Array 1 394989-398428 **** Predicted by CRISPRDetect 2.4 *** >NC_016593.1 Geobacillus thermoleovorans CCB_US3_UF5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 394989 30 100.0 39 .............................. TTGTTGCCCCTCCCCGAACACTTCCTCAACCTGCTCCAA 395058 30 100.0 37 .............................. CTCCGCGTAATTCGCTGTCTGTTTGCGTTTGCGCCGG 395125 30 100.0 37 .............................. AATCCTCCGTGATGTTTCCATAGCGAACGGTCTTGCT 395192 30 100.0 37 .............................. TTTCATTCATCATTCTACGTACTTAGACGACGAAAAG 395259 30 100.0 36 .............................. ACATGGGCAGTCGGCAACGCGGTGACACGAAAAGAC 395325 30 100.0 39 .............................. CAACAAAGAGTCCGACGACGATACGCTTGAGATCATCGT 395394 30 100.0 36 .............................. CTTTTTGCAACGTCCGGGACCGCAAAAACGATAGGT 395460 30 100.0 34 .............................. GCAATACCTTTGAATCCAACCTTGCTGGATAAAG 395524 30 100.0 39 .............................. TTTGGTCCATGATCGAAAAGATAATAAACGGCGCCGACT 395593 30 100.0 36 .............................. TTCGTTGGATGACGTCGAGATTGTCACGGTTCCGTC 395659 30 100.0 38 .............................. GGTTCTTGTGACAGAATGCCAACTTGTACAGCGGCATT 395727 30 100.0 35 .............................. GCAGCGCCGGTTGTCGAGGTGTACCTTGCGATTGA 395792 30 100.0 38 .............................. CGGCGACAACGGGAAACGAATCATTACGGACATAATCC 395860 30 100.0 38 .............................. CACTTGTAGAGCTAGAAGGTTCCCTTCGGAATACGATG 395928 30 100.0 36 .............................. GATTGGTGAACTCCGGTCTTACCGCGGTGATGCTCC 395994 30 100.0 35 .............................. GTTGGTATCTGCGAAGTGGTCGCGTATCCAACGTC 396059 30 100.0 37 .............................. CCGTGGCAACCGTGGTACATGGAACTATTCGGAAATA 396126 30 100.0 38 .............................. AACTGGTGGCAGGAGCAAATATTTCTCTTACTCCAGAC 396194 30 100.0 35 .............................. TGCACCAAAATAGACCTGGCGATGACGCTAAGGAA 396259 30 100.0 40 .............................. TTGAATCCCGTTGATTATGTACAACGCCAAGTGCTGAAAA 396329 30 100.0 36 .............................. CAAGCATTGGAGGGAAAAGAATGATCTACATCTTGC 396395 30 100.0 35 .............................. TCGCTGAAACAGCTGACTCGGTACAGTGAAGCCGA 396460 30 100.0 36 .............................. ACACAACGGTACGGACATATCAGCTGACGCCGGAGC 396526 30 100.0 35 .............................. TCCACGCTTGTAGTGAAAACAACAGCCGGAACTAC 396591 30 100.0 40 .............................. GCCGAGGCCGAGGCGAAAGCGTTGGTGAAACTATTGCCCA 396661 30 100.0 39 .............................. GCATCTCGTTCCGGATGCGTGTCAGCACATTCAGCACAT 396730 30 100.0 36 .............................. AGGCTCGCTATGGCTACGACAACATCAGTGGAATAC 396796 30 100.0 36 .............................. TTATATCATCATTTGGTGATTTGTAAACATCTTTTC 396862 30 100.0 35 .............................. CAATCTCAAAAACTCGGTTGCGATCATCGAGCGAT 396927 30 100.0 38 .............................. CGTTTCCCAGCTCGAAAAAGTGGCGCAGAAGCAACAAA 396995 30 100.0 38 .............................. CTATTTCCCCAAGCGTGTGCTGGCACGCTGCAAGCATA 397063 30 100.0 38 .............................. CATTCGATATATGGACGACGTCATTGTACTGCACGAAA 397131 30 100.0 37 .............................. ACCAAACAACTCAACCAATTTTTTAAAACTAATTCCC 397198 30 100.0 36 .............................. ACCGTCTACCCATTCAACAAGAAAGGCTGTTTTTCT 397264 30 100.0 35 .............................. TAAGCGTCTGTCAATGTTTCTTGACGTTCGCTTTC 397329 30 100.0 40 .............................. TCTATGAAACCCTTCGTACCGAAGAGAAACAGCGGTACTA 397399 30 100.0 39 .............................. TGATCGCTCTGGCCGCAGTTAACTTATTAAATTTATCGA 397468 30 100.0 34 .............................. TGAAAATCAGCAGATATTGCAAAAGCTCGAGGAA 397532 30 100.0 36 .............................. CCTCAACCACTTTAAGTGTCTTTTTGAGGTCGCCCC 397598 30 100.0 39 .............................. CGGGTTTTGTTGGTTCCGGAAAGTCGTACAATGCTACAC 397667 30 100.0 38 .............................. AAATTTTTCAATATCCCCCTAATATAGCTCCATCTCCG 397735 30 100.0 38 .............................. AAGATATTGCGATCAACGAGGCGGTCGAACTGGATAAG 397803 30 100.0 40 .............................. ACGGACGAGATGCCCGTAAACAAACCTGTTTTGGCTTTCA 397873 30 100.0 38 .............................. TCTTGTCCGGCTTCGAAGCCGAAAACCAGCCAAGATTC 397941 30 100.0 35 .............................. TCCTTTCAAATTTTGGTCAAAGACACAGACCAAAT 398006 30 100.0 36 .............................. GTGACAAACGGGCTTGCAAGTAAGAAACTAGCGATT 398072 30 100.0 36 .............................. TCTCTAGAAATAGAGGTGAAGGAAATTGCAAAACGT 398138 30 100.0 34 .............................. GCTCGAGATTTTCGATATGGTCAATCAAGTTCAT 398202 30 100.0 36 .............................. ACCTTTAGCTCCTTCGCTGTGTCTCGGAAATTTGTC 398268 30 100.0 37 .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 398335 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 398400 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ======================================== ================== 52 30 99.4 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAGAGGAGGAAGCAAAACGGCGAAACGAGGTGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGCTGGAAAAGGGAATCCAACAAGGAATCGAACAGGGGATAAAGCAAGGGATGAAGCAAGGGATGAAGCAAGGACGCCAAGAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACTGACCGGACTGCCGGTTGAGAAGATCGAACGGGTGAAGGGGTAAGCAGAGCAGACTCTTCGCCGTCGAGCCTCACATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTGCGCAAAAATCCTACAGCCATCACGGCTGAACCATATTGACAGAATTTTTGGAATGTGGTATTCTGGAAACAACCCAAAGGGAAAAAGCTTGATTTGATGCGCATGGTTTGGG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACCGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAACTTCGCGATCTTGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2065908-2064940 **** Predicted by CRISPRDetect 2.4 *** >NC_016593.1 Geobacillus thermoleovorans CCB_US3_UF5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2065907 30 100.0 40 .............................. AAGCGTGGCGCGCCGGCACGTTGGCTCAGACGGCGGCACA 2065837 30 100.0 35 .............................. ACGTCAAATCCAGCTAAACGTTGTAAGTCGTATAA 2065772 30 100.0 39 .............................. TACGAAGTTTCTTTTGAATTTCGATGCTTTCATGCTTGT 2065703 30 100.0 39 .............................. AAATTACATTTTCATCGGGATTCATTCCCTTTTTACACC 2065634 30 100.0 39 .............................. AAATTACATTTTCATCGGGATTCATTCCCTTTTTACACC 2065565 30 100.0 36 .............................. CGTAAATGAAAAATAACGTTCCCATTCTTTTAGTTG 2065499 30 100.0 35 .............................. AGAAGATGCGTTCCATTGAGTCGACTTCGATGTAC 2065434 30 100.0 36 .............................. TCTAGGGCGAAAACCCTTTCCACTTGGCCGCTTACT 2065368 30 100.0 37 .............................. CAAGGCCAATTGCCTGAAAATGCCGAGCCTATTAATC 2065301 30 100.0 35 .............................. TTGAGTGTGACGGTTTGGGACTGAAATATATTTTC 2065236 30 100.0 35 .............................. CCAACTCCATACTTTCATCGGCTCGGTATATTGCA 2065171 30 100.0 39 .............................. TCCAAGTCACCGACAGACCGTACAAGCCGATCCAATTTG 2065102 30 100.0 36 .............................. TATAGCGATCAATGGCCAAAAATACGCGCCGACGCC 2065036 30 100.0 37 .............................. ATCTGTTCAACAGTTAAATCACGTGGTACAGGAATAC 2064969 30 86.7 0 ...............G..G....C....G. | ========== ====== ====== ====== ============================== ======================================== ================== 15 30 99.1 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CCAACCCGTCCCTTTCCGACGATATCGTCCGTGTCGCCCGTTCGCCGATCCGCAAGCTCGGGCCGAACGACCGGCTCATCGCTCCGGCGACGCAATACTGCACACTATTTGGCAGCGTTCCTGCTGGTCTCGCCAAAGGAATTGCCGCGCTGTTGCGCTTTGATGATGCGAGCGATGCAGAAGCCGCCGCTCTGCAACAAACGATCGCACACCACGGAATCGAAGGAGCGCTTCGGCAATACGCGGGGCTTGAGAGTGCGCACCCGCTTGTGGCCGCGGTGAGGGAAGAGTACGGGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATATTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAACAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGAATGGTTTGG # Right flank : GCTATACAGTACGGTACAACTTTTTCTGTCCCCGATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATTGAACACGTTCAAAGAGGGGTGATGGAATGGCTATTGACCACGACCGGTTGTTTAAAGAACTGATCCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTTCCCGACATGCATGAACACATTGATTTCAGCCATTTGTCCTTTCTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGTGAAAAATACCGCGTCGATCTATTAGTCGAGACGAAGCTGAAAGGGGAGGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCCATGACACCCTCCGCGAAGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //