGTTACCTTGACAATGTCGCAACCATCTGATGT     	
    127354	    36	 100.0	    38	....................................	AAAGTTGATTGTAGACCTTGTGCGATAATTTCATCGCT  	
    127280	    36	 100.0	    38	....................................	CATAATCACCGCCTAATTCATATCTTTCTTTTTCTTAG  	
    127206	    36	 100.0	    38	....................................	TCTTTCATCTAGTGATAATTCCATGTAGTCTATCATAA  	
    127132	    36	 100.0	    38	....................................	TCAAGCGCTTCGGACGATGTTATTTTTTTGAGTTGTCT  	
    127058	    36	 100.0	    37	....................................	TTGCAATTCTTCCAACGAACCAGCAAAGTGCATAACG   	
    126985	    36	 100.0	    38	....................................	AATAGTTAATGTTTTCATTGCAACACTCCTTTATTCCT  	
    126911	    36	  94.4	    40	G....................A..............	TCTTCGTGTCGTGTGATTGCATTGTATTTATAACCATCAG	
    126835	    36	  97.2	    36	.....................A..............	TGATTAGCACCCTCCATACTGTCTATGTTGTCATAT    	G [126833]
    126762	    36	  94.4	    35	.G...................A..............	TTTTTTGTTATGCAAATATTTCTTCTTTTTGTGTT     	
    126691	    36	  86.1	     0	.G...................A...........TCT	|                                       	T [126658]
==========	======	======	======	====================================	========================================	==================
        12	    36	  97.7	    37	AATAAGAACATATCTCCGAATGAAGGAGACGAAAAC	                                        	       

# Left flank :   CTACAGGACTGAAATTGCCAACTTTCATTGAGGAAGGAAGATAAGAATGATGCTATTAATATGTTTTGATTTACCAAGAAATACAAAAGAAAATAGAAGGGCTGCGGCAAAGTATCATAAAAAATTAATAGAATTGGGCTTTACAATGAAACAACTTAGTATGTATGAAAGAGAAGTGAGACAAAAATCTACTAGAGATAGAGTAATTAAAGTATTAAAAGACGAATTACCTAAGGCAGGATCAATTACTTTATACTTACTTCCTAATGAGGTAAATGATTCACAAATAACAATTTTGGGAAGAGAATCTATTAAAAAAACTGTTAGAAAACCTCAATTTATTGTAGTATAATATAACTACACTAATTGCTAGATAATAAGATTAAAAGTTTGTCTAAAATTTAACCAAACAATGCTTATTAATGTGACCTATTGCCCATTTAGGGTACCATTAAAAATGTTAGTTATTGTTGATATATCAATTAACTAATTAAAGAATG
# Right flank :  AATTTAATTAAAGTAGACAAGAGAAAGCGAAAATTAGAAAAAATAATATATAATATAGATAACTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCGTGTATTGGTGATACAGATCCTATAAGAAATAGACACGATGGAGCTTTATTACATTTAGTAAGGGTATTTCGTCCCCAAAAAATATTATTAATATATTCTGAGCGTGCTTTATCAAAAGAGACTAATATTTTGTTAGCATTGAATTCTATAGATGGATATAATCCTATGATCGAAAAAAGTGATGAAGTCATTTCTGATAGTGAAGTATTTATTTTTGATAAAATGTATGAAGTACTAAATGGAATAATTTCAAAATATTCTAAAGAAGATGAAGATCTAATTTTGAATTTGTCTAGCGGTACGCCACAAATGAAGTCAGCGCTATTTACTATTAATAGATTGAAAGATATCAATGTTAAGGCTTACCAAGTCGTAACTCCTAGTCATTCTTCAAATGA

# Questionable array : NO	 Score: 3.15
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AATAAGAACATATCTCCGAATGAAGGAGACGAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.30,-6.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [12-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.41   Confidence: LOW] 

# Array family : NA
//