Array 1 4-1073 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKE01000005.1 Akkermansia muciniphila strain GP25 scaf-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 4 31 100.0 33 ............................... TGAAGGTGTGCCGCAAGCGAAACAATACAATAA 68 31 100.0 34 ............................... TTGAACTTCGCAAGGTCCGAGTTGGTGATACGGG 133 31 100.0 34 ............................... ACGGCATCTGCCTGTTCCCCGTTTTGCCGGAGGA 198 31 100.0 34 ............................... TCTCCATGGCGTTGCCAAGAACATTTTTCAGGAA 263 31 100.0 34 ............................... TAATCATATCCCTACTACAACGGTAGGAATTAGA 328 31 100.0 34 ............................... TGTACTCCAATTTCAGGGAGGATGTAGTTAACGT 393 31 100.0 34 ............................... AATCGCTTTCCCGCCTTTGGCCTTGCTTGCTCGA 458 31 100.0 34 ............................... TTGCAAATATAGATAAAGATTAACTATGAATAAG 523 31 100.0 34 ............................... AAGGAGCTTTTGTTGGTCCTTGTGGAGGGCAAAT 588 31 100.0 34 ............................... ATATCCAGGTGCCCGCGGATGCTCTCCGCCCCGG 653 31 100.0 34 ............................... GAGAAAGTCACCCTTGCGGGTATTTGCTCCGGCT 718 31 100.0 34 ............................... ACAGGCCCGGCGCTGGAACGGCTCATTGACTACC 783 31 100.0 34 ............................... CACAGAGTGGATATTATAGATATAAAAGTATTAG 848 31 100.0 33 ............................... TCTTGTTACCTAAGAGGCCCCTACTATGGCACA 912 31 100.0 34 ............................... CGATAAAAAACAGATACTTTCCGTGTTACTGCAA 977 31 96.8 34 ........T...................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 1042 31 83.9 0 ....T................A..A....TA | G [1055] ========== ====== ====== ====== =============================== ================================== ================== 17 31 98.9 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCAG # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTTAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 222264-222883 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKE01000005.1 Akkermansia muciniphila strain GP25 scaf-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 222264 31 100.0 34 ............................... CAGCATTCCCACCCTATAGCGGGCCGTATGAGGA 222329 31 100.0 35 ............................... AAGGGAAGAAGTGGAAGCGGAACAGGAAAACGCAG 222395 31 100.0 35 ............................... CGTACCTAACATGGGGAAGTTATGCAGATTATAAG 222461 31 100.0 34 ............................... TACCTAAGTTGCTGACGGTGTAGAGCTTTCGCAG 222526 31 100.0 34 ............................... ATCGCTAAGGTATACTATTTTAGTACAGTCATCC 222591 31 100.0 35 ............................... CCACGTGGAACATTTCAGGCGATTACAGTCTTTTT 222657 31 100.0 35 ............................... CTGCTTGCATGTTTATACTGATAAGGATACCACCA 222723 31 100.0 34 ............................... CGCTTGTCCTGCAAAATAGTAATGATTGCAAGGT 222788 31 100.0 34 ............................... CGGAAAGTGACCACGTAATTGAATGTCTTTAATC 222853 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 10 31 100.0 35 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : C # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 177414-181595 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKE01000006.1 Akkermansia muciniphila strain GP25 scaf-6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 177414 31 100.0 34 ............................... ACCGTAATATTCCTCATACGGCCCGCTATAGGGT 177479 31 100.0 34 ............................... TTTTGGATGTGTGTTTCGTCAATAATGTTGCAGG 177544 31 100.0 34 ............................... GTAACGGGCGTAACGGATATTCTGGGGCCATTCT 177609 31 100.0 34 ............................... CGGTGGACAAGAGAGATAAAGCTCTTAATGCTCT 177674 31 100.0 34 ............................... ATGGCGGGCCGTGTATAAAACTCACGAAGAGATT 177739 31 100.0 34 ............................... CGCTTGTCCTGCAAAATAGTAATGATTGCAAGGT 177804 31 100.0 34 ............................... GTCCGGACATGTCCGGGAAAGTATTACCTCAAAT 177869 31 100.0 34 ............................... ACCGTGGATAGAGCGGCGGTTAAAATCTCCTTCC 177934 31 100.0 34 ............................... ATTTACTCTTACAACATTATAACCATAACGGGAG 177999 31 100.0 34 ............................... ACTCACTTCTTTCATTTTCGTATCCCTTTCTAAG 178064 31 100.0 33 ............................... TGGATTGTTCGCCTAATGAACTAGCGAAAATGG 178128 31 100.0 34 ............................... GCACAATGTACAATAATGCAAAGTAGAACGAAAA 178193 31 100.0 34 ............................... TAATCATATCCCTACTAAGCTAGTAGGAATTAGG 178258 31 100.0 34 ............................... AGGTAGCGTCCGCTATAATTACCCTACCGAAGGC 178323 31 100.0 33 ............................... AGTGTATTCCATGGGTAAATTCCTTTACTGATT 178387 31 100.0 34 ............................... TTCGTTCATTGTATATTATGGTTAGGTTTTATTT 178452 31 100.0 34 ............................... CGCCTGATGCGGGACTACGGAAAATACAGCGCAG 178517 31 100.0 34 ............................... CGCGGAATCCGGGGATGCCAGGAACCTGACGGAG 178582 31 100.0 34 ............................... GTGTGGAGTTCATTGCCCCACATGGGGCGACTAA 178647 31 100.0 34 ............................... CAATCGGTTTCCTATAACGTAGGCTACGCGGTCG 178712 31 100.0 34 ............................... AAAGGCGGAGTAGGAGTCAACGTTGGCCAGCTCC 178777 31 100.0 34 ............................... GGGCTCCTTGTCATATCCCTCTATGCAGGTGACG 178842 31 100.0 33 ............................... GACAAGTCCCAGGTGAACCGAGCCCTTGCCATG 178906 31 100.0 34 ............................... CGGGGGAACAATGATGACCGGAGAATCTTGTTGT 178971 31 100.0 34 ............................... CCTACCTCAAGCTCTGGCAGTCCTCCAGCGAAGA 179036 31 100.0 33 ............................... CGTGATATAGAAACTGCAACCGCGCCGGGTCAT 179100 31 100.0 34 ............................... TAATACGGAATACCAGCACAAAATCTGCGTGAAG 179165 31 100.0 34 ............................... GGAGACCAGCCACTGAATGAGGGCTGGGACAAGG 179230 31 100.0 35 ............................... TTCAACGACTTGTCGGACGTGTTGCGAGAGTACAA 179296 31 100.0 34 ............................... CTATTGTGGAATACAAACCAACGGGGGTTAGTAG 179361 31 100.0 33 ............................... CCCTAACAGGAAGCCAGTCAGCCAGGATGATGA 179425 31 100.0 33 ............................... CAAGGCATCAATTACGAGGTAGGCACTGGTCTG 179489 31 100.0 34 ............................... TGTTTCAGGTCCACGTTGGAGTCATAGATGGTAT 179554 31 100.0 34 ............................... TCATTTTCAGCTCGACGGGAACCAATATAGGATT 179619 31 100.0 33 ............................... CTATATTGTAACCACTAAGTGCAAGTTGGTAGA 179683 31 100.0 33 ............................... CGGGTAGGTGAAAAAGTCCCATGTCTTAGGTGC 179747 31 100.0 33 ............................... TGTTCTTCGTAATATTGTGCAAGTCCGCTACCC 179811 31 100.0 34 ............................... GTCGAACAGGGCAAGGTGCAAGTGTTCATCTACC 179876 31 100.0 34 ............................... TCCATGCTGAATTCTACCTTCGGATTGCTGGAAA 179941 31 100.0 34 ............................... CTTTGCTACTCCTGCGGGCAGGAACCCGGCAAGG 180006 31 100.0 33 ............................... TATTGGGTTATAGTCAATCATTTTCTTAGTCAA 180070 31 100.0 34 ............................... CGTTCGTGCTAACCATTGTAAAATCAATCAGTCT 180135 31 100.0 34 ............................... CGTCCGCTTCCACGTCGGCTAAATGAAAGGCGTA 180200 31 100.0 33 ............................... TGCAGCGATTGCCGCAGGGCGAGGTTGTTGGCC 180264 31 100.0 35 ............................... TTTCACGCGCTTCTTCCGGCTTAATATCATAGCAG 180330 31 100.0 34 ............................... TTCCTCCTGTTCCGTTTCTGCGGTTTCCGCCCCT 180395 31 100.0 34 ............................... AACGTCCTGCTCAATATCAGAAAGGCACCCCTTG 180460 31 100.0 35 ............................... AAATGACTAAATTAGTTTTTAACGCATCTGATTCT 180526 31 100.0 33 ............................... ACCTCACCATCGGAAATAATCGTGTCGGTCAGG 180590 31 100.0 33 ............................... CCTCCATCAGATCCTCCACCGTCGCGCTTCCGC 180654 31 100.0 34 ............................... CAGGACCCGGACGGCAGGGATTACCTGTCCACAC 180719 31 100.0 34 ............................... CCCCGCTTTAACCTTTTTACACAACCTGACAATG 180784 31 100.0 36 ............................... CAGAAAAAATCACTCCATCCAGGGAGACGGCGTCCC 180851 31 100.0 34 ............................... CCGGCGCCGCGAGCGGGAAAGGCGTCATTACGCC 180916 31 100.0 34 ............................... TACGAAATCCTTCGCAATAATCCGGTCCGCAGGA 180981 31 100.0 34 ............................... CGGACTGCGCAATAACAATCCTGTAGGTAGCGGA 181046 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 181111 31 100.0 34 ............................... TTGGGAAAGCTGGAGAAGGGTTGGTGACGGTAAA 181176 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 181241 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 181305 31 100.0 35 ............................... TTTTTCCCTCTTGACTTTCGTCCCTTCTTTTTGCG 181371 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 181436 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 181501 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 181565 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 65 31 100.0 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACTCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 152783-154697 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKE01000007.1 Akkermansia muciniphila strain GP25 scaf-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 152783 31 100.0 33 ............................... GACGAAAGTATCAATTCTTCCCGCCTGCTTAAC 152847 31 100.0 33 ............................... CCCCTCCAAAGCAAGTTCTTCCTGCGTTTTCCT 152911 31 100.0 33 ............................... CAGTACCATGAATCCTTGTCGTCAAAGTATGCG 152975 31 100.0 34 ............................... CGCTTGTCCTGCAAAATAGTAATGATTGCAAGGT 153040 31 100.0 34 ............................... GGATTGTTCGCCTAATGAACTAGCGAAAATGGTT 153105 31 100.0 34 ............................... CGGCTAGTCTGGATGCGTAAAAGCCTATTAACTA 153170 31 100.0 34 ............................... GAGAGTTACAGGGCACTTTGCCTGTTTAGTACGC 153235 31 100.0 34 ............................... CTTCGGGGAACAAGGCCAATTTAGCATAGGTGTG 153300 31 100.0 34 ............................... CCGGTTAAAAGCTTGCGTGATTTTATGGCTATCA 153365 31 100.0 34 ............................... CCCTGCGCCCGGTCACCAACAACGACCCGAACAA 153430 31 100.0 34 ............................... AATGACAAAGAAATCGGGACGAGAACCTCCATCC 153495 31 100.0 34 ............................... CTCATACAACCCGGTAGCCTATCAGAGCGAACTC 153560 31 100.0 34 ............................... TGAGAGGCCAGACGGGTGATGAAGCGGCTGTAGG 153625 31 100.0 34 ............................... CGCGTTCTTCGCGCTGAAACTGGCAATCGTAACC 153690 31 100.0 34 ............................... TATCCGCGGTAGCCGTGGTAGCCGTGGGTATCTG 153755 31 100.0 35 ............................... CCAACTTGGGAGTCCGCAAAATCATTTGCCCTCCA 153821 31 100.0 34 ............................... CGTGGATGAGATACGCAAGCTCATGGCCGCCAAG 153886 31 100.0 34 ............................... CATCCGTTCAAATCCGTCCGCGGCATCCGCGTGT 153951 31 100.0 34 ............................... CCTACGTAGTCAGATTAAAGGCTTTAACGGAAGG 154016 31 100.0 33 ............................... CGCCGCCGCGCGTAGGTATCCTCCGCCTGTTCG 154080 31 100.0 35 ............................... ACAACTGATAGTGGTTTTCACCGGGGAACGCGCTT 154146 31 100.0 34 ............................... ATAAGTTGTATGTGGCTAGCTGCTTCAGCGTCAT 154211 31 100.0 35 ............................... TATACGCCGGGTGATGGACCTATAGCTTTCAACCT 154277 31 100.0 34 ............................... GTAACCTACTTCATAGGGAGTAGGAATATGGGGT 154342 31 100.0 34 ............................... AGCGTCAATGTCCATGTCTTCATCATTGTCCCTC 154407 31 100.0 34 ............................... TGTTTGTGGAGACCCTTAGCGGCAAGACCAAAGG 154472 31 100.0 34 ............................... ATTGTATTATGTGGTTAGGTTTATTTATTGTGCC 154537 31 100.0 34 ............................... CGGATTGGATTCAGGCCGTCCCGTAGGGGAAGCT 154602 31 100.0 34 ............................... TGGCGCGTTTCGGTCAGGTTGATCTGGTAGCGCA 154667 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 30 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGTAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : T # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 246622-250221 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKE01000001.1 Akkermansia muciniphila strain GP25 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 246622 31 100.0 33 ............................... CACGGAGGTGGGTTGAGAGAACTGGCTCTTGTC 246686 31 100.0 34 ............................... GACGACGTGCTTAGTGCCGCCACCAAGATTGCTA 246751 31 100.0 33 ............................... TGACCAAGCATGAACATCTTCTTTACACCGCGG 246815 31 100.0 34 ............................... ACCGTTAATGGTATTGTTCACCCATTCGGGAGCA 246880 31 100.0 34 ............................... TGGACAATAGCGGTAATCTTAGCGTTAGCCTTAT 246945 31 100.0 34 ............................... ATGTCTCCATGCCGCATGGCCCAGGCACCATCCC 247010 31 100.0 33 ............................... GAAGGTCTTTAGCGATTGCTTTGCCATCTAAGA 247074 31 100.0 34 ............................... ATCATAGAGTTATCTTGCTTGTGTCAAGTTTGTT 247139 31 100.0 34 ............................... TATTTGTTAAGGTTATAGGGGAGATTGAAAAATG 247204 31 100.0 33 ............................... GGTGAAAGAATGGGGGTTACAAGCTCTCCTTCT 247268 31 100.0 34 ............................... AAACTACGGAACTGATTGCGTAACAGTTTGAGCA 247333 31 100.0 34 ............................... AGGCCAGAGGTAGGCACGATGTCAGCGACAGGGG 247398 31 100.0 34 ............................... CACCTGGGCATTACACGGACCAGAGTAGCTGTCA 247463 31 100.0 36 ............................... TCTATCCACGGGGTCCACGTAATCGGCGTAGGACTG 247530 31 100.0 33 ............................... TACAACTTCGCGGCTGACTTGGAAGCCTCGCGG 247594 31 100.0 34 ............................... ATAAGCTGAAATGGAACGGCTATGTAGTCGCCTT 247659 31 100.0 34 ............................... CCCCCATGAATGCCTCTATAATTGCCCCGGTACG 247724 31 100.0 33 ............................... TATCAGGAGAGTAATTTCTCCAATACATTTCTG 247788 31 100.0 34 ............................... CCATGGTCAGCACCTTGTTGGTAATCTCATGCTG 247853 31 100.0 34 ............................... TCCACCACGCCGGAGTTTCTCTTGTACATGGAGA 247918 31 100.0 34 ............................... CCCTGTTCACCAACGGCGAGATAGGTACGGTGCA 247983 31 100.0 34 ............................... AATGTCGTAGCCGCAGGCGGTAGCATATCCTATG 248048 31 100.0 35 ............................... GTTGTCATGGTTGTGGGTGCGATTATAGGACCGGG 248114 31 100.0 34 ............................... CGGCTTTTTCCACCTTGTCCAGCACGGAGGGCAT 248179 31 100.0 34 ............................... CATTCCGTCCTCCATTTTTGGAGGGGATGAATTG 248244 31 100.0 34 ............................... CCGTTAAAATCCTGCGTGATTTTATGGCTATCAG 248309 31 100.0 33 ............................... TCTTACGCTTCCACTTCTTTCCGTGAAAATTTT 248373 31 100.0 35 ............................... AATGCAAGTCTTTATCTCTTCGGGCCGAACGTTGA 248439 31 100.0 35 ............................... TCCCGTATAGATAGCTTGAACGACAATCGGAACAT 248505 31 100.0 33 ............................... TGATAATAAAAAGTATAAATCAGGTTATGACGC 248569 31 100.0 34 ............................... CAGGTCGGCGAATCCCAGCGGGCGGACCGCGTCA 248634 31 100.0 34 ............................... CCCGTCCAAACTGTACTGCGCTACTGGTCTAACT 248699 31 100.0 33 ............................... TTTTGCCAAGAGGCAATCCCTGACCATGCGGGA 248763 31 100.0 33 ............................... GCGTTCGCGGCTGTTGGTAGCCTGCCTGGACGT 248827 31 100.0 34 ............................... TTTGCTTTTCGCCGTCGTCATCCAGTCCGTCAGC 248892 31 100.0 34 ............................... GTGAGTGATCGCGTGTTTCGCTCGAATGATTCTA 248957 31 100.0 33 ............................... TATTCGCTTTTGATTTTCATTTATGTATTTCCC 249021 31 100.0 34 ............................... GCCCTGGTGGCATGAATAGCTTAAACACTATACA 249086 31 100.0 34 ............................... CCTGCCCCCACAATCTGCATAACTTCCTCATGTT 249151 31 100.0 34 ............................... GTTCTTCGCTCATAGCAAAAGTCTGATTTTTAAT 249216 31 100.0 34 ............................... CGGATGAAGCGTTTGATGCAATCGGGGATGATGC 249281 31 100.0 34 ............................... TATAATCATTAGCAATTAATCAAAAAAACAAAAG 249346 31 100.0 33 ............................... TATGAGAAACGTTGAATTATGCGTGGTTGCATG 249410 31 100.0 33 ............................... TGTTCGCACTAGCTGCGTGTGCCTCCTACATTA 249474 31 100.0 35 ............................... TCTTCCCGGAAAACCCGTAACCTCAACTCTATCAG 249540 31 100.0 35 ............................... ACGTTATTCATTGTTCGTCAAGTATTTGTAGGCCT 249606 31 100.0 33 ............................... TGTTTCTTCGTAAATCAAGATATGCAGTTTACT 249670 31 100.0 34 ............................... GTGTGCTCCCTGCTAAATTCTACCTTTGGATTGC 249735 31 100.0 34 ............................... TTGCTTGTTTCACCGTAGTATTCTTCATACGGCC 249800 31 100.0 34 ............................... CCGGTACTGTACAGGGGTGATAAAGGTCCACCTG 249865 31 100.0 34 ............................... TATATAAAGATATTCTTCCACAAAGTGGTTGTTA 249930 31 100.0 33 ............................... CGTTTTGTCCCACACAACTACCCCCCGCCAAGT 249994 31 96.8 34 ...................A........... CCGTCGTCGTCCAGTCCGTCGGCCCTAAGTGGGG 250059 31 100.0 34 ............................... TCACGCTCCCCGTGTATCTCCGCCCGCAGCAGGG 250124 31 100.0 34 ............................... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 250189 31 83.9 0 ........C....G........G....C..G | G,C [250214,250217] ========== ====== ====== ====== =============================== ==================================== ================== 56 31 99.7 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : ATGGAGCGCTGCTGGAAGAATCCGGAGGCTCGGGAGCCGAAGAACTCTGCCAGGAGCTGGAAGACGAACTGCTCGAGGAGGAAGAGCTCGAACTGCTGCTGGGCTTGGGGTCAAACTCAAACGAATCTCCTCCCCCTGCCGAGGAACTGCTAGACGAGTTCCCTTCCTCCTCTTCCTGGTACAGGTTGACCAGGGTTAGCACGGTTTCTCCCTCCTTGCCGGCAGGCGTGTTTTCCGCCAGCAGGTAATAATCCAGGTCGGGCTCGCCTTCCTTGTCGCATATCAGGGCAATGCAGAACTCGGCTTCCGACCCCTGGTCGGGCTGGTGTTGATGGACGATATGGCACCAGTAGTATCCCTGTTCGAACTGGATCTGGCGACAGAGAGGAGCGGAAGATCCGGCCTCCGTGGAGAGTTCCATATCCTTGGCGNCCGTCGCACCTTCACAGGTGCGTGAATTGAAACCAAAATTTCCCCCATACAGCGGGCCGTATGAGGAA # Right flank : GGGACACGTTTTGGAAGGTTGTCACACTTGCATGGAAATGTAGATGTGAACATCAAACACCAGCCTTACTAAATGGCATTTCATTAAGTATAGGTTGCTGAGGGAGAATGGACTTGGAGCCGACTTTCTTGGAGTAATAAAGAAAAATAATAGTGAAGCTTGCATCTTTAAAAAGGTAGTTTGTGATATAAATAAACCTTCTCTTCAAGAAGAATTTGTTGTTGAAGTATGGCAATAGAATGTTAGGTTTCCGTTGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTTATGAAATTATCAATGATTCAGCCGTGGTTTATAAAGACAGGATTCCTACCGACAGATGGAAGGAACCTTACATGCCCGTGGATGAATTAAAGGAGCAGATCAGAGATGGCGTGGTGTTCTATTGTTTTGAAGATAAGGGATGCCTTCTTGGCGTCATGGGGATTCAGGACCGGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 259223-261730 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKE01000001.1 Akkermansia muciniphila strain GP25 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 259223 33 100.0 34 ................................. GGATATATTTTCTAGCTTACCCCTTAAGTCTTCG 259290 33 100.0 35 ................................. TCCATATCTGGCACACAAGTAAGTTCTTCCAAACT 259358 33 100.0 33 ................................. AGTTGTTTAGGGGGGGGGGGTTGTCAATACCTT 259424 33 100.0 35 ................................. GCCATCCAGTGTGCCCTCAATAATCACTTTGCCCT 259492 33 100.0 35 ................................. AATATAGGCGATAACAGCCATTTCGTCTTCCGCAA 259560 33 100.0 35 ................................. CGTTATGCTGGTTCCATTGTGAATTTTTATTGCTA 259628 33 100.0 34 ................................. CACGTGGAACAATTTCATAACTCCTTAACAGTGA 259695 33 100.0 34 ................................. CGATAGGTACGACGGATAGCTCCTGGCGTAACGG 259762 33 100.0 34 ................................. ACGTCCTGGCCGTTATTGCCATTGCCGTTGACAA 259829 33 100.0 33 ................................. GGATTGAACTTAAACGCGATAGCATCCTTCGGA 259895 33 100.0 34 ................................. CGCTTCATCCACGAATCCATGGCCCCGGCGATAC 259962 33 100.0 33 ................................. CTCATACAACCCGGTAGCCTATCAGAGCGAACT 260028 33 100.0 33 ................................. TCATCCTCCTGTGGGCCTACCGCGAACTGAACG 260094 33 100.0 33 ................................. CGGTCGATGATTTCATTGACCCACACAGGCCCC 260160 33 100.0 33 ................................. CATGTTTCGGGCAATGGACTTGGCCAAGGCACC 260226 33 100.0 34 ................................. CATGAACCCGGTGCCTCCGGTTACGTCAACAGCA 260293 33 100.0 34 ................................. ATGACCGGATAAGTTTAATTGTCGGAGCTTTGCT 260360 33 100.0 34 ................................. ATTTTCAATCCCCACAGCATCACCTTGAGGTTGG 260427 33 100.0 33 ................................. CCATGTCCTTGGTGGTCAGGGCCTGATACTCCG 260493 33 100.0 34 ................................. CCCAGCGCGAAGTGCATTTAGAATCTTCTCCTGC 260560 33 100.0 34 ................................. ACAAAAATGATGGAAAATAATATTGACAAGCCAG 260627 33 100.0 33 ................................. CATAGCTCACCCCGGAGGTCGCGTCAACGGCTT 260693 33 100.0 34 ................................. CCATGGTCAGCACCTTGTTGGTAATCTCATGCTG 260760 33 100.0 34 ................................. CTATATTGTAACCACTAAGTGCAAGTTGGTAGAG 260827 33 100.0 34 ................................. TTCTTTTTCCTTTGCATTGTAGTAAGTCGTTGAT 260894 33 100.0 35 ................................. CCTAAAAATGGACATGTGGAGTCCACCCGCATTGT 260962 33 100.0 34 ................................. CAAAAATATGGCAAGGTTCAGATTCCCCTTCGAG 261029 33 100.0 34 ................................. CGCCTCAAAGCGGAGGGGGACGTCCCCGGTGGGT 261096 33 100.0 34 ................................. ATAATTACCGTCCCCATCACATTTGACATTGAGC 261163 33 100.0 35 ................................. TTCTTCCAATCCGGCTCTGGCCCGGTTCCAGCGTT 261231 33 100.0 34 ................................. TGTGACTATTTGCTTATATATGAGATAGTCGGTT 261298 33 100.0 34 ................................. TTTACGATGGATAATAGTGAGTATTGTGTATTAA 261365 33 100.0 34 ................................. TCATGACACAAGGCAGTCACCTTAGGCTTTTCTG 261432 33 100.0 34 ................................. CAATGAATCCGCACAGGCGGCGGCCTCCCGGAAG 261499 33 100.0 33 ................................. ATCATGATGGATAGTAAGCAGGGCAAGAAAGCC 261565 33 100.0 33 ................................. TGGATATAGGTTTCGTCGATGACATTGCAGGTC 261631 33 100.0 34 ................................. CGTGAGGATCGCCAGCTTTTCGGCGTCGTTTTTG 261698 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 38 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CAGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 972927-972702 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKE01000001.1 Akkermansia muciniphila strain GP25 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 972926 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 972862 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 972797 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 972732 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ================================== ================== 4 31 97.6 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : | # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //