Array 1 971-250 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000101.1 Chromatium okenii strain DSM 169 scaffold0101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 970 36 100.0 32 .................................... GGCTAAGAGTGATCACAGTGGAACCATTTAAT 902 36 100.0 32 .................................... TTTTAATAATCCTAAGTTCAGCCATATCTTAT 834 36 100.0 32 .................................... TCCCCAAAAGGAAGCATTGAATAGCACAATAG 766 36 100.0 33 .................................... ACCACGATAAAACGAGGCATCGCTTTTATTAAC 697 36 100.0 33 .................................... GGCGAGTAGTCATAATATTTCTCATATTAATAG 628 36 100.0 33 .................................... GGCGAGTAGTCATAATATTTCTCATATTAATAG 559 36 100.0 31 .................................... GCTTAAAGTTGTTGCGACGGGCGATAAAATC 492 36 100.0 33 .................................... TAAACGTGGGATTGAGAATGGCATACTAAGCTT 423 36 100.0 33 .................................... AATAGGGCGGTAGGGAGAACCTTAGACTCCTAA 354 36 100.0 33 .................................... TTGAAACCGGCGTGAATTAACACGCCGGTTTTT 285 36 88.9 0 ...........A.TT..........T.......... | ========== ====== ====== ====== ==================================== ================================= ================== 11 36 99.0 33 GTTTGAACTGAGACCCGCTTTTAAGGGGATTAAGAC # Left flank : TTTTGGTGGAACAGAGGTTAAATCAATGCGTTTGATGCCCAATCTACGACTCGCATCACCCATCATAACCACACTGTGGATGTGGAAAAG # Right flank : CGCGGGAGGTCTAACAGTATTGCAAGAAAGTGTTTGAATTCTGGATCGACTATAATGACGTTTCTTGAGTGGAATAATGGGCATATTCCAACCGTTATCTGGCAATGAAATGACATCTCACTGCCGTTGGTTCAGACACAAAAACCCCCGGATGACCGGGGTTATGGAGCAGGTTTGTTTAATGTTCACCACCGAAATGTGATTTCTAAATATGCTTTGATTGTCTTCAGTTCTTCAAAGGTTCCAATAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAACTGAGACCCGCTTTTAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 17-712 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000118.1 Chromatium okenii strain DSM 169 scaffold0118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 100.0 35 ..................................... CGGGCGCTAATATCCTACGCGACTATAGAAAGCTG 89 37 100.0 37 ..................................... CACGCGGGGCTTCGGCCATCTTCAAAGCCGTGCATTC 163 37 100.0 36 ..................................... CATGCCGCGATCAAAACCTATGCCGCCGAGAACCGC 236 37 100.0 37 ..................................... AATGCGAATAGGTCAAAGCAAGTTTAAGAATCACCAG 310 37 100.0 36 ..................................... CTGCTGGTTCGGTTAGCTTCCTGCCTCTCTTTTTAG 383 37 100.0 35 ..................................... TAAATCAATAAGTTATACCGCTCTGTAGTATCCGC 455 37 100.0 38 ..................................... GAGGCGCAACAAGCGACGGTGCGGGCATTCTGCGAACG 530 37 100.0 37 ..................................... GAGCGTATCAATAACGCATTAAAACGGCTTGACGCTG 604 37 100.0 35 ..................................... CGGGCGCTAATATCCTACGCGACTATAGAAAGCTG 676 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 100.0 36 GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Left flank : AAACGGCTTGACGCTGG # Right flank : CA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [11.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 645-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000121.1 Chromatium okenii strain DSM 169 scaffold0121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 644 37 100.0 38 ..................................... TCAGAATGAAAGAAGACCATACAGTAGAATACAAACAA 569 37 100.0 38 ..................................... CTATTGAAAAAGAAGACGGTGCGATTGTGACGTTGCGC 494 37 100.0 37 ..................................... TATCATTGAACGCGACCGTATTTATAAGACTAGCGCA 420 37 100.0 37 ..................................... TATCATTGAACGCGACCGTATTTATAAGACTAGCGCA 346 37 100.0 36 ..................................... TGACATCTTCAAAACGCAAGTATGGCGGCGTTGCCC 273 37 100.0 37 ..................................... CAGAATACCGCACAGCAAGTCAACACTTCCGCAGCGC 199 37 100.0 36 ..................................... AAACTAACACTCAGTGGCGTGTTGGCTTTAACCCAC 126 37 100.0 36 ..................................... TTGATGGACGGATCGCTACCGAGCGCGGCAATGATG 53 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 100.0 37 GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Left flank : CAGCATACATATT # Right flank : CATCCCGCACCTGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 533-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000125.1 Chromatium okenii strain DSM 169 scaffold0125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 532 36 100.0 32 .................................... CAATCCAACTTCGACGGCTTTTAAGGCAGTCG 464 36 100.0 34 .................................... GGTGGATTTACGCGACATGGGGCGTCGCATAAAG 394 36 100.0 31 .................................... CGAATGTTACGCGCCGAGCGTATCCCTTGAT 327 36 100.0 31 .................................... AAAGCTAACATCCCTGTAGCCAGAATTGCCG 260 36 100.0 32 .................................... CTTTTCTAAAGTCTCCCGTGCAAAGGTAGACT 192 36 100.0 32 .................................... CGCCTCTTCCTCTTCTACTACAGAGGAGATAA 124 36 100.0 33 .................................... TTGAAACCGGCGTGAATTAACACGCCGGTTTTT 55 36 88.9 0 ...........A.TT..........T.......... | ========== ====== ====== ====== ==================================== ================================== ================== 8 36 98.6 32 GTTTGAACTGAGACCCGCTTTTAAGGGGATTAAGAC # Left flank : TTTTGGTGGAACAGAGGTTAAATCAATGCGTTTGATGCCCAATCTACGACTCGCATCACCCATCATAACCACACTGTGGATGTGGAAAAG # Right flank : CGCGGGAGGTCTAACAGTAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAACTGAGACCCGCTTTTAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 115264-114136 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000017.1 Chromatium okenii strain DSM 169 scaffold0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 115263 36 97.2 31 T................................... CCCTTACGGGCAACCCATGCATCCATCAAAG 115196 36 100.0 32 .................................... CTCCAGCTCTACAGCGATAAACTTCGGCATTG 115128 36 100.0 33 .................................... TCTGGGTGGCTTAACGTAACCGAATGGCTTCGG 115059 36 100.0 32 .................................... GATACTCTCCTTAAGAGTAAGTGAAGAAAGGT 114991 36 100.0 32 .................................... ACACCCTGGTCACCCAGGGCCACGAACGTGGT 114923 36 100.0 31 .................................... TCCTTCTAGGAGGTTATTATGGTAAATAAGT 114856 36 100.0 32 .................................... TGCGATTTCTCGCTCAAAGTCCACCCGAGTTT 114788 36 100.0 32 .................................... AGAGGGAGTACCTTGCAGCCAACAAGGGAAAC 114720 36 100.0 31 .................................... CTCCCACAACGCCTTCTTTGACGCCCACCAC 114653 36 100.0 32 .................................... GGTCAAACTCCTAAGAGAACAGATACCCGAAT 114585 36 100.0 32 .................................... GATAGTTACCCGCGCTGGTTCGCCGTACCAGC 114517 36 97.2 34 ............A....................... CTTGGAGACGGGCTTCGAGCAGGGGATCATCTCC 114447 36 100.0 33 .................................... ACCAGAGTGGCGACCGGCGAAAAAAGATGTCAA 114378 36 97.2 31 .................A.................. CTCCCACAACGCCTTCTTTGACGCCCACCAC 114311 36 100.0 32 .................................... TACATCAACCCAGTGCCACGGACCTAAACCGT 114243 36 100.0 34 .................................... TAATAAGGGTCGCTCAAAAGCGACCCTTTTTTTC 114173 36 80.6 0 .........A....AAA............C....GT | GT [114144] ========== ====== ====== ====== ==================================== ================================== ================== 17 36 98.4 32 ATTTAGCCGGTTGAGCCGAATTAGAGGCGATGAAAC # Left flank : ATGTATAACCATCAGATACCCCAAAAAGCACTCGGACATGTGTCACCGGTGCAAGCGTTGAAAAACTGGCAGCAGAAAGAACCCGAACGCTTCAAAAAACAGGTCTACAATCTCTCGGGTCTTGAC # Right flank : AAAATCACATGGCACCGCGCATTTTCTTGTTCCGTACAAATTTATAGTTCCCATCTTTGTTAAAGCTATTTTTGCTCAACTGCGTAACACCGAGATAAAATTAGCATGAAAACCCCAATAAATGCGATTGAAACAATCGCTAACTTCTGTAAGGGATAATTATTTAGTTGAGATTTTGTTTGTTTGTCATTTATAATCATTTCTATGTTGAAATAACTATATTAGGAATCACGCCATGACCCACAAAACGTTTCAAGCCCTTGCCGCGCAAGGTTACAATCGCATTCCCGTTGCTTGCGAAGTGCTTGCTGATCTCGATACGCCATTGAGTGTTTATCTCAAACTCGCTGCCGCACCGTATTCGTATTTATTTGAATCAGTGCAGGGTGGTGAAAAATGGGGGCGTTATTCAATCATTGGTTTGCCGTGCCGGACGTTAATTCGGATTCATGGCACCACCATTCACATTGAACGCGACGGGCAAGTCATTGAAACCATTA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAGCCGGTTGAGCCGAATTAGAGGCGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 62079-56868 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000016.1 Chromatium okenii strain DSM 169 scaffold0016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 62078 37 100.0 37 ..................................... CGCAGAAACAGCGCGCAGTGACGCCGGGACAGTCAGT 62004 37 100.0 37 ..................................... GACGGTACGGGTAAGGGCGGCAATCCCTTACTATTTT 61930 37 100.0 37 ..................................... CTCTTCAATTCGTTCCGGCAGCGTTAAAATCAGGTGC 61856 37 100.0 36 ..................................... TCGACCTTGACCACAGGTTCCTTGTCCTTCACCGCA 61783 37 100.0 37 ..................................... CAAACATCAATAAATGGGTGTGGATAATTTCGCGGTT 61709 37 100.0 37 ..................................... ATCCGACGACCTTTTCAACTGATTCAACACGGGCGAC 61635 37 100.0 39 ..................................... ATTGAGTAGTAAATGGAGTGCGTTTTACTACGGTGTTGT 61559 37 100.0 37 ..................................... TTGACGATGGCGGCGATTGCGCGTCGCGCCCAAGGGT 61485 37 100.0 36 ..................................... TTATGCACCCGTGACCAGATTTCCGCCAGCGCCTTG 61412 37 100.0 35 ..................................... GAGATAAACGGCTTTTTTGCTACCTAGTTTTTAAG 61340 37 100.0 36 ..................................... GCTTGATGCTTTGGCAACGGGGATTCCGAAGCGATG 61267 37 100.0 37 ..................................... TTCATGGTTCTCTCCAGTTGGTTAGGTTCAATCGTTT 61193 37 100.0 36 ..................................... ATAACAGTCGCCTGTTATCACTGCTAACGTCTATGC 61120 37 100.0 38 ..................................... TTATCAAACATGCTGAATACTCCCTCTGGAGTTCTCAA 61045 37 100.0 37 ..................................... TTCTACAAGAACGTTGAACTTTTTCATGCGAAACTCC 60971 37 100.0 37 ..................................... AATAGGTCAAACAGCGCATTCCCAATGCCGGGGTATA 60897 37 100.0 37 ..................................... ACGCCGAGCGCACGGCTGCGGCTGGCGCAAGCGAGGC 60823 37 100.0 35 ..................................... TTGAGAAGATGCTCAAAACGATGCAGCACCTTTTC 60751 37 100.0 38 ..................................... GACGTCACGCGCCACCGACCTTCTTTCTCTTTAGCAGA 60676 37 100.0 34 ..................................... GCAGTCTGCGCCGTGTGGCGATCAAGTGCGGCAG 60605 37 100.0 38 ..................................... TCTAATTAGCGCGGATGTCCAAGTGAGACTAGCGCGGT 60530 37 100.0 36 ..................................... GAACGTATCAATAACGCATTAAAGCGGCTTGACGCC 60457 37 100.0 37 ..................................... CCCATCAAGGTGAAATGCCCAATGGGCAATACGATAG 60383 37 100.0 37 ..................................... CAGCAACGCGGCAGCGTCCATCGCAAGTAAGCGTATC 60309 37 100.0 36 ..................................... TTTTCAATCTGTGCGGCAGGCAATTTCAATCTCCGT 60236 37 100.0 36 ..................................... TTTCGTTACTTTTTCTGTTTGAGCATTGACATGATT 60163 37 100.0 37 ..................................... GCAATATGAACCAGACGGAAAAGATATTGGGCTGCGG 60089 37 100.0 35 ..................................... CTGCGCTAATCCGGGGCGGGGCGCACTATCAAAAA 60017 37 100.0 38 ..................................... CATTTTAGAGCATCGCGGATGGACGTGTTCCATCGGCG 59942 37 100.0 36 ..................................... GGGGCGCGAGGATGGACTGTTGAATACAGCGCCGAG 59869 37 100.0 36 ..................................... GTTATCTTTCGAGATGACGTGCGCAAGGCGTATCAA 59796 37 100.0 37 ..................................... ATAGACGGTTTTATCGGTATCGCACCACCACCACAGA 59722 37 100.0 37 ..................................... AATTCACGACGGAAACACATTGAACCATTTCACAGCC 59648 37 100.0 37 ..................................... CTGAAGGCTTGGTTACATGCGGCGAAAGAAACCGCAC 59574 37 100.0 44 ..................................... GCGTTGCCGTGCATTCAGCATTGAACGCTCCACCGGAGCCGAAT 59493 37 100.0 37 ..................................... GTCAAGCGACTAACTTATCCCGTCATCGCAATGACAC 59419 37 100.0 37 ..................................... CGGTCATGTGATGCGCTCCGGTTAGGGTGGCTTGCTG 59345 37 100.0 37 ..................................... GAAATCATCAGTCTCCCATGTTGTCATAATAACACGC 59271 37 100.0 36 ..................................... AATAACTCCATCCTAGTGTCGCCAACAAACACTGGT 59198 37 100.0 36 ..................................... ATGACGGTCTCAACACGCGCCACGATGCCGCTCGGT 59125 37 100.0 37 ..................................... TTCGTTCCTCTAATTCCTGCCAACGCACCATCACCTT 59051 37 100.0 36 ..................................... AGACTCCTAATAACCGGGAGTTTCGAGCTCGTGGTG 58978 37 100.0 37 ..................................... GATACCAGTCGGCAGCGGCTACCGTCTGCGCATCCGA 58904 37 100.0 37 ..................................... CTACCCGGCACGCGTCACTTGCGCTGAATTTACGCGG 58830 37 100.0 38 ..................................... ACCCTGACAAGAAAGCGTCAACCGTCGCCTCAACTAAA 58755 37 100.0 38 ..................................... TCAAAATCCCAGACGGCAACACCTTGTTTTGCCCGTGC 58680 37 100.0 36 ..................................... AGCAGGCGCGGGGAGTTCACAACGCAAACTTTCACC 58607 37 100.0 39 ..................................... TAAACGTCTCCTGCGGTACATACCCAAGCTTCAACGCCT 58531 37 100.0 36 ..................................... GCAATAGCGCCAGCGATGTCATCTTTCAATCAGGTG 58458 37 100.0 36 ..................................... CCTAACTGCCGACTTTCAGGTGTTTTGGAACATCTT 58385 37 100.0 37 ..................................... ATGCAATGGCGGAGATTTAGCATGGACAATGATTTAG 58311 37 100.0 38 ..................................... AGCAGTGCCCGATTAAATCCTGCGCCCGCCGTTTCCGT 58236 37 100.0 38 ..................................... AGCAGTGCCCGATTAAATCCTGCGCCCGCCGTTTCCGT 58161 37 100.0 37 ..................................... CAGCGGTGCGCACTAGCGTACATTTCACGAAGTGCTA 58087 37 100.0 36 ..................................... CCGGATGCGAGTTCACCGGGCGCGTACCTGCCGCGA 58014 37 100.0 38 ..................................... TCCCAGCATAACCATTGCCCGCCCGGCGGTAAATGTTG 57939 37 100.0 37 ..................................... CAACTAGAAATAGGCTTAGGCGGACGGAAAACGCGGA 57865 37 100.0 37 ..................................... TACAGTGCGGCGGTCTTCTTGGTGTCGATTGGCTGCC 57791 37 100.0 37 ..................................... AGCGTGTAACTGGCTGTCTCGCAAACAAAAAAGCGCG 57717 37 100.0 38 ..................................... CCTTCTTCAGTGATCGCATCCATAAGTTCGGCTTTCAA 57642 37 100.0 36 ..................................... ATAGCCGGTTGCCTCATCAATCAAGGCAACGATGCC 57569 37 100.0 37 ..................................... GACCAAGATGATTTTCTGGAACAACAAGGATATACAG 57495 37 100.0 36 ..................................... ATGCCGCATAAATCGCGGCGGTCTTCTTCACGTCAA 57422 37 100.0 37 ..................................... AATGATGTGCAAAGTCTTATCAGTTTGGCATTTAGCG 57348 37 100.0 36 ..................................... ACAAACAGTGATCCAGACGACGATACGGACACATGT 57275 37 100.0 38 ..................................... GCGACAAGCGAAACTGGGTGAGAAACCGCGCTTCAGTT 57200 37 97.3 35 ...................C................. TACGCCTTCTGCCATGCGTCGGCTTCATAGCCCCT 57128 37 100.0 37 ..................................... CGGTCATCATTTCAGGGCGGATACCAGTGGCATCTCG 57054 37 100.0 38 ..................................... TGATTCTGAAATTATCTGGCTTAATCGCCGGACACCAC 56979 37 100.0 38 ..................................... ACGCCGCGCAGCGTTCCATTGCCGCCGTGCTGGGCACA 56904 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 71 37 100.0 37 GTTGCAACGCTAAATCCATTACAACAAGGATTGAAAC # Left flank : GAGGGAGCGTGGTATGTGGCGGCGAAGGATGCGGCGCGTAACGCTTTGATTTTAGTACAAAATCACGATCATCCGCTGTTGATGACGAGTGCGCTCGTGATCGAGCCGGTGCATTGGATCGGGGGTGCTCCACCGGCACTTCCGTTTTCGTGCGCGGCGCGACTGCGGCATCGACAGCCACTGCAGAACTGCGTGGTCGAGGCCGCGGAAGGTGGATTTCGAGTGCAATTTTCGTGCCCGCAGCGTGCAGTGACGCCGGGGCAATCAGTGGTGTTCTATTTTCGAGACGAATGTTTGGGTGGCGGTGTGATTGAAAAAATCGTAAATTGAATCACGAAAAATAAAGGAAATAAAGGAAATAATTTTTTAATTTTGAGCTTGACTTGAGAACAATTTTCGATTTATCCTTAATTCATA # Right flank : ATAAAATGAATAGCGCGGCAATTATTAAACGCCTTTATTCTGAGGGTTGGATAATGGTGGGTGGAAAGGGCGATCATCAAAAATTCAAACATCCTCAAAATAACGGGCACGTTGTAGTGCCGCATCCTCGAAAAGACATTGCGATTGGTACGTTGCGCAATATCTATCGGCAAGCAGGATGGGAATGGAGTTAAAACATGTTATATCCTGTTTATATTCATCTTGGTGATGCACATCATGCGCATGGTGTAACGATGCCTGATTTTCCGGGCTGCTTTTCGGCAGCAGATGATTGGGTTATGCTTCCTGCTGCAATTCAGGAAGCAATTGACGTTTATTTTGAAGGTGAGGATATGGAAATACCACTGCCAACGCCGTTAGAAGTATTAGCAGTGAATCCTGACTATCAAGACGGGGCATGGTTACTTGTGGATGTTGATGTATCACGATTTCACAGCGAGTCTAAAACAGTGGAACCAAGCGAAGTGAGGCTGGCGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACGCTAAATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 4040-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000044.1 Chromatium okenii strain DSM 169 scaffold0044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================= ================== 4039 37 89.2 209 ..G........G.........T..........C.... AAACAGATTTGCTGGCGAAAAATTATCAGCGCAGTTGGCAACGAAGCTCATAAGTCGTTGATTTTATGAATTAAAAATCCAGAAAAATGATGTAGAACATGGCTAAAATTTGCGTTTTTGGCGGCAAAATGCGGGAGAAACTGACAAAAAAGAGAGTAGAAAAATTTCGTCAACTTGATGATTTTGAAGGCTTTTAGGTAAAAATGCAG C [4022] 3792 37 100.0 37 ..................................... CTTATAAAAAACCGGAGATGCCTTCGGGATTAACGGG 3718 37 100.0 37 ..................................... CATCAATAGTCAACGACATCATCGGGCGGCTCCTCAG 3644 37 100.0 36 ..................................... CACTGACGTTTGATCGCGTAACGATTTCCAGACCCG 3571 37 100.0 35 ..................................... ATTCATCGGCGATGGACGCCAATTCAATACGCCGG 3499 37 100.0 37 ..................................... ATCATCTTAGTGGCGCTCCAGCACTATTGAATTAAAG 3425 37 100.0 36 ..................................... CCGAAGTGCTCAATGCCATTCCGAACAAAAGCAACG 3352 37 100.0 36 ..................................... GTAAACCGCGCAATAGCGCAGCTAACCATGCTCTTG 3279 37 100.0 38 ..................................... ACCGCTTTCACAAGCGCCAGTCGCGCCAGTTGGCGCGG 3204 37 100.0 38 ..................................... TCATTGAATGCGGCAGCCACCGCCTCTTGTCCGTTCGC 3129 37 100.0 35 ..................................... GTAAATGCCCGTGCTAAATCCCAGTCTTCACTAGT 3057 37 100.0 35 ..................................... ATCAACCGTCGGCGCATTATCTGATAGTTCTCGGC 2985 37 100.0 36 ..................................... GCTAATGCTGTATGGCACTCCGGCGCTGCCGCCATT 2912 37 100.0 36 ..................................... CAGCCAGCGCGTTTACTGCGCCAGCATCAACATCTG 2839 37 100.0 37 ..................................... CAGTTGACGCCGAGCGCATCAAAACATTGCGCTTGAA 2765 37 100.0 37 ..................................... GGAAAAAAAGGCACTGCCGCGTCGGCGGCCTTCTCGC 2691 37 100.0 37 ..................................... CAACGGCGCTGCGTAAACCACGACCGGAAGTGACGGT 2617 37 100.0 37 ..................................... CTGATTTTGCACTTGCAACGCTTGTCCGCCACAAATA 2543 37 100.0 36 ..................................... AGTGTCCTGATTTTAGCATAAACCTGACAAAATCAA 2470 37 100.0 38 ..................................... TTCAAAGCAGCGCGTACCACCGCTGAAACAATAAAAAA 2395 37 100.0 38 ..................................... TATCGCATTCTACGGGCATATCTATAGGCGGGTAACAG 2320 37 100.0 36 ..................................... TAAGATTTGCGCGGATGAAAAAATCCGCGCAATTGT 2247 37 100.0 36 ..................................... TAAGATTTGCGCGGATGAAAAAATCCGCGCAATTGT 2174 37 100.0 37 ..................................... TAGACAATGAAACAACGCAAAATCCCGTTATTGCAGA 2100 37 100.0 38 ..................................... TCTGTGTCAGATGACGGCGTGACCGGCACCGTGACGGC 2025 37 100.0 36 ..................................... TTGATGGACGGATCGCTACCGAGCGCGGCAATGATG 1952 37 100.0 37 ..................................... ATCCCGCACCTGATGCGCTTTGGTACTTTCAGACGTT 1878 37 100.0 37 ..................................... GTAATTGCTCGCACACAGAATCCACACGTTGTTAGGG 1804 37 100.0 37 ..................................... GTGGTGCGAGAAAGAAAAGCACTTCAACCCATTAACC 1730 37 100.0 37 ..................................... CATTGAAATTAGAACGTCGCGCCCGTGCTAATGCTGT 1656 37 100.0 37 ..................................... TTAGTCATTGTCTTGATCCTATGGTTACGAAAAGGGC 1582 37 100.0 36 ..................................... CGCGTGTAAATCCGCCGATAGCGGGCACAGCAGCTT 1509 37 100.0 37 ..................................... ATAGCGCGACGCGCCGTTAAGCAGTGTTTCATTCATC 1435 37 100.0 36 ..................................... CACGCTGCAATCAAAACCTATGCCGCTGAAAACCGC 1362 37 100.0 36 ..................................... CATCCGATTCAACCACCACCGGTGGTGCGGATTTGC 1289 37 100.0 36 ..................................... AATTGTCGTAAACCTTACAACGTGCTACAATGCGGC 1216 37 100.0 36 ..................................... AAATGTGACCATACACTGAAAATTCACTGATAAGAG 1143 37 100.0 37 ..................................... AGCGACCTTTATTAAAATCAACGGGTTACAAGCGAAA 1069 37 100.0 36 ..................................... ACTGATAACAAACGAGATGCGAGGCGAGACAATGAA 996 37 100.0 38 ..................................... GAGATGAAGCGGAGGCGTTATGAGTGACGTGCGCACGA 921 37 100.0 38 ..................................... GCGACTTGGGGCGCATAGCCAATGATGCTGGTGACTTG 846 37 100.0 37 ..................................... ATAACGCAATCCTAACCTTGCGCGATTTACAAGACGT 772 37 100.0 37 ..................................... CAGCCCAAATCGCACGCGCAACGCGATCCGCGTTAAT 698 37 100.0 37 ..................................... CAGACGAATAGGCAAGGCGTGGGCACTCGGCGATACC 624 37 100.0 36 ..................................... TCGGCAGTGAAGAAGGGAACTGTCCCCTGCGAGACC 551 37 100.0 36 ..................................... ACAAGTTCGGGATCACTGGACGGAACTGGCAACGGC 478 37 100.0 37 ..................................... CTGACAAAGCATATGATGACGCTGCTGCAATAAGCGA 404 37 100.0 37 ..................................... AATCCGCGCAGGTGACGCGATACGAAGCGCGGCAAGC 330 37 100.0 33 ..................................... CAAAACTAGCGCGTCATTATCCCATGTAAAAGA 260 37 100.0 38 ..................................... ACACTTGCGAGTGTCAATTATTTTAGACAATAAAAAGG 185 37 100.0 35 ..................................... TGTATTGTGCGGGTGATATGTCAGCATACATATTT 113 37 100.0 38 ..................................... TCAGAATGAAAGAAGACCATACAGTAGAATACAAACAA 38 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================= ================== 53 37 99.8 40 GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Left flank : ATCAACGGCGGGCAACTGAAAATCGTGACTATTTACGACGTAAAATTGGGGCGACAAAACGTGAGATTGAAGTGTATTTGGCGTCGCCAAAGTTGCGCTTGAGAGGTATTGTAGACGAGGTGCTATGGCTAAAAGATGGAACAATGGCGGCTTTAGATTATAAATTTACTGAGTCGCGTCAATCTGCTTTTAAGACGCATGAAACTCAGATTATTCTTTATTCTATGTTAATTCAAGAAATTTATGGGCAACCTGTTGAACGTGGTTTTGTTGCTTATGTGCGAGATGGTAGTCAGTTGTTGGAGGTGGCAGTGAATAACAGTGCGATTTCAAAAGCAAAGAAGTTGGTTGAAGATATTTTTGTTGTGTTGCAAACTGAGCGATTACCAGCGCGAACTTCTTCAAAATTACGTTGCGGTGATTGTTGTTACCGGAATATCTGTGTGTAGGCTGTAACATGATATTGCTATTCTTGGTAAGTGGGGCTAAACTGTTTTCCG # Right flank : CC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 1 11214-9839 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000043.1 Chromatium okenii strain DSM 169 scaffold0043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 11213 29 100.0 32 ............................. ACGAGACTGCACTGAGTGCCGCGCTCAAGGCG 11152 29 100.0 32 ............................. GCTCGCCGAGAATAGAGCAGCCCAGAAAGTGG 11091 29 100.0 32 ............................. GGCGTAACGTTATAAAGTTGTGACGGCGTAAC 11030 29 100.0 32 ............................. TGCGTTATTACCATCAAACCCGCCAACTTCTC 10969 29 100.0 32 ............................. AAAGCGTCCATATCCCGATTCAACAGCGCATC 10908 29 100.0 32 ............................. CAATGGGAATACCGCACCGCGACCGGCGATCT 10847 29 100.0 32 ............................. GTGGTGCGTGATTTGAATGAAACTCCGAAGCC 10786 29 100.0 32 ............................. TTATTAGCCGCGTCAGATCACGGCATTACTTT 10725 29 100.0 32 ............................. TTTATCACCAGATTCTGAGCATTTATTTCTAC 10664 29 96.6 32 T............................ TTCGCATGAGTGCGTCCGTAGTGATTCCGGTA 10603 29 100.0 32 ............................. TGCCAGACGTTGAGCCAGACGTGGTGCCAGAC 10542 29 100.0 32 ............................. CAGCTTTCATCTGCTGCCGGTTCAGTGACCTC 10481 29 100.0 32 ............................. AACAGCATGAGCTGGTGGCGATGGAGTCTAGC 10420 29 100.0 32 ............................. TGGTATGCGCAAAGAATGCGCGTGTAAGTATC 10359 29 100.0 32 ............................. GATCAAGTCGTGATGGCGGACAAGACCTACAC 10298 29 100.0 32 ............................. GATCATCTAAAACATCTATAGCCATGAAGACT 10237 29 100.0 32 ............................. TTCTTCAAACGAGCGTGCCCGCCCTTGTTCCT 10176 29 100.0 32 ............................. TCTAATCCACAGCCGTGCTTGAGTGCTTCAAT 10115 29 100.0 32 ............................. CATTGCCCGCCCGGTGGTAAATGCTGACTGTA 10054 29 93.1 33 A............T............... ATTGATCGCGCATTGGGGGTTGAACACCTTATC 9992 29 100.0 32 ............................. TTCACATCATCTAGTTACCACTAAACTTCACT 9931 29 100.0 35 ............................. TGCTGAACACGTCAATCTTAACGATCTTGCTACGG 9867 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= =================================== ================== 23 29 99.4 32 GGGGCTATCCCCGCGAGTGCGGGGGAAAC # Left flank : TGCTGCCATGATTTGATCTGCCATTGCTTTGCTCTGCTGTCCATTCACCGTCACCACTGCCTCACCGGGATAACAGCGTTCGCTCTGACTGGTGAGCGGAATCACCACGACCCGTGCCAGATGACGATTGGCGGCGTTATTACTGATGATGACAGCGGGGCGGGTTTTACGAATCTCACTGCCGACTGACGGATCGAACTCAACCCACCAGACTTCACCGCGTTTCATTCGCCATATCCTTTGCCAAAGCGTTACACCATTCCAGTGCTTCAGCTTCGCGCTCACTGTCAGCCGCCATATCCCGATACCCATCATCCAGATTGGAATCCAGAACATGCGGGCGGACTAAATCCTCAATGAACTGGCTGATCCGCCGTTTGCCGACTGTCCGATACAACCCTTCATAGACGGCTTCATCAAGCGTGATGGTCATCCGACGATGCACAGATTACTCCTAAAGCGTTATGCGTATAACGTACTGTAGTGCATTTTTAACCGGC # Right flank : TAACTCTTAGATTTTCAAAGAACTGAACTATCTGGTCTCACTAACAACATCCCAAATCCAAAGGCGCGATGTCGACCGATTCCGCGCTTCAGCAGTCGGCAAAAAGCATCGCTGTCGCCGATCTTTAAGTGCCCTTTAAGAATGACATCTGGTCCCATAACAGTACGCGCTTTGCGTAGACCAGTATCGTCAGACTGAGCGCGGCGGATCACTCGACTTAGACGGAAAGCATCCATACCAGCTTCCAGTATCTCTGCTGATCCTTCAGCGACTAAGTGGTGGCATAGCCACTCAACGTAGGTGGCGTCGCGGAAATCGGCAACCGCATTTTCTGTCTCATTTTCTGTGGCGCGTTTGGGAGCTGAATCACTTTCGACACGATGCAGAAATACATCACGTTCCCGCCCGTCCTTAGTCCGCACTATTGGACGCACCCGAACCTCGAAAGCCAAGGTCTGACCACGCCGCCAAGTGGTGGGAAATGCTTTGAACAATAAACC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGGCTATCCCCGCGAGTGCGGGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 116-4773 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000056.1 Chromatium okenii strain DSM 169 scaffold0056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 116 37 83.8 36 CGGA....TA........................... ATAGCGTCATCAATCGGATTATCAGAATTATCAATT 189 37 100.0 37 ..................................... TCAGGTTTACGACAATTTAGCGCGGACGCGGAAAACC 263 37 100.0 37 ..................................... CATGCCGATTTTTCGCGTGTAACTGGTGTAACTTCTA 337 37 100.0 36 ..................................... CCACGGAATTCCGTGGTAACGGGCGCAGGTGTTGGT 410 37 100.0 37 ..................................... AGAATTGGCAAGGGCTAGGTCTAGTTGAGGCTACTGT 484 37 100.0 36 ..................................... TGATACCTCCTGCACTCGTTGCGGGATTGCTACAGA 557 37 100.0 34 ..................................... TCTGGCCAGACCTTGACGGCGCGACCGTTGACTG 628 37 100.0 41 ..................................... GTCGATACAGCGGGCGCAAGCCGTCCGGCAGTTGGAACCGC 706 37 100.0 36 ..................................... AACAGCTATGCGATGAATCTGTTTTATATTCTTGAA 779 37 100.0 36 ..................................... GTTATTAAGACTATCTGTAATTTCATCCGCACCGTC 852 37 100.0 36 ..................................... GTTATTAAGACTATCTGTAATTTCATCCGCACCGTC 925 37 100.0 36 ..................................... TTATATCGCCCTGTAGCATCATCTAACTCACTGTTA 998 37 100.0 36 ..................................... CATCCACGAGATTTTTCGTCTGGCGCTCCAACAGAA 1071 37 100.0 38 ..................................... ATAGTGGAAACGATGTCGCGGCAGCCGTCTTGCGTGGC 1146 37 100.0 35 ..................................... CTGACTACATATTGCCCCGACTTCACGTTACCGCC 1218 37 100.0 37 ..................................... TCACCTGTCAGCTCAAAATCACCCGTACACGAGACTT 1292 37 100.0 36 ..................................... CACTTCGTTATCCAGCGTACCGTTATTTAACACTGC 1365 37 100.0 36 ..................................... AACGACAAGGGATAACTATACGCAAACCCATATCGT 1438 37 100.0 37 ..................................... CAGACGATACGGCGAGTAGCACAGTCTCACAATCGTT 1512 37 100.0 37 ..................................... CTTGCGCATTGTGCCATTGCGATTGAGGATTGCCGAT 1586 37 100.0 36 ..................................... ATGTATACGGTTTACTGGTACCGATTAACCTTTAAT 1659 37 97.3 35 ..........C.......................... TAAATACAGGGTACAGTTGAGATTTTAGTACCCTG 1731 37 100.0 37 ..................................... TAGCATCAATCGACACTACAATCTCTAATCTTTCACC 1805 37 100.0 37 ..................................... CAAGGTTAATTATGGCACTGGCAATCGTAACAGGTCG 1879 37 100.0 36 ..................................... ACGTTGTCCGGCAGTGCCATAATCCGTTTAGCCAGC 1952 37 100.0 37 ..................................... AAAAAGAACCGACTAATCAGTTAGTTAGTGACGACTC 2026 37 100.0 36 ..................................... AAAAATCTACCGGCAAATGGAACTATAGTTCCAAAC 2099 37 100.0 36 ..................................... TCGCCGATTTAGATATTAAATTGAACCGTCGCCATT 2172 37 100.0 37 ..................................... TGAAAAAGTCTCATTCTCTATTCTCAACTCAACGCGC 2246 37 100.0 36 ..................................... ATTAACGGCGATGTAATACTCTTGCGCGTATTCTGG 2319 37 100.0 34 ..................................... CCTAAAAACACACTGTCCGCAACACGGGCGCGTG 2390 37 100.0 36 ..................................... CGCGATGTTATTGAGTAAAGTTGACGGCGGTCGCTG 2463 37 100.0 36 ..................................... TGAATGCGAAAGAAGGCTACGCGACTAATGGCAATG 2536 37 100.0 36 ..................................... CTGTAACGCTTCGTGTTCGAGAATGTCGCTTAATTC 2609 37 78.4 26 ...........................CAGC.CC.TT GCTATCTTACGAAGGGATGAACCAGC Deletion [2672] 2672 37 100.0 40 ..................................... ACCAGATAAGTCTGCACTGCTTTCTGTAGGGGAACAAATT 2749 37 100.0 38 ..................................... ATAATCCAATCGTTGCAACATCAATCACTTGAAAACCC 2824 37 100.0 37 ..................................... AAAGATCGCGCATCGATCGCAACACGCGGCTGGCGCT 2898 37 100.0 36 ..................................... ACTTGCGTTACTGAATTCGTTACATTGGTCATTGGA 2971 37 100.0 34 ..................................... CGATCTGGCAGCAAGCATCAAAACTCGAAAAACT 3042 37 100.0 38 ..................................... ACGACTGCCGCAGGTGAATTTTCAATGGCAATGGCAGG 3117 37 100.0 34 ..................................... CAATGACTTACGAAGCTGGTTCTGCACTCGCCAA 3188 37 100.0 37 ..................................... CAGTGTTATCAACGCCTTAGCACCGCTGCGGAATCAT 3262 37 100.0 36 ..................................... GCAGGGGCTGACACGATCTGCTCCAACGCGGATCGC 3335 37 100.0 37 ..................................... CTCGAATCAATGCAGGTTGCCAGCCGTGTTGGGCAAT 3409 37 100.0 38 ..................................... ATAGCGCCAAGATTGATCGGCGCAATATCAAAGCACGG 3484 37 100.0 38 ..................................... TCTGTCACAAGGTCGCCAAACCGCACAGATGAAAACGT 3559 37 100.0 44 ..................................... ATTGCGAAACATATCAAGACGAATACGCAACGGAGTTGCAACGC 3640 37 100.0 36 ..................................... CAGACTCGCACAATCGCTTAAAAGGACGTGCGAAAC 3713 37 100.0 36 ..................................... CGCATCTCATACAGAACGCGAGCGGCGTCAACATGA 3786 37 100.0 37 ..................................... AACACAGCACTGAATGCCGAAAGCGCAGGTTGGCAGT 3860 37 100.0 34 ..................................... ATGCCGGAGTTTGAGCACTATCAAGATGTGCCAT 3931 37 100.0 34 ..................................... ATGCCGGAGTTTGAGCACTATCAAGATGTGCCAT 4002 37 100.0 38 ..................................... CCGACACACTCCTGTAAATCGCTGCGCTTGATAAGCAG 4077 37 100.0 37 ..................................... AACAACTATGCGATGAATCTGTTTTACATTTTAGAGC 4151 37 100.0 36 ..................................... CAGCTTGCGCAATTGCGGCAACGCGCTCGGCGTCCG 4224 37 100.0 35 ..................................... TAAATCGACAAGGTATTCACTTTAACGGTCATGCG 4296 37 100.0 36 ..................................... GCACATTCTAATATAGGTTTTCGAGCGCGGCGTGGT 4369 37 100.0 36 ..................................... AAGTAAGGCGGCACTGTCTCAGGTGTGACTAGCCGC 4442 37 100.0 35 ..................................... CCGTGTACTTCATAACCTCAAGAGCGCCAGCAATT 4514 37 100.0 38 ..................................... ATAGGGCGGACAAGTCTCCGCCTTGCGTTGCCATTAAC 4589 37 100.0 37 ..................................... CAGCATCAATCTGTTTTTTTATCGCAGGCAGTATCTG 4663 37 100.0 37 ..................................... AATGCGAATAGGTCAAAGCAAGTTTAAGAATCACCAG 4737 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 64 37 99.4 36 GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Left flank : ATGAGTACTTAAAGTCAGTCATCTCTGATTCTTGGGCTGTATTCAGCAAATCATCAAGCTATGCCAAGGGCTGGATAGAACAGTTCGTGCCTTGGGTGCTGTATGGTTAGTTTTGC # Right flank : CCTGCTGGTTCGGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACGGCTTGACGCTGGTTGCAACGCTAAATCCAATACAACAAGGATTGAAACCGGGCGCTAATATCCTACGCGACTATAGAAAGCTGGTTGCAACGCTAAATCCAATACAACAAGGATTGAAACCATGCCGCGATCAAAACCTATGCCGCCGAGAACCGCGTTGCAACGCTAAATCCAATACAACAAGGATTGAAACACGCGCACCACAAGGCGCAAGGTGCGCTCGGCGGTGGTTGCAACGCTAAATCCAATACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 2 5031-8500 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000056.1 Chromatium okenii strain DSM 169 scaffold0056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================================== ================== 5031 37 100.0 35 ..................................... CGGGCGCTAATATCCTACGCGACTATAGAAAGCTG 5103 37 100.0 36 ..................................... CATGCCGCGATCAAAACCTATGCCGCCGAGAACCGC 5176 37 100.0 36 ..................................... ACGCGCACCACAAGGCGCAAGGTGCGCTCGGCGGTG 5249 37 100.0 35 ..................................... CAGTCACGCGCATTCACGGACGCGATGGCAAATTC 5321 37 100.0 34 ..................................... CACGAGCGCCAACTAATTCCAATAGGTGAAGTGG 5392 37 100.0 38 ..................................... TAATTCTCCGTCAATCTCTAATCCACTGCAATGCCCGC 5467 37 100.0 37 ..................................... GACGCCGGGCGGAGTGCGGGCGTATCTCGAAAAACGG 5541 37 100.0 37 ..................................... TTAATAATTCTCGCGCATCCGCACGAGTGAGCCAATG 5615 37 100.0 34 ..................................... CAGATAATCCACACCACGCACGGACGCAAGCCGC 5686 37 100.0 35 ..................................... CTAGGTTTTTTGCGGTGCGGACGTGGTGGTGCGGA 5758 37 100.0 35 ..................................... ATGTTAGTCAACAATTGAGTGTCAAGCGCCGTATT 5830 37 100.0 36 ..................................... GCACTAACAACACGCTAACAACTAAACGAGATACGG 5903 37 100.0 35 ..................................... CAGTCGAAAGTGAGCAAGGCGCTATCTCCGTCGCT 5975 37 100.0 35 ..................................... CAAATTGTAACAGTGAGGACAGTTCTCCATTAAGT 6047 37 100.0 34 ..................................... GACGGCGCAAGCGGTCGATGATCCCAGACTCGTG 6118 37 100.0 37 ..................................... GACCCATTGGGTCTAAATGTGCGCAGGCGCGTACGCG 6192 37 100.0 37 ..................................... TAATCACGTCATCAATGCCGCTATTGCGCAATACCTC 6266 37 100.0 35 ..................................... ATGTGATTCTAGTGAAGCTACGCGCCAGCTTTCTA 6338 37 100.0 36 ..................................... GCACACGGTCAACACTAACGCGGATAAACGACAATG 6411 37 100.0 38 ..................................... AATTCAATTGCGAACGCACCGACCGGAAGGTGTTCACT 6486 37 100.0 37 ..................................... TCGTTTGCCGTCCGGCGCAAGCCGTGTCCGTCATTAG 6560 37 100.0 37 ..................................... TCGCCGTATATCGGCTTCACGTTATGCGTTATGCCAC 6634 37 100.0 34 ..................................... TAAAACCTAGCAAATTCAATAACTTATACCGCTT 6705 37 100.0 18 ..................................... CCAACTGTAGCAAGGCTT Deletion [6760] 6760 37 100.0 35 ..................................... ATCCACGTCGCCATTCTGGAGCGATCCAATCCCTT 6832 37 100.0 36 ..................................... GTCAACAATTGAGTGTCAATGGCGTTGTCAGTTGTG 6905 37 100.0 37 ..................................... CAATAAGCGATCTTGTTGAGATGCAACGGGTGCGGCT 6979 37 100.0 36 ..................................... GGGATTCACGATCCATTCCCAGCGATTGCAGCCGCT 7052 37 100.0 37 ..................................... TTTGTGGGCAATAATGCCCGTTTTCCTACCTGACCAT 7126 37 100.0 36 ..................................... TTGAATTGCGGATATTCGCCAGCGCCGTGACACGTT 7199 37 100.0 34 ..................................... CCGCTATTATCAGTCCCATACAAAAAAAGATGAA 7270 37 100.0 36 ..................................... GGCTTTCGCGGTATAACGGGGCGGTAAGTTCAGATC 7343 37 94.6 35 ...............TT.................... TAAATCAATAACTTACTGCATTCTGTATTATCCGC 7415 37 100.0 37 ..................................... TCATGTCTGCGATCTCGTGTTGTGTGTTGTTGTCGGT 7489 37 100.0 35 ..................................... AGATAATCAATCGCACTTTCTAGCGCGTCCAATGC 7561 37 100.0 37 ..................................... TAAATGCTGCAATATCAATGCGCGGTTTTTTGAAAAG 7635 37 100.0 37 ..................................... ACTACAGTCTGGGTGCTTTAATTGACGTGTAATGCAA 7709 36 86.5 127 .....................T.C......A.-...T TGATTGCGGCACAACAGTAGGATTGAAGGTGCTGCGCCGATTTTGACAATCATTTTGTGGTGGATCGACTATACAACAAGGATTGAAACGCACATCTTACGCCATTGTCGGTTTTCCTACAATGAGG G,CCA [7732,7738] 7876 37 100.0 37 ..................................... ATCCAACTCGCAGACGGCGCAGTGAAATCCAAAGCGG 7950 37 100.0 34 ..................................... CACAGCGCATCTATGACGCGGCAGCGCCGGTCAC 8021 37 100.0 37 ..................................... TAAATGCTGCAATATCAATGCGCGGTTCTTTGAAAAG 8095 37 100.0 37 ..................................... ACTACAGTCTGGGTGCTTTAATTGACGTGTAATGCAA 8169 37 100.0 38 ..................................... GCACATCTTACGCCATTGTCGGTTTTCCTACAATGAGG 8244 37 100.0 37 ..................................... ATCCAACTCGCAGACGGCGCAGTGAAATCCAAAGCGG 8318 37 100.0 36 ..................................... CTCAACGAAAAAATCAATCCCGCGTGGTTTAACGCG 8391 37 100.0 36 ..................................... CTCAACGAAAAAATCAATCCCGCGTGGTTTAACGCG 8464 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================================================================================================== ================== 47 37 99.6 38 GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Left flank : AATACAACAAGGATTGAAACATAGGGCGGACAAGTCTCCGCCTTGCGTTGCCATTAACGTTGCAACGCTAAATCCAATACAACAAGGATTGAAACCAGCATCAATCTGTTTTTTTATCGCAGGCAGTATCTGGTTGCAACGCTAAATCCAATACAACAAGGATTGAAACAATGCGAATAGGTCAAAGCAAGTTTAAGAATCACCAGGTTGCAACGCTAAATCCAATACAACAAGGATTGAAACCTGCTGGTTCGGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACGGCTTGACGCTG # Right flank : CTTTTTTAGAGGGCTAGGAGTTACGCAGTTGACCAAAAATAGCTTTAGGATACAACGATGAACGCTGCAAAATGTACAGAGAAGATTACATTCAGTTTTTAATCGCTACTCCGCGAACATATAGCTGCACGGAGGCTGCAAAGGTGTCGCCAAAACTTAATTCACCACCTGCACATGATTCTTTTACACGCTTATTAACGCGACTAGAGCCAGACTTCAAAGCACTATGGGAAGAAGTTGCACCTGAAATTGTAAAAAATAGCGGGGCGCTAGTTATTGATGATTCCACGCTCAATAAATTATATGCTAATAAAATGGATTTAGTTTATCACCATTGGTCTGGAAAACATCATGCTGCTGTAAAAGGAATCAATCTTGTCAATTTATTATGGACAGATGGCGACAGTTATAGTCGATCCAACATAAAATGAGTTATAAACTAAGGTGGTAAAAACACATGACTTATTCTATTGATTTTCGTCGTCGAGCATTAGAACTAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 4060-135 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000061.1 Chromatium okenii strain DSM 169 scaffold0061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4059 36 100.0 31 .................................... AATAACATCCTCGCTTTTAAAATATCCTCCT 3992 36 100.0 34 .................................... GGGTGGTAGCCGACGATGATGATAGCATCACACA 3922 36 100.0 30 .................................... ATCGTTTGAAGAAAGTAATCACCTTTTCTG 3856 36 100.0 32 .................................... CCCAATCGCCAATTTGCATTGGTGATCTCCTG 3788 36 100.0 32 .................................... AAAATCATCCCACCGGTAGAGTTCGATCCAGT 3720 36 100.0 32 .................................... GGAGATCGTCCAATACTTTTACCAATATTATG 3652 36 100.0 33 .................................... AAAAACGATCAATTGAAACCAATTTCGAGCCTG 3583 36 100.0 34 .................................... TGCCCCCAATGATTGCCAGCCACCAGGATGGTGG 3513 36 100.0 31 .................................... CTCTTGCGAGGTTAGGTGAAAACGCGACTAC 3446 36 100.0 32 .................................... GTGCGATCTTTGATTCATTGTACGAGTCAAAG 3378 36 100.0 33 .................................... TCCGAAAATCGTGTTGAAAAATTTTACGTCGTC 3309 36 100.0 32 .................................... GCGGCAGCTTGCGCTGCCGTGTTAAACGCAGT 3241 36 100.0 32 .................................... CCAGTTAGCAACCCATTTGGTTAGATCCTCTT 3173 36 100.0 32 .................................... CTGGGTCTATCCACACAAATGAGCCCCCCCAC 3105 36 100.0 33 .................................... CTCCATAGAACTGTTGGTAGAAAAATTCGTTTG 3036 36 100.0 33 .................................... TCGATTGACTCTAACTTTGAACCAGGCTCAAAC 2967 36 100.0 32 .................................... CCCTAATTGTGATGGCCTGAACCATTAACGAC 2899 36 100.0 32 .................................... CAGCAAAATCGGAAATATTCATGGTAAATCTC 2831 36 100.0 35 .................................... CCTTGATGATAAAGCGAAAGCGCGGTTCTTGCCAC 2760 36 100.0 32 .................................... CACGCCGAGATCAAGTCATCCGACGAAGAATT 2692 36 100.0 34 .................................... CTGAAGCATTGGAATCAATCGCTTTTGAACAATG 2622 36 100.0 33 .................................... CGGTGCAGTCGCACCAGTCGGAGCAGTCGCACC 2553 36 100.0 31 .................................... AATTGGTATTTGTAAACCACTAGTTAATGGT 2486 36 100.0 32 .................................... GGAGGTAAAATCACCTCCCCATATTGATGGGT 2418 36 94.4 32 ...........A......T................. ACATACCCAGGACGGGTGAAATCATCTTCATA 2350 36 94.4 30 ...........A......T................. CTCATAACCGTCACAGTAACGATGTGCATC 2284 36 94.4 33 ...........A......T................. ATTGAAACGGGTGGTTGAAACCCAGTCTTTGAC 2215 36 94.4 33 ...........A......T................. AACAGCGGAAACGGTGGTGCTGATGACACCCAG 2146 36 94.4 31 ...........A......T................. TTCGATTGCCTGGCGCACACGATGATTTAAC 2079 36 94.4 31 ...........A......T................. AGATAACCAAGTTCATTTACTAAAACTGAAC 2012 36 94.4 31 ...........A......T................. ATGGTGATGGTTGCAGATGATGTATGTGTAA 1945 36 94.4 31 ...........A......T................. AAACGCCGTTGAGTGCACCTGAGACGGTGCG 1878 36 94.4 31 ...........A......T................. AACCCAATCAGATTGTATTTTGTGTCAAACT 1811 36 94.4 32 ...........A......T................. CTTTAAACCACCAAAGAAGGGCCGGCCAATAT 1743 36 94.4 33 ...........A......T................. ACTTATGGTAATGCGCCTCGGCGCGGACTACAG 1674 36 94.4 31 ...........A......T................. CATTTGGTTAGACTCTCTTGTTAGAGATATC 1607 36 94.4 32 ...........A......T................. GGCCATAAAGTCCTCCTAAAAGGATGAGCAAC 1539 36 94.4 31 ...........A......T................. CAATGACAGCGTCTGCATACGCATTTGCAGC 1472 36 94.4 32 ...........A......T................. CATTTCATTACGACAGATTCGTAATTCCATGA 1404 36 94.4 32 ...........A......T................. CGTACTCCGGTTAGCAACCCATTTGGTTAGAC 1336 36 94.4 33 ...........A......T................. GATACCATAATACATACTTCCTTCATTACCTTT 1267 36 100.0 34 .................................... CGTAAAGGGGTAGGTTCTATTTATTTCTTAATCA 1197 36 100.0 31 .................................... TCAGCCATCTTACATACTTCATGGCAGCCTC 1130 36 100.0 31 .................................... TTCATACGATGATATGTACATCCCCTCTTTT 1063 36 97.2 33 .C.................................. GTATTTTTCTAATACACAACTAGGATTTACATC 994 36 100.0 32 .................................... TGAACTCATAAAAATTTTTCATTGAAATCTCC 926 36 100.0 33 .................................... CCTCTCCACACTCCCCCAAGCCAGCCTCCGGGT 857 36 100.0 31 .................................... GCCGAATACGTTGATTATGAGATATAATCTC 790 36 100.0 31 .................................... AGTTCATTGCTTTTACATCGTCGTCAGACAT 723 36 100.0 33 .................................... GTCGATGGTGGTTATAGGCGGCAGTGCCGCCCA 654 36 100.0 30 .................................... GTCCCGCCACCACCTCAATGTGGTGGGCGC 588 36 100.0 32 .................................... TCAGCATATACAAATCAAAAGCAGCGGCTCCA 520 36 100.0 32 .................................... GAAGAAATGCTCAATACTGACCAACTTCGAGC 452 36 100.0 32 .................................... TTAGTATCTCCTCATTCATCTTGATGACGGTT 384 36 100.0 32 .................................... TGACGTTAATGATAGCATCACACATCACTGTG 316 36 100.0 41 .................................... AACTCTTCTCTTCGTCCACAATCAGGCCTACCTGGTTGTGG 239 36 100.0 33 .................................... ATAACCTCCTAAAAGGTTGCGATAGGGACTTAA 170 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 58 36 98.3 32 ATTTAGCCGGTTGAGCCGAATTAGAGGCGATGAAAC # Left flank : GTCTTTGCGCACGGCGTTCCACGCCTGATTGAGGACGGCGGCGCTGGCGATTTGTTTGATCCAGTCGGTCATGGGTGGAAACTCTCGCTGGTGTTTTTTGAGTAACGCAGCGAGTGGTCAATTTTTAATCTGGGGAGCGGAAAATGAGGAGGCGTTTTGGGGTTAAGTGTTTGGTTTTTCATTCATTTTTGTTGTAAAATGATGACTTGATCCGCTGGGATTTTAGTAATGGCTGAGTGTTTTAGTCTGGAATGGGTGGCATGTGCGGCGGCAGATTGAAAGTTGTTTACAATCAACTGCTTTTTGTATTTTTGTCTTAAAACGGGGCGTGTGCGATGCAGGCGTTTGGTAGTAGCGGTTTTGCTTTAACTAAGGCAAAACCAATCAAAGGGCGTGGTGCCATAGAAATAACCGTCTGGATTTGTGTGGTTTTTGGCGTAGATTGTTGCTCAGTCTCCACTGAGTGCTTGGTAGTAACTGAGTGTTGCGGTCGGAAATTG # Right flank : CTAATCCATTATAGTTATCCGCAAAACATACTATACTATAAGAGAAAATGTAGGAGCTTACGACAGTGAAACTGTGCAACGAAGACCAACTTTTGAATTTCTTAAGACGTGAAGAAGACAGTTCAGTTAAGTATA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAGCCGGTTGAGCCGAATTAGAGGCGATGAAAC # Alternate repeat : ATTTAGCCGGTAGAGCCGTATTAGAGGCGATGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 149-2630 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000070.1 Chromatium okenii strain DSM 169 scaffold0070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 149 36 100.0 31 .................................... GCACGGCCGCCACCAACCGCTCGAGGATCTC 216 36 100.0 32 .................................... TACTAAATCATTATCTAATATATCTAATAACT 284 36 100.0 33 .................................... CGGCTTATGGTGTACGGAGTCCCTTCTTTATTC 353 36 100.0 33 .................................... TTTCAGGAACCGGCCTACCTCCGCCACCGTCAG 422 36 100.0 32 .................................... TAAGCAAAAATAACGCACCCACCGCCAGTACG 490 36 100.0 32 .................................... GGTGGAATGGGTGCCGCAGTAACTGCTGCGGC 558 36 100.0 33 .................................... TTCCATTCATAGCCTTCAGCGAAGGTTATGTCA 627 36 100.0 33 .................................... GGAGCCAGCGGCGCGGTTACAGGAGCTGGCGCT 696 36 100.0 32 .................................... GAAACCTTCGGTGAATTCCATCGAAATCGTGT 764 36 100.0 33 .................................... TTTCTTAAAATATGAAATGCAGAGTTTTGTCAT 833 36 100.0 32 .................................... CTTATCGGACTTACCTGATGCCATGATAAAGG 901 36 100.0 31 .................................... CTCTATCTCAGCAACGAACATGCCATCAACT 968 36 100.0 33 .................................... TTTGGCGATCTGAAGAATAGCGGCATCAGTACA 1037 36 100.0 32 .................................... GGTTATACGGCGTATAACCCTAACTTGCAGGC 1105 36 100.0 32 .................................... CAAGTACCACCATTTTTACCTCGTTGAGTAAC 1173 36 100.0 32 .................................... TTTAACGTCCCTTTTCAAGACGGTTTTTTAAC 1241 36 100.0 33 .................................... ATAATTTTCCCTCCTCAGGAAAATTATAAGTAA 1310 36 100.0 31 .................................... ACCCCGGCGTGAAGTCGCACAGATACCACAC 1377 36 100.0 34 .................................... CATGGTCAAACCTCCGGTTAGCAACCCATTTGGT 1447 36 100.0 30 .................................... ACCTCGATATGCTTATTATTGAAAAATAAC 1513 36 100.0 32 .................................... GGAAGGTTGCGATAGGGACTTAACTCTGAAAC 1581 36 100.0 31 .................................... TTTACCCAATCGGCTTCTACATAGCCGTGGG 1648 36 100.0 31 .................................... CTTCTCCACCAGCAGTCCACGAACCATTAGC 1715 36 100.0 33 .................................... GGTAAATCTCCTGAGGCTTTCTCAGCCTCGTTG 1784 36 100.0 32 .................................... CCCTCCATATCTCCGACATGGATGTCAAAAAC 1852 36 100.0 31 .................................... ACTACCACCGGCACCGCTATCCATGCGGTGG 1919 36 100.0 31 .................................... CGGTAGTACCGTTAGCTATAGCTACAAACCG 1986 36 100.0 33 .................................... TAAAAATTTGTTTACCATAAAACCTCCTAGAAG 2055 36 100.0 33 .................................... GGAGGTGATACTCTTCATCGCTTAGATGTCCAT 2124 36 100.0 33 .................................... ACGCCCCATAGGAGGCGGTGCCATCTGCTCATT 2193 36 100.0 30 .................................... ATCATCGTCGGACATCTTATACCTCCTAAG 2259 36 100.0 30 .................................... AATTGGCAAAGAACGAAAGTTGTCTGCCGG 2325 36 100.0 31 .................................... TCTTGAGCTTGACGGTAAGCTCGCGCTTACC 2392 36 100.0 31 .................................... TCTTGAGCTTGACGGTAAGCTCGCGCTTACC 2459 36 100.0 31 .................................... GTATAGCGATTAAGCCCTGATTCGCATTCTC 2526 36 100.0 33 .................................... CATGTAAGTTTCGCGAGTTGGCGTGGTAACGCC 2595 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 37 36 100.0 32 ATTTAGCCGGTTGAGCCGAATTAGAGGCGATGAAAC # Left flank : ATGAGTACTTAAAGTCAGTCATCTCTGATTCTTGGGCTGTATTCAGCAAATCATCAAGCTATGCCAAGGGCTGGATAGAACAGTTCGTGCCTTGGGTGCTGTATGGTTAGTTTTGCGGACAACTATAAATCTATACAGCCATACCAATA # Right flank : GCCGCGCCTAGCAGCGTTTGCTTGTAGAGCTCGATTTAGCTGTCAGGAACCGTATGATTATATTCCGCGACGCAGCTACCCGCTGTTTTTAGCACGAGAGGCTTTGCAGGCCGTCATCACGGACATTCACCAACGCGCCCTACATCCCCAAGTGGTTGGGCACTCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAGCCGGTTGAGCCGAATTAGAGGCGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 15-1816 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRQ01000076.1 Chromatium okenii strain DSM 169 scaffold0076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 100.0 38 ..................................... TCAGAATGAAAGAAGACCATACAGTAGAATACAAACAA 90 37 100.0 36 ..................................... CCTAACCCGCCGAGCGGATTCAGCGGATTCCGTTGA 163 37 100.0 36 ..................................... ATGACTTTGACAGGTGAGATATTGAGCAGTTACAGC 236 37 100.0 37 ..................................... CCGACGAGCTTGCCTTCCTCTAGCCACTGGGCGCACA 310 37 100.0 36 ..................................... CTATTTTCTGCGCGGCTGCGGGTTTATCCAAACCGT 383 37 100.0 36 ..................................... GACATCGCCGGACTCGGTGGACATTTCCGGACTTTG 456 37 100.0 35 ..................................... CCTGCCGGTTTTCCGTCAAGCCGTGTGCAAACTGT 528 37 100.0 36 ..................................... GAAAACAGATGGGCAGATCGAATCTGCCCATCTGGT 601 37 100.0 37 ..................................... TCTAAACCCGAAGTGCCACTCACGCCGTTATCGGAAA 675 37 100.0 36 ..................................... CACCTCGGCATTCAAGCGGATACCGGCTTGCCAATT 748 37 100.0 37 ..................................... GCATTAGATGAAATCGGCGAAGCTGACCCTAAAGAGG 822 37 100.0 35 ..................................... ATAACAGTGCCCGCAATTCATCGCCGCCACCGCTG 894 37 100.0 38 ..................................... GTAAAACCGGCGCTGCGCGGGCAATAGCACGGTGGCGT 969 37 100.0 35 ..................................... GATGCAACGCCGGTTCAAAGCCGGGACATATTCCG 1041 37 100.0 37 ..................................... TCAGGTTTACGACAATTTAGCGCGGACGCGGAAAACC 1115 37 100.0 37 ..................................... AATCGGCACACGACCGCGAACAGGTCGCCGGTCTCCG 1189 37 100.0 36 ..................................... CGTAACCACGCGTCAATCGTAGGCAATGATACAGCA 1262 37 100.0 37 ..................................... CTTCGGATGCGAAATGGTGCGACGGCACCCTATTCTG 1336 37 100.0 38 ..................................... TGGAGGGAGCTGTCCGCTGGGTCGGCAGCATCCTACGG 1411 37 100.0 37 ..................................... CAAGTGCAGGCAACAACATTGCGCGATTTCATCAGAT 1485 37 100.0 37 ..................................... CCCGTGTTGATAGCCGCACTCAACTCAAAAGCAGAAT 1559 37 100.0 37 ..................................... CAGCGTGTCCGGCAGTCTTGATAGCGTCCTTTAATTC 1633 37 100.0 36 ..................................... ATCGGAAAATCTAAAGATAGTTACGGCTTGACGCGC 1706 37 100.0 37 ..................................... CCTTATCTTTCTCGCCGTAGGAAGCCGATCTGCTCAA 1780 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 100.0 37 GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Left flank : CAGCATACATATTTG # Right flank : ATAAAGACAAGCCCGGCGCTGTCATCACTCCCAATTGTTGCAACGCTATAGTTATCCGCAAAACATACTATACTATACTATAAGAGAAAATGTAGGAGCTTACGACAGTGAAACTGTGCAACGAAGACCAACTTTTGAATTTCTTAAGACGTGAAGAAGACAGTTCAGTTAAGTATAGACTTGCTTTTCTGAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACGCTAAATCCAATACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA //