Array 1 2306098-2305475 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014696.1 Clostridium botulinum strain 111 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2306097 30 100.0 36 .............................. ATCCATAACTAAATCCCCTACTTCATCAAATCTCGT 2306031 30 100.0 37 .............................. AGCCTTATTATGACATTTTTTCTATTTTATAATAAAA 2305964 30 100.0 35 .............................. TATAACTTTCTTTCTTTCTTGCCTTTATAAGAATT 2305899 30 100.0 36 .............................. TTGTCTATTAGATGTATGTATTAAGTGATACATATC 2305833 30 100.0 37 .............................. GCATATCCATGTCATCAAATTGTTTTTATTTTAAATA 2305766 30 100.0 35 .............................. ACAAAAACGCTAAAGAATATGCTAAGAAAATGGAT 2305701 30 100.0 36 .............................. TAGTTAACCATAAAAGTTCATTTATATAATTAAACA 2305635 30 100.0 34 .............................. TGCTGATGTTAATACAAGATATGTTTGATAATAG 2305571 30 100.0 37 .............................. AAGATACCACAAACTGATCCTGGAATGGATAATTTAT 2305504 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.3 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : TAAGCAAGATATAAATGTGTTGAATAGTAACATGAGATGTATTTAAATTCATATAGCCAACTGAAAAAAGATTTTAGAATAGATGTTGAATAGTAACATGAGATGTATTTAAATGCCGTTGCCTTTCTTTCTTCTTCATTTACTATCCAAGTTGAATAGTAACATGAGATGTATTTAAATGCTGTAACATTTGCTGCGTTACCTATTGCGGCATTTAGTTGAATAGTAACATGAGATGTATTTAAGCAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGGTTTATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATGGTTGAACCTTAACATAGGATGTATTTAAATTACTGTAATAACCTCTCTATCTCCGGAGCATGATATGTTGAACCTTAACTACTGGTACGTTGAACCTTAACATAGGATGTATTTAAGCAGAGAACCCAAATCTACGATTTGGTGTGAATCGCTTACTTCTTAGAGAATGGCATAGGGATTTTTATAAAACTAAACTATGCATTGTGATAATTTCTATGCAAATTATTAAATTAATTTTAAAAGCCTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 2306713-2306351 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014696.1 Clostridium botulinum strain 111 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2306712 30 100.0 37 .............................. TTAAGAACATTTGTATTGTAATCAACTGTTTTCTTAC 2306645 30 100.0 36 .............................. AATAATGTTATTAAAAGATAAGCAAGATATAAATGT 2306579 30 100.0 36 .............................. TCATATAGCCAACTGAAAAAAGATTTTAGAATAGAT 2306513 30 100.0 36 .............................. GCCGTTGCCTTTCTTTCTTCTTCATTTACTATCCAA 2306447 30 100.0 37 .............................. GCTGTAACATTTGCTGCGTTACCTATTGCGGCATTTA 2306380 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.9 37 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : TAAAGGAGAAGATGTAGATGGGAAAAGGATTTAATTATAATTATGCTTTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAACAGAGTATTTAAAGTTTGCAAAAAATATTTATCTCATTTCCAAAAATCTGTATTTAGAGGAGAAATAACACCAGCAAACTTAATATTATTAAAAAGGGACTTAAATAAAGAAATAGATGAATGTGAAGATTTTATATGTATTATAAAGCTAATGAATAATAATGTATACGGAGAAGAAATATTAGGGAATAAAGCAATGACAACAGGAGAAGATTTAATATTATAAAAAAATGGAATCAATTTTTCCAACCAATTTTAATTTTAAAACCTATCTTAGGCATTAAAATATAAGGCTTAAGATAGGTTTTTATTATGAATTTATGAAAAGTGGGAATTGCCTGGAAAATTTTCTGTAAAAGCTTGTAAAATCAATACTTCTATGGTATTCTTGGTTTTAAGGAATGGCTATTTCCCTATG # Right flank : AGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATATCCATAACTAAATCCCCTACTTCATCAAATCTCGTGTTGAACAGTAACATAAGATGTATTTAAATAGCCTTATTATGACATTTTTTCTATTTTATAATAAAAGTTGAACAGTAACATAAGATGTATTTAAATTATAACTTTCTTTCTTTCTTGCCTTTATAAGAATTGTTGAACAGTAACATAAGATGTATTTAAATTTGTCTATTAGATGTATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 2316672-2316248 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014696.1 Clostridium botulinum strain 111 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2316671 30 100.0 37 .............................. CCGATCCAGTTAAAAAGGAAGCCACTGAGGCTAAAAA 2316604 30 100.0 36 .............................. GCAAAAGTACATTGCACAAACGGATATAAGGTATAT 2316538 30 100.0 36 .............................. CAGGAGTTAACAAAGCCTGCTTTCACTTCCTTTTGT 2316472 30 100.0 34 .............................. GTTAATCCAGCTTTTAACATTGATTGACTTGATG 2316408 30 100.0 35 .............................. TGATATTTACAGATCCATCTCCTATATTTTTAACT 2316343 30 100.0 36 .............................. GCTTTTTCAACTGCTTTTGTAGCAGCTTGTAATTTA 2316277 30 90.0 0 .............G.A.............C | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATTTTGAATTTATTATTGTTGATTAAAGGAATAGTAAATTATTTCAACAGAGCAACAGGATAATCTTTTTAACAAATACTTATACAAAGTATTGTTCTATGGAAATGCCTATGAAAACTATTATTACACAATTTGGTGGGGAGGAAAAGAATTATAGATAGATAGAAGAAAAGGAAGCAATGTATCAATTAGAAGCCTTAAAAAGGGCTAAATATTACATGAAGTTAACAGATGATATTTAAAAAAGTTCTTGTTTAGGTATATAAGCAATTTTCACCTTAATCATAATAATTTTCACTTGTTTTCTAAGTATTAATTTAAATTTTTCCAAGTGAATTCAATTTTAAAATCTATTCTAGCTATTGAAATTTAAGGCTTATAGCAGGTTTTTATTATGAATTTTTAAAAAAGCAAAATCACTTGGAAAAATTTCTGCAAAACCTTGTAAAATCAATAGGTATATGATATTCTTTAAAATAAGGAATGGCTATTTTGCTATG # Right flank : TTAAATGAGTATGAAAAATTAAGTGTAATTTAACCATAACATATGATGTAAAATCATTATAAAGATTATAATCTTTATAATGATTTTTTAATATTTTAAAAAATAATATGCAATATTATAATTATACGGAAAATGTTGATTAAATATAAAAAATGTGGTAATATAGAATAAAAATTCAGAAAATTGTCAATATTCAATAAAAATGCAAGTGAAGACTGGAGGTGAAGTAATGAAAGTATATGAATTAACACTAAAGATATTTCTCCTTAAAGATTTAACAGTGGACAAGTCCTATGAAAAATTAACAGAATTAATTGACAAATCCCTATGTAAAGATGATGAATTATTAGCGTTACATAATGAAAATAAGTATAAATACTATACCTTTTCATTACCATATAAATTAGAAAAAGATAAAGTATATAAAGCTGGAAATATATATTCAGTAAAAATAAGAACTATTGATGAGAAAATATTAAAGAATTTCAAAACTCAGTTAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 2327916-2327561 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014696.1 Clostridium botulinum strain 111 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2327915 30 100.0 34 .............................. GCCAATTCTGTTCTTTTTTAAAATACTTTATATT 2327851 30 100.0 37 .............................. ACTTCAAGCCCGTTTTCTATTATATCTTTTAGATTTT 2327784 30 100.0 36 .............................. AAAGAATATATGTATTATCTACTCTATATTATTATT 2327718 30 100.0 34 .............................. TCAAAAGAATTAGTATTATTTAGATTAGTATTAA 2327654 30 100.0 35 .............................. ATGGTTTTGACTTCCATAGAAAAAACTGAAAAGCC 2327589 29 86.7 0 ........T......A......G..-.... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 35 ATTGAACAATAACATGAGATGTATTTAAAT # Left flank : AGATATTATGGCTAATTTCGCAGAATCATTAAGTATTCCAAATAGTTGTTTGATTAAAGAGGATAAATCAAGAAATACATATCAAAATATACAAAATTCAATAAAGATAATGGTAGATAAAAATTGGTCATCAGCAATGGTAGTAACTTCTCCCTGGCATTTAAGACGTTCTAACTATTTTTTATCAAAATTCAATATTACATATCAAATGGAGAAATCTGACTATCCAAGAGAATTCTCTTATCTTTATATTATTGCTATATATATGGGGAAATTATGTAATGACCAAAACAAAAACAAAAATAAAAAGATACTAATACTATTATTCCAAGTACAATAAATTCACAAATCTATTCAAGCTATTGAAACATAAGGCTTAGGATAGGTTTTTATCATGTATTTATGTAAAACCAAAATCACTTGGAAAATTTCCTATAAAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : TGGGATATGATTTTTACATTAATTAAATAATAATCGTAGTTTATTATAAATAGTATGGAGGTAGATTTTGAAGCTTAAAGTAGTATTTTTAATTAGTCTTATTATGTTTATTCTTGGTATATACTTTTCCAATAAGTCTAATTTTATGATTTTAATTGGAATATTAGGTGGAGGAATAATGGGATGTGTATCAGCATTTATAGGATATTCTAGAACAAATGCTATTAAAGATAAAGAGACTAGTGCATAAAAGAATTAATTTTTTATTATCTCATGGATTAGGCATGTGTTAAAGTTTTCAATATTAACATAAGCATTAAAAATTAATATTATATATGATAAAAATTACTAGAAGTCTTAGAAAAATCTAAGGCTTTTATTTTATGCAAAGATTTAGAATGGAATATGATAGGTAATTAATTTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATTAATTATATTAACTAAAGAGTGTATGGTATAATA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 2330009-2328863 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014696.1 Clostridium botulinum strain 111 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2330008 30 100.0 34 .............................. ATTATTAAATGACTTAGAGTGGTTTATGAATAAG 2329944 30 100.0 37 .............................. GAAACTATTTCATCTACTGTTAGTGCTATAGTTTCAT 2329877 30 100.0 35 .............................. TTATTTAACAATTTGTTTTTATTTTTTTCTTCCTT 2329812 30 100.0 36 .............................. TGAGGGAGGGGGTGTTTTTACATTGCCCCACATCCT 2329746 30 100.0 35 .............................. TAGTTTGAGTGGGTATGGTATGGGGTACATGGGTG 2329681 30 100.0 36 .............................. ACGTTTACGGCACTTTAAAACCCTTTTTCGATAAGG 2329615 30 100.0 37 .............................. CAACACTTATACTTTGAGCAATATCTTGTTTCCCTAA 2329548 30 100.0 36 .............................. CCTTAATTCTATCTCCATTTAGGAGACAAGGCAATT 2329482 30 100.0 36 .............................. ACAGTTACAAAATAAGACTTATCTGAAAAATAAGTA 2329416 30 100.0 36 .............................. GACATATAATCATAGATATTGTAGCAATCCTGATAT 2329350 30 100.0 36 .............................. AAGGGAACTTGTGTGGAGTATAGAAGATAAGGACGC 2329284 30 100.0 36 .............................. TTAGGTTTAACTGCACCATTTAGCATAAAATTCTTT 2329218 30 100.0 35 .............................. TTTAATAATAAACTAAAAAATGATACGGTTGTTGA 2329153 30 100.0 34 .............................. AAATATTCAGGATTGTTTATTTTAACCTTACTTT 2329089 30 100.0 38 .............................. GCGTTTACTTCGTTATAAACACCATTCCAACCAAAGGT 2329021 30 100.0 34 .............................. TGTCTTTTTCTATTTGTCCTACTCTATCTTTGTA 2328957 30 100.0 35 .............................. TTTAATAGGTTATAGCATATATTTTCATATGCAAA 2328892 30 96.7 0 .........................C.... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.8 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : GATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGAATTAAATGGTAAACAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAACCAACTTTAGCTTACAAACCTATCTTAGCTCTTGAAATATAAGGCTTAAGGTAGGCTTTTCTTATATATTTATAAAATATTATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAACCAATGTCTATGTGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AATATGGTAAAAATAGTATTAAAACCCTATTTTATTTATAAAACTTGTAGAGCTAATTTATATTAAATGATAAAATTATAAGTGGTTGAGTCGGTGCGAAACATGTATAAATAAATTATACGCAATGAATGGAGTATAAAAGGAAATGGATGCTAATATTCTTATTATTTTATTAAAGTATATGGCAATAAGTGATTTTATTTTTATTATTATAATCCTTGTATTAATCAACCTATATCCTCTTTTGCTTTATAAGTCTCCTGCAACAAAATTGAAAAGGGATAGATTTGATGTGATAATTATCTTAGGCTTTCCTGCATTACAGGACGGGAAGCCTTCTCCGATAATGAGAGAAAGAGTTATAAAAGCAGTTGAATTATTTAATAAGGGATACGCTAATAACATTATATGTTCGGGTGGAGGAGTCTATAATAAATATATCGAAGCAGATATTATGGCTAATTTCGCAGAATCATTAAGTATTCCAAATAGTTGTTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 6 2331537-2330920 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014696.1 Clostridium botulinum strain 111 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2331536 30 100.0 35 .............................. TTTTGAAATGATATAATTATAGTATCAGTTGAAGG 2331471 30 100.0 36 .............................. ATTTTTAAACCATAATTAATTAAGAATATTATTAAA 2331405 30 100.0 36 .............................. CAATATCTATAGTAGTCCAAAGCCTTAAACTATCCA 2331339 30 100.0 35 .............................. CAAGAATAATACCATCCATTTTCTTGACAATTATC 2331274 30 100.0 36 .............................. TGTAGATAACAGTTTAGTAAGAGCTAAAAGAATAGA 2331208 30 100.0 34 .............................. TCATTTACATATGCTACCATACGGTTGCTTTTGT 2331144 30 100.0 34 .............................. AAAGACTTCTTTATTGGAATTAAGGGAAATGAGT 2331080 30 100.0 35 .............................. TTTAAATATCTTACTTTTCCTATGTAAATTCTATT 2331015 30 100.0 36 .............................. CTATACTATTTGCTTATGCAACAAGTAACAATCTGT 2330949 30 90.0 0 .......................C.G...A | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.0 35 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATTTACAAATTAAAATTATTTATGCAATGGGAAGAGAAAGTGATTTTGGCCATTGATTGTTTGAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTGAGTCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGTTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 2337799-2336918 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014696.1 Clostridium botulinum strain 111 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 2337798 27 89.3 36 .......AA......-............ ATATGTTTGCAAAACTCCATAAAAAAGAACCTTGTT A [2337780] 2337734 27 89.3 38 .......AA......-............ ATAATTTCACATGAGCTATTAAAAGTTGATAATAAGCT A [2337716] 2337668 28 85.7 37 .......AA......AG........... ATATCTCAGAAGGTGTAAAATTATTACTTTCTGATAA 2337603 28 85.7 37 .......AA......AG........... ATCTTTTCCCGGAAAGAAAAATCCAAGACATGGAATT 2337538 28 89.3 36 .......A.C.....A............ ATCCGAGTACTGGAACTTTATCTTCTAATTTAATAT 2337474 28 89.3 36 .......AA......A............ ATAATGGTTCTATTTTATTATCAAATTTATGAATTA 2337410 28 89.3 38 .......AA......A............ ATTTCCTCCAACTTTTAGAAGATGTTATTTCTACCACA 2337344 28 92.9 61 .......AG................... GCAGGAAACCCAAATCTTTGATTTGGCATGAGTCGCTTACTCCTTCGAGAATGGGAGAAGG 2337255 28 100.0 38 ............................ ATGATAACTACTGGAACAGATGCAAAAGGAAAAGTAGA 2337189 28 100.0 36 ............................ ATCTTGCTTCACTTACTATTAGCATTAATCTAGTAG 2337125 28 100.0 117 ............................ GCAGAGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTCATTCGAGGTGAGGAGAATGAGTTTCATAAAACAATCAAAGCTTTATTATTTTAAAATTAAATATGCTTTTAAATC 2336980 28 89.3 5 T................A........T. CTATG CG [2336958] Deletion [2336948] 2336945 28 85.7 0 .......AA......A..........G. | ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 13 28 91.2 43 GTTGAACCTTAACATGAGATGTATTTAA # Left flank : TCAGCAAGAAAACAGATGAAGGATTTGTTTTAAATACAAATGGAGAAGAATCAATTATTAATGCTGATAGTGCTGTTGTAGCTATTGGATATTTATCTGAAAAAGACTTATATAGTGAAGTTAGATTTGATATTCCAAATGCAAGACTAATTGGAGATGCTAATAAAGTTCAAAACATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATAAACTTTTGCAAAAAACTAGAATGGGTTAATATCCATATCTAGTTTTTTGTTTTTTACTTAAATTCTATAAGTATATGAGTGTTTGTCAGGCTATATTTTCCCAAACGAATTCAAATTTAAAGCTTATTCTAAGCATTGATATATAAGGATTAGAATAGGTTTTTATTATGAATTTTAAAAAAAGTAAAATCACTTGGAAAAATTTCTGTGAAATCTTGTAAGATCAATGGTTATATGATATTCTTAAAAATAAGGAATGGCTATTCTACTATG # Right flank : GCATAGAACCCCAATCTGTGATTTAGGGTGAATCTCTTACTCATTGAGATATGGAGAATCAGTTTCATAAAACAAGTGAATCTGAGTAGATTTTTATTGACTAAAATATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGTCTATATAAATTGTTAGATACTAATTATTTGAAAATTTATTTAATGAATCATTATCCTTAAATAAGTTTTTTAAGCTCCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTGTCTACATTAAACTTAATAATTTCAGCGTTTGGTATAAGAGATAATAGTACCACCGCATTCTTTTCTAAAAGCTTGTTAGCTTTTTTGTCACTCCAAAATTTATTATAATTTTCTTCACCTAAATTTTCATTTGCTTTATAGTTAACAGTTATTTCATATGG # Questionable array : NO Score: 4.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.95, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 8 2351032-2350475 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014696.1 Clostridium botulinum strain 111 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2351031 30 100.0 35 .............................. GAAGATAGAGTTTATACAAAAGTTGTACTTATACA 2350966 30 100.0 36 .............................. AAGAAGAAAATAATTCTACTAAGCCAATTCATATAA 2350900 30 100.0 36 .............................. TTAAAAAACTCTTCTTGTTCTTCTTTTGATAGCCTA 2350834 30 100.0 36 .............................. TGAAGCTGGTACTAGGAATCGCTATGAACTGGCTGG 2350768 30 100.0 36 .............................. TTACAGAAATAAATCAGGTTTATTCAAAGAATATTG 2350702 30 100.0 36 .............................. ATATATATGGAAGTCAGACCTGTTTTATTGTCAACA 2350636 30 100.0 36 .............................. AGAAAATAATGATACAGGTATAAGACGAAGAAGAGG 2350570 30 100.0 36 .............................. TTAAATTTTATCTCCTCTATTTTTTTAATAATTTCT 2350504 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 100.0 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : CATAGGCAAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTATAGCGCCTTCCTAAAATAGGCTCCGTTGAGGTTACACCATTTCTAAATTCAACTGAAAGTTTATCAGTATTCAATTTGCTCATTTAATCCCTCCCCATACAATACGTTTTATACAATATTATATGATAGGATTTATGAATTTAGTATATTTATATATAAATCAATTTTAATTATAATATTTAACTTAAATCTTGTATCAGATCTTGTACTACCAATAATATATCAGCTAATAGTACAAATAAAATATTTTCATATTAATTGAATTTTTCCAGGTACAATAAATTTATAAACCTATTCTAGTCATTGATATATAAGGATTGGAATAGGTTCTTATTTTGTATTTATAAAAAAACAAAATCACTTGGAAAACTTTCTACCAAACCTTGTAAAATCAATGGGTTTATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTGTACATAATCTGAAATTAAAGCGAGTGCGAAACGTTCCTAACTGAAAAGGTTAGACACTAAGTTAACAAAACTTAGGAGAACTGATAGTTTGAAAAGTCAAATGATAGGGTAACGCCTTGAAGGGCTTTCTTTAATTTACGACTAGCGTTTTAATTAATAAGAACTAAAATGTTAGAAGCTCGTTGAAGTCGGCTGAGAATACACCCTAACGGGTCAAGCTGAGGAAATGCGAACCAGAGGTGGTCGAGTGTATGATAGGTCGGGAGTCTATAAAATATCTATGGTGAGTATGATACGAAATAAAGCAAGTATCTGACAAATGACTGATTGTACGGGTCTAAATAATTGAATAATAGAAATGTTATTGCTACAAGTGTAGCATCCAAGAGGTTGAGTAAGAATTCGCAATATGAAAACCCTCATAATGTTATAGGCATTATTGTTTGGATAGGCTCATAGGGAACACCTAAGGATATATGTAAAGATAAAACTATTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //