Array 1 216441-213849 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLY01000004.1 Salmonella enterica subsp. enterica serovar Tees strain CFSAN059891 CFSAN059891_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 216440 29 100.0 32 ............................. GCAGGATCTGAGTAGTAATTACGAAGTGATGG 216379 29 100.0 32 ............................. TTTGCAAAATTTATGTTAATGATTATGAATAC 216318 29 100.0 32 ............................. AATCCCTTCGATTTATCCCGACTCCACACGCG 216257 29 100.0 32 ............................. GGCTACCGAATATTAAAATGGAAGTGTGGGGT 216196 29 100.0 32 ............................. GATGCACTTCCGGGCGATTGGATTATTCGCGG 216135 29 100.0 32 ............................. GCTCACCCCTGAAAGGCTCTGCGGTTGATTGC 216074 29 100.0 32 ............................. GTTATAGATATCCATGCGGGGAAATGCTTGCT 216013 29 100.0 32 ............................. CAATCACAACCCAGAAACCAGCGTATTAGCTC 215952 29 100.0 32 ............................. AATCAACGTGCAGTATCAGTGAGGGGACCGAA 215891 29 100.0 32 ............................. CGATGAGTATGCTAGGGTGATAGGAAGGTTGT 215830 29 100.0 32 ............................. ATTTTCTTTCGGGTGCTAGCGATGGTCTTATA 215769 29 100.0 32 ............................. CCACGCCCAGTCGGAAAATTCCAGACCTCGTT 215708 29 100.0 32 ............................. GGCACGACGCACCTGCTAAAAAATACTACCGC 215647 29 100.0 32 ............................. CGAATCACAAGGTCGCTATGTTGGCCTTTTTA 215586 29 100.0 32 ............................. AGAAGCCCCGTGGCAACAAAAGAGGCGATGGA 215525 29 100.0 32 ............................. CTATGCTCAAGCACCTGGCGGTTATCATGGCC 215464 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGTGAAG 215403 29 100.0 32 ............................. CCTTATTCACGGTGGAGCACTTCGCGCACCGG 215342 29 100.0 32 ............................. CCCAGGGTGCTGGATACAGGAAACAACCGGAT 215281 29 96.6 32 ............................A GTATTTAGCAACTTACACCGACACATCAGGTC 215220 29 100.0 32 ............................. CCGGCAGCGGCTCCGACGCTGGATATATTACG 215159 29 100.0 32 ............................. TTGCGTCTTGCCTTAAAGGAGTTAGAAAGTGG 215098 29 100.0 32 ............................. CCTGTAGCGCTGTTCCATTTCCCCTTCGGGAG 215037 29 100.0 32 ............................. TCGTTGGCCAGCTCGGGCGCCGTAGTTGGTCA 214976 29 100.0 32 ............................. TCTGAAGAGCAGGTCGGAGAAATCGTCTATCA 214915 29 100.0 32 ............................. ACTCACCAATCCCCATCATTACATCCTGCGCG 214854 29 100.0 32 ............................. TTCAGGATGCCAACTGGCGAAGAGTTGCACGT 214793 29 100.0 32 ............................. CCGCTGTCAGTCAGTATCTGAACGGCAAATAC 214732 29 100.0 32 ............................. TATATAGTGCAAATTTTGCGAATTACGCACTG 214671 29 100.0 32 ............................. TTGAACGGGAAACCGCCATCAGGTTCGCCAGC 214610 29 100.0 32 ............................. TCATCCAATCTATTACCTGGAGGGCATCTATC 214549 29 100.0 32 ............................. GCCTCTATCGGCGGATCTGTTACGTCACCGGG 214488 29 100.0 32 ............................. ATAATTCCGACGACGCCACACCCGAGCCATCC 214427 29 100.0 32 ............................. GTGTGAAACCTATGCGCCGCACTGGCGGGGAT 214366 29 100.0 32 ............................. CTACGCGGCGCTTTTTAAGCTTTGCTTCATGC 214305 29 100.0 32 ............................. GACTGTTTTAATCTGTCCGAAACCTTTCCCTG 214244 29 100.0 32 ............................. TTGTGTGGGTACAGCCAGCCAGCGCCAGCAGT 214183 29 100.0 32 ............................. AAGAGGCGTTAATCCGGGTATTCAGAGAATTG 214122 29 100.0 32 ............................. CCACACAAAAGCGCATCAGGAACGTTTCTAGG 214061 29 100.0 32 ............................. ACCGGATCAAAAACGCTGGTCGTGGGTGGCTG 214000 29 100.0 32 ............................. ATACTAACCCTATATTATCCGCAACACTGGAA 213939 29 100.0 32 ............................. GAGCGAGTTCGCTACTACCGTGAGCAAAGCCA 213878 29 96.6 0 ............T................ | A [213851] ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 233451-232690 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLY01000004.1 Salmonella enterica subsp. enterica serovar Tees strain CFSAN059891 CFSAN059891_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 233450 29 100.0 32 ............................. GGGGGCAACTAACAACCAATCGCGACCAAATA 233389 29 100.0 32 ............................. TATGAGGGTGAACTGGTCTGCTACGTGTACGC 233328 29 100.0 32 ............................. CGGCTATTTGTTTAACGCTACTGACCCCGGTA 233267 29 100.0 33 ............................. GTTCCCCGGCAATCTGTTTCAGTGCTACTGGGG 233205 29 100.0 32 ............................. AGCTTGTCGAATACCGATCGCAGCATCCCCGC 233144 29 100.0 32 ............................. TACCGTGTTTGGCTGGGTGCATAAAAAAACAG 233083 29 100.0 32 ............................. TTGGATTACCCGCCAGAGTATCGCCGTTACGG 233022 29 100.0 32 ............................. ATGCGCGAGCTATTCCGGCCACACCGCGTGAA 232961 29 100.0 32 ............................. TTATACGCATTTTTGTAAAAACTGATCCTTCC 232900 29 100.0 32 ............................. TCGTTTGCAGTGTCGTCTAACTGCTTAACGTT 232839 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 232778 29 100.0 32 ............................. CACGAGTGGCAAATTGATTTCGACGAAAAACC 232717 28 79.3 0 .............C.A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //