Array 1 979774-981266 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081187.1 Salmonella enterica strain sg1722-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979774 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 979835 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 979896 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 979957 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980018 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980079 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980140 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980201 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980262 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980323 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980384 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980445 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980506 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980567 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980628 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980689 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980751 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 980812 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 980873 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 980934 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 980995 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981056 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981117 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981178 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981239 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997398-999362 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081187.1 Salmonella enterica strain sg1722-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 997398 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997459 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997520 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997581 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997642 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 997703 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 997764 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 997826 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 997887 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 997948 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998009 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998070 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998131 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998192 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998253 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998314 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998375 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998436 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998497 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998558 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998619 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998681 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 998784 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 998845 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 998906 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 998967 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999028 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999089 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999150 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999211 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999272 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999333 29 96.6 0 A............................ | A [999359] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //