Array 1 433539-434664 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIL01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1775 1775_2_length_613604_cov_56.948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433539 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433600 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433661 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433722 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433783 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433844 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433905 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433966 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 434027 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 434088 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434149 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434210 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434271 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434332 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434393 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434454 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434515 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434576 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434637 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450923-452531 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIL01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1775 1775_2_length_613604_cov_56.948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 450923 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450984 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 451045 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 451106 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 451179 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451240 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451301 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451362 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451423 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451484 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451545 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451606 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451667 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451728 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451789 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451850 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451911 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451972 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 452033 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [452075] 452075 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 452136 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452197 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452258 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452319 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452380 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452441 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452502 29 96.6 0 A............................ | A [452528] ========== ====== ====== ====== ============================= ============================================ ================== 27 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //