Array 1 491-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZLA01000006.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal617 sal617_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 490 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 429 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 368 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 307 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 246 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 185 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 124 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 62 29 100.0 6 ............................. AAAACC Deletion [28] 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.2 29 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : C # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53-263 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZLA01000082.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal617 sal617_contig_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 114 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 175 29 100.0 32 ............................. AAAACGGCCTCGAATTGGCTGGGAACAAACTC 236 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGTCAGCGGGGATAAACCGGAAGGATTACCACCCCGGCAGCGCTCACCCGTG # Right flank : | # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 447-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZLA01000075.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal617 sal617_contig_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 446 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 385 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 324 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 263 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 202 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 141 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCCATCAGGCCGGATGCCTTCTTTCGTATGCCA # Right flank : GGTCTGACCAGTGGCGTGGGGGGATTGCAATTTGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //