Array 1 150177-150626 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFKY01000001.1 [Clostridium] spiroforme strain An158 An158_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 150177 29 100.0 36 ............................. TTTTAAGGTTTCTCTTGCTTTACCGCTTGCAATCTC 150242 29 100.0 36 ............................. TAATGCAATAAATTGTTCACTAGCTTTGAGGTCAGG 150307 29 100.0 36 ............................. AAACAATAAAGATTATATCTTCTTTATTGGAGATAG 150372 29 100.0 45 ............................. ATAATTTATGACTGATATGGCGTTTTTGTTGTCATAAAGATGAGT 150446 29 100.0 51 ............................. CTATATGAAACTCCATCCATGTTTCACCGCCAAGAATGTGGTGTGGAAAAG 150526 29 96.6 40 ....................G........ TACATCAAATGAGTTGCAACTGTTTTGCTTTCTACCATAG 150595 29 89.7 0 ....................G.A.....T | A,GA [150614,150617] ========== ====== ====== ====== ============================= =================================================== ================== 7 29 98.0 41 GTTGTACCTTAACTTAGAGTAATTGTTAC # Left flank : ATTCAAAAGCTTATACGATGTAACTAATGCAAATCAAAATAGTACATTTAGTAAATATGCAGCAATTATGGCAAGCATAGCTTTAGTTTTTACGTCTATAACATTTATATATGATATGTTTGAGATACCACAAGATATATGCATTAGAGTGAGAACAGTGGTAATAGCTATTATTATAATTGTTGCAATTATATGGTATGTTAGAAATAAATACAGACGAAATAAATAGTTATATGCGGTCAATCTAAACCTAAGATATATCAAGGGTTTTAAAGGAAAATGAACAATAAAATGGAGTAAAACTCAACAAAAAATAGTTAATTTTGCGGTTAATCTTTTTTACAAAAAAGAACAAATCTTTAAAATTGCTCAAACCTGTTGATATATCTACTGTTTAGATGATTTAACATAAAAGAGACTGACCGCAAAAAGATGATGAATATTAGTTTTTAAGTCATAGAAAACATTATTTACTAATAAAAAATGGCTTAAATATAGTA # Right flank : TGTTAATTTATCTTTTATAATTTATTTGTGTTTCAATATAGAAAATTTATATAAGTGGGTGATAGGATGTTGGAGGAAATATTTTCTAATAAGGAATTATTAGATGAGGCGTATAAAGTTATTCAAAGTAGAAAGTTATCAGCTGGTGTCGATGGAATAGCTAGTGATGAGTTATTTGATTATTTGAAATTAAATTGGGAAAGTGTTTATAAAACAATAGTTTCAGGCAATTATTATCCAAAGTTAGTTATTGAAAATGAGATTGTTTCTAAAAAGGGAAAGAAAAGAAAGATATATAAGTATTGTGTTATTGATGTTTATATTCAAAAGGTTATTTCTTTGTTTTTGCATGAGTATTTTAGTGATAAGTTTATTGGTAATTTGTATAGTTTTAAGAAGAATGTTGGAATTTTGGATTTATTAAAGGAAGCGGTGAGATGTATAAGTGATGGATGTGAATATGTTGTTGAGGTTGATATTAGGAGTTATTTTGAAAATAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACCTTAACTTAGAGTAATTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 154444-154907 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFKY01000001.1 [Clostridium] spiroforme strain An158 An158_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 154444 29 100.0 40 ............................. TAATTGTAGGTACTTCTTTTGCGGATTCATCAGCCTCAAA 154513 29 100.0 44 ............................. TATCTGTGATTCAAATTCTAGCTGTAGATTTTCAGCTTCATTTG 154586 29 100.0 40 ............................. CTTTTTCTGCATAGTTTCTTGCATTTTGGTTTACGTTCAT 154655 29 100.0 43 ............................. AATCCCTTTGACCTGATTTGCGGGGAGTTTTCCAACCGTGCAG 154727 29 100.0 41 ............................. ATATCAACGGGATTTGTAACGTGCTTCCACACATAATCCCC 154797 29 100.0 54 ............................. TAGGCTATTTTAGCACAATAGAAATGACCTATATCCACAGGATTTGTAACGTGC 154880 28 75.9 0 ..................C.-...ACGCA | ========== ====== ====== ====== ============================= ====================================================== ================== 7 29 96.6 44 GTTGTACCTTAACTTAGAGTAATTGTTAC # Left flank : TTATATTACAGGATGGCAAGGGATATATGAATTAAGTGGTAAAAGGGAATATTTAGAATTTTTATATTATGTTGGAATTGGAGAACGAAATTCTCAAGGGTTTGGTATGTTTGAAATTATTGAATAGTTTGAAGTTTATAATGATAAAAAGTGAAGAATTATTTGTTGTAATAGTAGATTAAAGTATTTAAATATTATAGAATAAATTTAGAAACTTAATTATTTATCAAAATTTGCGGTCAATCTAAACCTAAGGTATATCAAGGACTTTAAAGGAAAATGAGCTATAAAATCAAATAAAAATCAATGAAATATAGTCAATTTTGCGGTTAATCTTTTTTACAAAAAAGAATAAATTTTTAAAATTGCTCAAACCCGTTGATATATCTACTGTTTAGACGATTTAACATAAAAGAGACTGACCGCAAAAAGATGATAAATATCAATATTTTAGACATAAAAAACACGATTTACTAATAAAAAAAGGCTAAAATACAGTA # Right flank : ATTGTGTGTGATATGATAAAAGATTAATTAGCTATGGTGTTGTATGATATTTATTTGTGGAAGTAATAAAGAGCATAATAAAAAAGCATAGGTGAGATTCACTTATGCTTTTTGATAAATTTTTTAAGATATTCATAACTGTATTCGAAGTCATAACAGCATTCTTCTAAAGTTATTAAGTCGATTAATGAATAGAATTCATTTCTAAGAGTTGGTTCTAATATGATGAGGTTTACTGAAGAATCTTCGTTTTTACCTCCTAGTGTGATATTAATATTTTTAATATCGTTAAAGGTTAAGCTGAATTTATTTGGTAAGTTAAATTTTTCTTCTTTGATTAAATAAAAACGGAAGGTTGGATAACTGTTGGCTATATTAATAGTTCTGTTTAAAATACGAATAACATCTGTTTTAGAGAAGGGGTTGAGAAATTGGTTGGGAATTTCACTTACTTTTCCAGTATCGTAAAAAGACTGTAAGCCAGATTTGGTGAAGTAAAA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACCTTAACTTAGAGTAATTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1437-306 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFKY01000010.1 [Clostridium] spiroforme strain An158 An158_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 1436 31 100.0 37 ............................... ATATAAATCAATAAACATATAAGATAAAGCGAATTTA 1368 31 100.0 39 ............................... TTTAGTTAATTTTATATCTCCGTAAAAAATAACACTCCA 1298 31 100.0 38 ............................... TTTAGATGTTGCCATAATTTTTTACCTTACCTTTCTTT 1229 31 100.0 41 ............................... TCAATTACTTTTATTTCTGATTCTCTCTTTAGATATCCACC 1157 31 100.0 36 ............................... CATATGTTTCATAAAAATTAACTAGCTGTGGAATTG 1090 31 100.0 36 ............................... GTTCAAGTTTATTATTGTCAAGTTCTAGCGGATTAC 1023 31 100.0 37 ............................... GTAAATTCTTTACTTGCTAATTTTTCCTGTTTGTTAA 955 31 100.0 36 ............................... GCATGTATGAAGATTAATATTGCCACGAATAATTTT 888 31 100.0 40 ............................... CTTTTTCTAAGTTATGATATAACTTGTATTCTTCGTTTTT 817 31 100.0 42 ............................... CAAGCATTATTTTTATCCGTAATATTTTGCATTTCATTAAAA 744 31 100.0 41 ............................... GCTGTACTGTTTTAGCATTTCTTATTTCATTTTGATAGTTT 672 31 100.0 37 ............................... TCTTAACTTTCTGCCCTTTGCTGTAAATATCAATGCT 604 31 100.0 34 ............................... TGAAATACTTGATATAATTCGACTGCAATATTAT 539 31 100.0 36 ............................... ATATGTACTCATATCTCCCATTTTCTTTTCTATTTC 472 31 96.8 38 .........G..................... TCGGTATACCTAGTGCTTTATCGTAAAGTTTATAATAC 403 31 100.0 35 ............................... GCACATAATGTCCAGCTCCCTTCCTAATTCGTTAT 337 31 87.1 0 ......................A.....TAT | G [309] ========== ====== ====== ====== =============================== ========================================== ================== 17 31 99.1 38 ATTAGTTATTGTTCTTATAAAGGATTAACGC # Left flank : ATAATTACAAGAGAAGTTTATAAATTATCTAATTATATTGAAGGAAAAACTGATGAATATAAACCATATATAATGGAGTGGTAAAATGTATGTTATTTGCACATATGATATAACAGAAAAAAGATGCCCTAAAGTAATGAAAGTATTAAGAAGATATATGTTTCATGTTCAAAAATCTGTTTTTGAAGGTGAATTAACACCCGCAAAATTTAATGAGCTTAAAATAAAATTAAATAAAATAATTGAATCAGATGATAGTGTTTTATTCTATTTTGTTTATGAAAATAAAAAAATAAAAAAAGATTTTCTTGGTAAAGAACCAAAACCCACGAATATTATTATTTAGTTTATCGACTATCACCATTTTATCAAGTGAAAATTAATTAATATATTATTAATTTTTGTTTGATAGTCGATAAAATGATAAGTTTTAATACTTGAATTTATTATAAATACAAAGTATTATTAGAATGAATTTAGTATAATTCTAAATTCATTCT # Right flank : TTAATTGTTATAAATTTCTAAGTTACTAAATTTAAGAAAATACGTTAAATAAAAACAAGTCTTATTTAAATTTATGACGGCGCTTTAATTTAAACTGGGGTAAACGATATCCTTTAATTTAAGTTGGGGTTTTCGATTTCTCCTTTAATTTTTATTTGGGGTCATCTGTTGATGACTCTTTTTATATAAAAAATCCTTTCATGATATGATTTGATTGTTCATGTCAATCTATCAGGAAAGGAGTAATATCATGTACGATGATATCATCAACATTTTAAACCTTAATCATTCTGATGTACAGTCTTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGTTATTGTTCTTATAAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 7678-8811 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFKY01000017.1 [Clostridium] spiroforme strain An158 An158_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 7678 33 100.0 35 ................................. TTGTTTTGCTTTAATGTCGATTACTTTTTTAATAT 7746 33 100.0 35 ................................. ATTTAATAATTTTCTTTGTTTCTTGCTAAATGGTT 7814 33 100.0 36 ................................. ATGGAATTAAAACAGCTACACCATTTATAATTGCTT 7883 33 100.0 34 ................................. CTGCAAGAGTAACGCTATTTGACGATGATATATA 7950 33 100.0 37 ................................. AGTGACAAAATTGAAAAATTAGCTTTTATTTTTGATG 8020 33 100.0 37 ................................. TTAAATAGCCCTCTCTTATATCTTCAACTCTTAAAAC 8090 33 100.0 38 ................................. TATTTAGAAATCTTAATTTAGCCAAATAATTGACTTTT 8161 33 100.0 37 ................................. ACTTTTAAATCTTTAAATTCGTAAGGTTCGATAGATA 8231 33 100.0 35 ................................. ACATTTATTTCTTGTTTCGTTGCTTATTTCAAAGC 8299 33 100.0 36 ................................. AGCTTTGTTAACTAACTCACTTTCATATAAATTGCC 8368 33 100.0 36 ................................. TGAGAAGCACTAGAACCACTTACAGAATTACCACTA 8437 33 100.0 36 ................................. TGCTGATAACTGTGTTTATATCTTGCACAACAAAGA 8506 33 100.0 35 ................................. GGGGTATATGTTGGGACAAATTATCATCCAATTCA 8574 33 100.0 35 ................................. TTGCCTATGTTCTCTATACCTGGTCTTACTAGAAT 8642 33 100.0 37 ................................. CCTCTAAATAATTAACATTTTTTATAAGCTTACGTGG 8712 33 100.0 34 ................................. CCCACTCGCTGTTAGCTGAATCAAGATAAGTAAC 8779 33 87.9 0 .............................GTTA | ========== ====== ====== ====== ================================= ====================================== ================== 17 33 99.3 36 GTTTATAATCTGATCATTATATGAAATGTAAAT # Left flank : TCCCCATGAGATATTGCATGCTATTTGTTTTAAAGAGGATGTATATTTATATACAAATTTAGCACAAGGAATGTTATTTGTAACCGGAGTTGAGTCGATGAGTAAATCAAGGTATGTTTTTATGTCGTTATTACCAAATATTGTTTTTGGTTTGGTTCCTTATATTATTGGATTAATATTTCCAAATTTGATTTTCTTTGTTGTGTTTGGAATCATTTCAATTAGTATGGGAACAGGAGATTATTATAATACATATAATGCTATAACCCAGATGCCAAAAGGAGCAAAAACATATTTGTATCAATTTAATTCTTATTGGTACATGCCATAATTTAAATAAACCTTCAGTCGATCTTAATTGTGTAAAAACATAGGGAGTACGACAGAATAAATTTAGCAAATAAACAAAATACACATTGTATTTATACAATTAATATGATAATTTAAAGATATAGAGATAATTTAAGATAATTATTTATTTAATTAATACCTGTTAACGG # Right flank : AGACTAAATTGGATATTATAGGAGAATTATTATAATTTAGTAAAAGTGGGATAATCTAAAATAGTAAGAAATAGAAGAATTTATAGTACTAAATTAAAAACTTGTAGAGTTGTAGTAAACCTAGAGCTGAGTTAGTTTGTGAATATGAATTAATTCTTTTTACTTTATTTTCATAGATTAATAAATATGATCTTAACTAATTCATTAAATATTGAAAAAAATTATAGTAATGCTCAAAAAGAACTTAATATTATTTAAAAATAAAGGGCGCTATAAAATTTCATGGGGATTTGAAACAAAAAATTTCAATTTCTCCCTTTAAAATATTATGGGGAGAATGTAGTATCTGGCTGCATTCTCCTCCTTTATTTTTTCTTAATCAAATTCATCTGTTTCTTCATCAAATGATGTTTCTAGATCATCTGATTTTATCTTTATTGAATCATTGTATTCTATATTCAAATCATATTTTTCATATTTGTTTTGAGAGTACAGTATTC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAATCTGATCATTATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //