Array 1 152748-153244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 152748 30 100.0 34 .............................. CCATTTGTGTTAATAATGAAATGAATTTCATCAT 152812 30 100.0 35 .............................. AAGATGTTATAAAAAGTAGTGATTGGAACTATTTA 152877 30 100.0 37 .............................. ATTAGGTAAAGGTTCTGGAAAATCTACTATGTGTTGT 152944 30 100.0 36 .............................. CATAAATCAATAACAATTGAAGTATTTTCATCTATT 153010 30 100.0 38 .............................. TTTTTTATAGTTTGCTCATATTTTTGTGCTTTCTTGCT 153078 30 100.0 43 .............................. TCCTTCTCAATAACATAAACGTGCTTAATCTTGCCAGCTTCTT 153151 30 100.0 34 .............................. ATCTCTATACAGACTGAAAATGGATACATAACAA 153215 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 8 30 100.0 37 GTTAAAATCAGACCGTTACGGTATGGAAAC # Left flank : AAGTGGGGCTGAAAGAAGTGAAACTCAATCTTGGATATTCTAATAAAGCAAAACCCTATGATTTCGACACTTCAATCTATTAAGTTACATCTCTTAGAGGTAATTGATATTTCATATCCAAATATTCAAATGGCATTTATCACGTGGAAATTCTTTTCTTTTTAATTTAAAGCTTTTTAAAAACTTATTTTTCAATTTTAAGAATTTTTATCGAATTTCTAAGGGTAATTTATTTTGATAATTTTAAGTATTTAAATTAATTAAATTATAGAGATTTTTAAAAGATTTTAAATAATTATTTTTAAATCAAAATTTCCCCAATAAATATTAAAGATTAAAAAATTTTAAAACTTTTTAAGATAGAAAATTAGAAAATAAAATCAAATTAAAAACTTCAGGGGTTTATAAATAAATGAGATAATCTACCCTTCGAAAATTATGGTATGAAAAAGCTTAAATATTAGAAGAGATAACATACAAAATGAGCAAAATATTGCCCT # Right flank : CCAAACTTTGCAATTGATAATCTGGACATTTTGGGGTTGTAAGTCCCCAATGGAAACTTTTTTATATTATCTATTAAATTATGTTTATTATGGGTTTAATGAGGTGTATTATTGCTTTATTTATGGGCAATAATAACTTAAAATGTATATCAAAACTACAAAACCTCTTTTTTGGTGTTTTTTATGTTGATTGTTGATGTTAATCATGGGGCTTTGCAATTGGCTGAGGAGTATTTAAATCTTGGTTATGATGTTGATGTATGGGATATTTATCAAAAAATAAAAAAATCAGATGATTTTAAAATTAAATATAAAAAATTAAAAGAAAAATTTGGAAATAGATTGAATTTATTTTTTGAACAACCAGATTTTGAAAAATATGATAGAATTATAGCTCCAATCCACTGCCCAATAGATGTTAATTTTATCCCATTTACAGATGCTGTGTCTGAAATATTAAAGGAGAAATTTGGAGATATCTATAAAAAAATAATAAATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTACGGTATGGAAAC # Alternate repeat : AGTTAAAATCAGACCGTTACGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 161020-160297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================================================================================================================================================================================== ================== 161019 30 100.0 36 .............................. ACAGATTTTGCTTTAATTTCAAGACATACTAACACA 160953 30 100.0 36 .............................. TTTTTTTATTAAATATTTTCTTTTTATTTTTAAATT 160887 30 100.0 52 .............................. AATGATACTACAAAATTATGGTATGATTTATCATCAAACACTGTTAAAATTT 160805 30 100.0 36 .............................. CTAATTATTCTATATGCCATTTTTATCACCATTTTA 160739 30 100.0 36 .............................. ATGGAGGACGACTACAATAGATTTACAGACGATGAG 160673 30 100.0 39 .............................. ACCTATAAATTATACAAGTATCAATTGCTTAGGAATGTT 160604 30 100.0 248 .............................. ATAATACACATGTAAAAATATGGGGGAGTATCCCAATAGAGGGGGCTTTGCCCCCTCTATGGATTAAAAGAGATTATGTGGGGCTGAAAGCCCCACCTTAATCTATTCCGTGTATCCGCAACCATTAGGGGCTACGCCCCTATTGAGATACCTCAGCAATTCCAAGTTACACCTCCGAGCGTAAGCGAGGAGGTGTTAGATTTTGGTGAAGCTTTTTCTAAAAGGTTCATAACAATAGGGCGGAGCCC 160326 30 80.0 0 TA.GG...T....T................ | ========== ====== ====== ====== ============================== ======================================================================================================================================================================================================================================================== ================== 8 30 97.5 69 GTTAAAATCAGACCGTTTCGGTATGGAAAC # Left flank : TAATAATTATATTAAGTAGCTAATAATTCTGAGGTTATATTTAAACCATAGGGCTACCGCCCTATTGGTATACCCGGGATGCATTGCCTCGCTACGCTCGGCAATGCCTCTTAGAATTTAAATATTCAAATGACATTTATCACGTGGAAAACTTTTTATTTTTAAAATAAAGCTTTTTAAGAGCTTATTTTTTGATTTTAAAGATTTTTAGAGAATTTCGAAGGGTAGTTTATTTTAATTATTTTAAGTATTTAAATTAATTAAATTATAGAGATTTTTAAGAGATTTTAAATAATTACTTTCAAATCAAAATTTCCCAAATAAATATTTGTATTTATAAAATTTTAAAACTTTTTAAGATAGAAAATTAGAAAATAAAATCAAATTAAAAACTTCTGGGGTTTATAAATAAAAGGGGTTATTAACCCTTCGAAAATTATGGTATGAAAAAGCTTAAATATTAGAAGAGATAACATACGAAATGAGCAAAATATTGCCCT # Right flank : TTTTTAATCTCAGACTGCAGTTAAAACCAGACCACCTAGAGATAAAAATAAGGAAAAATAACATAATATTTAGGGCAATTTTTGATAATCAAATAAAACAATCTCTTTTTATGTCATAATATCTAAATAATTTAATGTATCTACTTCAAAAGGTAAAATATTCATAGTTTTTTGTAAAAAACTATAATTCCTTCATAAGTCTTTTAATTTTAAATTTAAGATAAGAAATTCCTTATTTTCTTTAAAAGACCAATTTCCTTTATCAAAATATTCGCCTCGAAAAGGTAAAGTTTTCTTAAAATCTATTATAGTTATGTTGATATAAGATACTCAAGTTTTTTATATAAAGTTTGTCCAAACTATACACAAAAAATTAGTTTTTTGCAAAAGTTATTAAAATTAAAATGGAAGATTTGAATGCCTTCCCAAAGGAAGGCGTCATATATACCTTATGTATTCCAAAATGTTCGTAAAAAACTAATGATTGGGGATAGAATGCC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 288530-287107 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 288529 30 96.7 38 .................T............ AAGGATATGCCACCAGCAGTAAAAGATACATTAAAATT 288461 30 100.0 42 .............................. TAAGATATATCCCAAATATTAGTAATATCAAATTCTACATTG 288389 30 100.0 34 .............................. ACAATTATGTGAATAAACTCCAGAAACATCAAAA 288325 30 100.0 44 .............................. TCTAAATATTCTTTTTTCTGAAGGTGTTGATATTCGTCAATCTT 288251 30 100.0 42 .............................. CAAGAATTATTTAAAATTTACGAAACAATAACAAAACTTAAA 288179 30 100.0 38 .............................. CATAAATCAATAACAATTGAAGTATTTTCATCTATTTT 288111 30 100.0 36 .............................. TTTTTAATCTATCAATTGTATTATTATCAGTTAATG 288045 30 100.0 40 .............................. GCCCCACCACCAGCTCCTATTCCACCACTTTTAAGATTAA 287975 30 100.0 36 .............................. TTCTAACTGCCTACAGAATTGAGAATCTAAAGGGAT 287909 30 100.0 36 .............................. ATAGGGAGATAGTTTTCGGTGTTAGTTGGGAATTTG 287843 30 100.0 47 .............................. AAATGCTCCGTATTTAATACAGGTGGGGCTAATGAAGTTATTGCATC 287766 30 100.0 32 .............................. TCATTTAGTTTTACGGTAACCAACAAGTGATA 287704 30 100.0 38 .............................. TAGTTTCACCTACAGATATTTTTTAGCAATGTATGCAA 287636 30 93.3 39 .................TT........... TCAATCATTCCAATACTGCCTTTTATTTTCATTTTATAA 287567 30 100.0 39 .............................. GATGAATTATACTGTAAAATAACTATTCCTATAGAAGTT 287498 30 93.3 42 .................TT........... TATTGCAAGGGAGGGTGTGAGGCGGTAAGAGAATTAAACGGC 287426 30 96.7 41 .................T............ TTACATCAGCCATTTTATCACCAATTTACATATATGTAGTA 287355 30 93.3 41 .................TT........... TAGTGCTCCTGGCCTCTCTACGGCATGACTTATCCAGTCCT 287284 30 93.3 51 .................T...C........ TATACTTCATATCTAAGATTGATTCCCCTGCAACTGAAGAAATAAACAATA 287203 30 96.7 37 .................T............ ATATGTTTGACTTTTAGCTTCCCACAAAACTTTATAA 287136 30 90.0 0 ......................G.AA.... | ========== ====== ====== ====== ============================== =================================================== ================== 21 30 97.8 40 GTTAAAATCAGACCGTTACGGTATGGAAAC # Left flank : AATGTTTATATTTGGTGCCGTAATTTTGTGGGGAGGGGCAATTTATTTCTTATGGAGATCTATGAAAAGTAAAAATAATGAAGATGAAGTAGAGGATTGATATACTTCAATTTATATTTAAATATTTAAATGACATTTATCTCGTGGAAATTCTTTTATTTTCAATTTAAAGCTTTTTAAAAACTTATTTTTTAATTTTAAGAATTTTTAGAGAATTTCTAAGGGTAGCTTATTTTGATAATTTTATTTATTTAGATTTATTAAATTATAGAGATTTTTAAAAGATTTTAAATAATTATTTTTAAATCAAAATTTCCCCAATAAATATTTGCATTTTTAAAATTTTAAAACTTTTTAAGATAGAAAATTAGAAAATAAAATCAAATCAAAAACTTCGAAGGTTTATAAATAAAAGGGGTTATCTACCCTTCGAAAATTATGGTATGAAAAAGCTTAAATATTAGAAGAGATAACATACAAAATGAGCAAAATAATGCCCT # Right flank : ATAATTTTAAAATAAAAAAATAAAAATAGGGAAGTATCCCAATAGAGGGGGGCGTAGCCCCCTATGGAATTATAGCATTCCAAAAACCTCAAAATATTTTTTCTGCCTAACAACTATTACTGGAATGTTGTTTTCCATTAATTTCTCTTTAAGTTCTTTATCGTTTGTTGCAACAATGACATTTTTATTTTCCTTTGCATAATTCAAAATTACCTCATCTGCATAACCTTCATAGTTAATTAATTTATAGTTTTTTATTTTTGCAAGGGCTAAATTAACAGCTAATTTTTCTTTACCTTTTAAATCTCCGCTTCTTAATAACTTCTCTAACTCTTCTTTTACAGGAGAGAGAATAACAATTTCAAATTTTGAATTTATGACCCTCTCTATCTCATAATCAAAGTTTATCTTATGCTTAAAAACATAAATTAAAAAGTTAGTGTCAGGAACTATTTTGTATATGGTTATCACCCTAATAATTATTCTAAGGATTTTTATTA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTACGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 4 321365-320224 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 321364 30 100.0 36 .............................. AACTTTTTCACTTTTTGCTTTTTAGGTGCATATTTT 321298 30 100.0 39 .............................. GATGATAAAGTTTATATTGAAGAAAAACTTGACGGTGCA 321229 30 100.0 37 .............................. ATTGATATAAAAGCACTATATAACTTTGGTGATTTAG 321162 30 100.0 43 .............................. GACATGGAGACTAACCCAAGTATTCTCATTGATATGCACAGAA 321089 30 100.0 42 .............................. TTGATACTATTGATGATACATTAAAACAAGAAATGTTGAATT 321017 30 100.0 42 .............................. CTATTTCATAAATATCCTCTCCAACAAGTCTTTCTCCACATA 320945 30 100.0 36 .............................. ACATTCATTTGTTCATATAATAATGATATATATAAT 320879 30 100.0 36 .............................. GCAGGTAATAATGATTTATTTGATACTACAATGAAA 320813 30 100.0 37 .............................. TCAGAAATTAATGCTTTTGTTATATAATGAATGTTTT 320746 30 100.0 42 .............................. TTGATTTGTCTGGAGACACTTATGAATTTGAAATAGAATTTG 320674 30 100.0 46 .............................. TCTTAATTTTTTTGTAACAATAACCCCAGATTTTATTTCTATACTC 320598 30 100.0 47 .............................. TAGGGAGCAGTTAGAGCGTTGGTATAGTATTATTGAACAAACTTATA 320521 30 100.0 43 .............................. CATGAAATCTTTATGTCTTTGATATGCTTTAACTAATTCATGA 320448 30 100.0 35 .............................. TTTAGGGCATCAAAGGAAGGCAATATTACAATTTT 320383 30 96.7 34 .............................C TACTACTTTGAGAGTCCAAGATATGAGTTAGAAT 320319 30 96.7 36 .............................C TTTATCATATACTTTTAAGCTAAGAGTATATATTAT 320253 30 83.3 0 .................A....G.AA...C | ========== ====== ====== ====== ============================== =============================================== ================== 17 30 98.6 40 GTTAAAATCAGACCGTTTCGGTATGGAAAT # Left flank : GTAAGCCAAATGCAAAAGTTGGTAGAAGAATGGGTGTTGCTTTAGCTTATGCCGATTCAGTAGAGAAAGCAAGAGAATTAGCTGAGAGATGTGCTCATGCTGTAAAAATTGAATAATTTTAATATTCAAATTACATTTATCTCGTGGAAAGTTTTTTATTTTTAATTTAAAGCTTTTTAAAAACTTATTTTTTAATTTTAAGAGTTTTTATCAAATTTCTAAGGGTAGCTTATTTTAATTATTTTAAGTATTTAGATTTATTAAATTATAGAGATTTTTAAAAGATTTTAAATAATTATTTTTAAATCAAAATTTCCCCAATAAATATTTGCATTTTTAAAATTTTAAAACTTTTTAAGATAGAAAATTGAAAAATACACTTAAATTAAAAACTTCGAGGGTTTATAAATAAAATGGGTTATTAACCCTTCGAAAATTATGGTATGAAAAAGCTTAAATATTAGAAGAGATAACATACAAAATGAGCAAAATAATGCCCT # Right flank : ATAATTTTAATAAATAAAACAAAAATAGGGGAGTATCCCAATAGGGGGTGTAGCCCCCTATGGAATTAGAGCGTTTCGGTTTAAAAATAACTATTTTCTATGAAAATTATTCATAACAATTTTACAAAAAATCTTTTTATTAAAATAAAAAATATTGAAATAATCAAATCTATCTATTTTCAATAACCAATAAAAAGCTTAAATACCTATATCACCACTGTGGGATTATGAAAGTGAGAGAATTAAAAAAGAGGGAAATTAATTTAATAAAAGAGGAATTGAGCAAATACACCAATGAAGATTTTGTTAAAAATTTTGATTATGAGAATTTGGCAGTTTTGGAAGGGAAATGGCTAACTGTTTGTTACACAAATAAACAAACAATAAAGAATTTAAATATGTTTCATGAGATATTTTCAGTGGGCAATGTGTTTGGTGAGATTAAGAGAAAATTTAGATTATCCTTAGAAGGTTTTACATTAATATCTTCCAATATAATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTTCGGTATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 5 433078-432544 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================ ================== 433077 30 100.0 34 .............................. AATATTAATGATAATAGTTTAAATGGCAAAACAG 433013 30 100.0 37 .............................. ATGTTGATGTATTTGTTTTAATTGTGGTATTATCCAT 432946 30 100.0 40 .............................. AAGATGACACCAGAATTACTTGAGAAAATCCACGCTTACC 432876 30 100.0 34 .............................. AAATGTTGTAAATTCAGAAGGGACGTATAATTCT 432812 30 100.0 40 .............................. TTGCATCAACTGAAACTGCGTTTATAATGTTTATTTCATC 432742 30 100.0 60 .............................. GTCTTCTTCCTCATCCTCATCAAATCTTTCCTCTGTGGAGCTTTCATCCAAAACCTCATC 432652 30 100.0 49 .............................. AAAGTTATATCAATGTGAGCGTCTAAATCACCGTGTCTTAATACCACTT 432573 30 96.7 0 ..........................G... | ========== ====== ====== ====== ============================== ============================================================ ================== 8 30 99.6 42 GTTAAAATCAGACCGTTTCGGTATGGAAAC # Left flank : GCCAGAGCTTTTAATGATTGAAGATGCTTTAGGGCTAATTTAAATATTTTACTTTTAATTTTTGAGCTTTTTATTTAAAATTATAGTTATTTTTAATGTTATTTTGAAATATTAAATTTAAATATTCAAATGACATTTATCTCGTGGAAATTCTTTTATTTTCAATTTAAAGCTTTTTAAAAACTTATTTTTTAATTTTAAGAATTTTTATCAAATTTCTAAGGTTAGTTTATTTTAAAGATTTTAAGTATTTAAATTAATTAAATTATAGAGATTTTTAAAAGATTTTAAATAATTATTTTTAAATCAAAATTTTCCCAATAAATATTAAAGATTAAAAAATTTTAAAACTTTTTAAGATAGAAAATTAGAAAATAAAACCTAATTAAAAACTTCGAGGGTTTATAAATAAAAGGGATTATTAACCCTTCGAAAATTATGGTATGAAAAAGCTTAAATATTAGAAGAGATAACATACGAAATGAGCAAAATATTGCCCT # Right flank : ATAATACACATGTAAAAATATGGGGGAGTATACCAATAGAGGGGGCAAAGCCCCCTCTATGGATTAAAAGAGATTATGTAGGGCTGAAAGCCCTACCTTAATCTATTCTGGGTATCCGCAACCATAGGGGCTACGCCCCTATTGGGATGCCCCAGCAATTCCAAGTTACACCTCCGAGCGTAAGCGAGGAGGTGTTAGATTTTGGTGAAGCTTTTTCTAAAAGGTTCATAACAATAGGGCGAAGCCCCCTATAGAATTAGAGCATTTCGGATATTTTTAAATAGTTCCTTAAAAAATAGTAATTTAACAATTTTTTAGATGGTATTATGTATGTGATTGTTGTTTATGATGTGAATGTTGCAAGAGTGAATAAGGTAAAGAGTTTTCTTAGAAAGCATTTGAATTGGGTTCAGAATAGTGTTTTTGAAGGGGAGGTTACAAAAGCAGAGTTTGAAAGAATAAAAGAGGGAATTTTAAGGATTATTGATGAAAATGAAGAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 6 769284-770276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 769284 30 100.0 42 .............................. TGCATAAAATTTAGCTTGTTCTAAATAATCTAATTCGTTAAA 769356 30 100.0 36 .............................. ATCGGTTAGGTAGGTTGTGGTAGGTAGTAACCGAAA 769422 30 100.0 36 .............................. AATGATATCAACGTATTAATTCAAGAAACAAATAGG 769488 30 100.0 36 .............................. AAGGATGAGATTGAAGAAACTGATGAAATGAAACCG 769554 30 100.0 46 .............................. TATTAGAAAATAACACAATAGTTGACTGGAAAACTTCTAAATATTC 769630 30 100.0 32 .............................. AATGATCCAAATTTGGTTATTGGAAGATTAGC 769692 30 100.0 32 .............................. GCCACTATCGGTTGGATATTTTTTGTATTTGT 769754 30 100.0 48 .............................. CATTTTGATTTTACTTCAATTGATTTTACAATTTTACATTTATCTATA 769832 30 100.0 41 .............................. AATTTGTCATTATCAATCATAGTAAAAATATTTTTATAATA 769903 30 100.0 37 .............................. GCGGGTGCGTTTTCCACAGTTGCAAAGAAAAAAGTAA 769970 30 96.7 42 .................A............ ACACTACTGAACATATTTTGTAATCCTGTTAAATATCCCGCA 770042 30 96.7 41 .................A............ TACTCTCTCACCTCACTTGTTTTTTTTAAGATTATGTTTTA 770113 30 96.7 38 .................A............ GATTGGGTGCTTATTTTAGTTGTAGTTATTTTAGTTGT 770181 30 96.7 36 .................A............ AAAAAGTTATAATGTTTGGATAAAGGTGGAAAAATG 770247 30 90.0 0 ......................G.AA.... | ========== ====== ====== ====== ============================== ================================================ ================== 15 30 98.5 39 GTTAAAATCAGACCGTTTCGGTATGGAAAC # Left flank : ACGCTCGGAGGTGTAACTTAGAATTGCTGGGGTATTCCAATAGGGCGAAGCCCTATGGTTGCGGATACCCCAATCCATTAAGTTGGGGCTTTCAGCCCCAATTAATGTCTTTTATATTTAAATATTCAAATGACATTTATCTCGTGAAAATTCTTTTCTTTTTAAAATAAAGATTTTTAAGAGCTTATTTTTTAATTTTAAAGATTTTTAGAGAATTTCAAAGGGCAGTTTATTTTGATAATTTTAAGTATTTGAATGTATTAAGCTATAGAGATTCTTAAAAGATTTTAGTTAATTACTTTCAAATCAAAATTTCCCCAATAAATATTTGTATTTATAAAATTTTAAAACTTTCTAAAATAGAAAATTAGAAAATACACTTAAATTAAAAACTTCGAGGGTTTATAAATAAAAGGGGTTATTAACCCCTCGAAAATTATGGTATGAAAAAGCTTAAATATTAGAAGAGATAATATACGAAATGAGCAAAATATTGCCCT # Right flank : CATAATTTTAAAATAAAAAATAAAAATAGGAAAGTACCCAATAAACAGGGATTTGCTCCTCTATGGATTAATAAAAAGAAAAAAAGATTTTTTAATTCTCTTTTTAAATTAAATAATAAAAAAGAGTTTATTTAGAATTTCTTAAACATTTCTTCTACAATTCTTGCAAATGCAGGTCTTGTTACAAATATCCCTATTAAAACCCCTGCTATTGTGGTTATTGCAAACCCTTTCAACATCCCTACACCGAGCACAAATAAAGGTAGCATAGCAGCTATAGAAGTAGCCGCTGAAGCAAATATTATAAAGAAAGCTCTTTTAATGCTTGCTCTTATTTTTCCAGCACCTCTTTTTAACGCTTCATCAGTTATAACAATTTGATTATCAACTCCTGTCCCCACAGCTGCTATAATCCCTGCTATTGAAGGTAAATCTAACTTCCAATCTATTAAAGATGCAAATCCTAATATAATAATAATCTCTGATAGACATGTTATTAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTTCGGTATGGAAAC # Alternate repeat : GTTAAAATCAGACCGTTACGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 7 784070-784581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 784070 30 100.0 41 .............................. AAAATTAAAATGCCAAAAGTTGCAACACAATTAGCAAAAGA 784141 30 100.0 36 .............................. GATATTAATTTATCACTTCCAGACATCTTTAAGAAA 784207 30 100.0 36 .............................. AAAAATCAAAGACATCGAATACAAAATTAATCTCAT 784273 30 100.0 37 .............................. GAATAATAATCCTTATCAAAAATGTATATCCCTCTTA 784340 30 100.0 43 .............................. CATTATCAACCTTTATAACTGCAAAAAGTAATTTTTGTTTATG 784413 30 100.0 37 .............................. ATTTTTTTAATTTTTGTCTCGTTTAGTATTTTTTGGA 784480 30 96.7 41 ................A............. TACAACTCCCTTAATAATTTTTGTTTCTTTTTTAAGAGATA 784551 30 80.0 0 ..............TC..A..G...A...T | A [784571] ========== ====== ====== ====== ============================== =========================================== ================== 8 30 97.1 39 GTTAAAATCAGACCGATTCGGTATGGAAAC # Left flank : ACTACAAAAAATGCTATAGATAAGTTGAGAAAAGGTAAAATGCTAAGAATTGGAGGTCCATTGGGGCAAATATTGAGGCAGTTAATGTATAAAGATATTTAAGATGTCATTTTATATTTAAATATTTAAATTACATTTATCTCGTGGAAAGTTTTTTATTTTTAATTTAAAGCTTTTTAAGGGATTATTTTTCAATTTTAAGAATTTTTATCAAATTTCTAAGGTCAGTTTATTTTGAAGATTTTAAGTATTTAAATTTATTAAATTATCTTTTTTTCTAAGAAATTAAAAATAAACATTCTTATTTTTAAATTTCCCTAATAATTAGAAAGTTTTTAAAAATCCATAAAATTTATATATGGTTAAGATGAAAATAAACCTTAGATTAAAAACTTCAAAGGTTTATAAATAAAAGATGAAACCTACCCTTCGACAAATATGTTGTAGAAAAGCTTAAATATTATGAGAGATAATTAAATTATGTCTGAAATAATTGCCCT # Right flank : TAAACTCTTTTTAAAAATAAAAAATAGAACATATCAATAGGAGCTAACATCATATAGAAGAAGAAAATCTTATTTTTAAAGCATAAAATAAAGCATTTCTAAAAATATCTATTCTTTTGAATCTATTTTGTCATACTGATGATTTAATTTTTAATACTTTAAAACTTTAAAATTTTTATATGTCCTTTTATATACTCTAAAGATTACCCAAAAATAGGCAGAGGTTATGATTATGAAAACAATTAAAGAAATTAATGAAAAAATTAAAAAAGGAGAAGCAGTTGTTGTAACGGCAGAAGAAATGATAAAAATCGTTGAGGAAGAAGGAGCTAAGAGAGCGGCTGATTATGTTGATGTTGTTACTACAGGAACATTTGGAGCTATGTGTTCATCTGGAGTGTTTATAAACTTTGGACATTCAGACCCACCAATAAAGATGTTAAAGATTTATTTAAACAATGTTGAAGCTTATGGAGGTTTAGCAGCTGTTGATACATACA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGATTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 8 974312-974826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 974312 30 100.0 42 .............................. TTCAGCACCGCACCAACAACAAGAAATAACTACAAAAAAATC 974384 30 100.0 42 .............................. CTCGTTAACGTTCCATTTCCTATTATTGGTGTAAAAAGTGCT 974456 30 100.0 36 .............................. AAAGTTACAGCAATTGAGACCAATGTTTCAGCAAAT 974522 30 100.0 37 .............................. GAATATGAGAATATTGAAATAAAAAAACCTGTGCTTT 974589 30 100.0 40 .............................. AATGTACTCGCAACATCTGCGCCGTCTATGTATGTGAGTA 974659 30 100.0 36 .............................. TTCGGCAGGGATATAATAATATAATATACACATTGC 974725 30 100.0 42 .............................. GCCCCTATTGGGTGATACTGTGGGTCAGCAAATAGCCGTATA 974797 30 96.7 0 .................T............ | ========== ====== ====== ====== ============================== ========================================== ================== 8 30 99.6 39 GTTAAAATCAGACCGTTACGGTATGGAAAC # Left flank : ACTGCTGATATAAAGATTTATAACATAAAAGAAATAGTTGATGTCTGTAAAAAAGTGATTAGTGGAGAGATTAAAGGTAAAAGAGCGAGTTAAAAATTATATATTAAAATTGAATAACTAAATATTTAAATGACATTTATCACATGGAAATTCTTTTCTTTTTAATTTAAAGCTTTTTAAGAGCTTATTTTTCAATTTTAAAGATTTTTAGAGAATTTCTAAGGGTCACTTATTTTAATTATTTTAAATATTTAAATTAATTAAATTATTGAGATTCTTAAAAGATTTTAAATAATTATTTTTAAATCAAAATTTCCCCAATAAATATTAAAGATTAAAAAATTTTAAAACTTTTTAAGATAGAAAATTAGAAAATAAAACCTAATTAAAAACTTCGAGGGTTTATAAATAAAAGGGGGTATTAACCCTTCGAAAATTATGGTATGAAAAAGCTTAAATATTAGAAGAGATAACATACAAAATAAGCAAAATATTGCCCT # Right flank : CCTTTTTTAAGTTTATTGCTAAGAGAACATAAGATTTTGTTTTTACTATTATAAATCCATATATCTAAAACTATAATAACAAAATTTAAAACTCTCAACCCATATATCTCTTTTTGGTGAGAAGTGTGATAATAGAAATTGAAGGAATTAAACTAAAACTACATCCAGAAGTATATGAGCCAGCTGAAGATTCTATTTTATTATTAAAAAATCTTGTTGATGTTAAAAATAAAGAGGTTTTAGAAATAGGTGTTGGAACTGGATTAATCTCAATTGCTTGTGCAAAAAAAGGGGCTAAAAAAGTAGTAGGAGTTGATATAAATCCCTATGCTGTAAAATTGGCAAAAGAAAACGCTGAACTAAACAATGTTGATGTTTTATTTTTTGAAAGTGATTTATTTGAAAATGTTACTGGAAAGTTTGATGTTATTCTCTTTAACCCCCCTTATTTACCAACATCTGAAGATGATAAAATAGACAGCTATTTAAATTATGCCTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTACGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 9 1439422-1440582 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 1439422 30 100.0 42 .............................. CTAAATATATAATTTTACTTCTTGGTGATATTTCTTGTTAAA 1439494 30 100.0 40 .............................. ACTTCATATATGACATCTTTATCTATACAACCGCATAAAA 1439564 30 100.0 45 .............................. TCTTTTACTCCCTTCAAAACATCCTCTAAAGTTATCTCTACCATA 1439639 30 100.0 35 .............................. TTTGGGATTGTGGCAACACATTAAACATTGTTGGT 1439704 30 100.0 40 .............................. CATTATCTACATACCATAAATTTTTAACCACAGCCTCACC 1439774 30 100.0 35 .............................. TTAACAAAGTTCCATCCTTTCATACCAACTTCTGG 1439839 30 100.0 49 .............................. AATAAATATAAAAGGAGCTCCAAACCCTTCCCCTAATCTATGAAACCTT 1439918 30 100.0 37 .............................. TTCTCAATGAATTCTTTTTCCATAAATTCTTTTAATT 1439985 30 100.0 37 .............................. ATCAAACATGTTCTTAACAATTTTCTTTGCTTTGTCT 1440052 30 100.0 43 .............................. TCTATTGTTCCTCCAGTAATTATCTGGGGAAAGTCTGGGTATG 1440125 30 100.0 43 .............................. ACTTATTGGGTTAGGGAGAGCCCGTGACTTTCCAAAACCTAAC 1440198 30 100.0 51 .............................. TCTTCTTCTGCTACTTAGCCATGCCCTATATGCTCTCATACTTCTAAAGTG 1440279 30 100.0 41 .............................. TTTTTATCTAAGAATTGACAAAACTTTTCATAAAGCTCGTT 1440350 30 100.0 36 .............................. ACTAATAACGTTGATACACTAAATTTAATAGTAGGA 1440416 30 100.0 40 .............................. GCCAATAGAAGAGTGGAATTACATCGTTAGATTTATCAAA 1440486 30 100.0 37 .............................. GAGAAAAGAGAATGTGTTTGATGTTAAAATAATATTC 1440553 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== =================================================== ================== 17 30 99.8 41 GTTAAAATCAGACCGTTTCGGTATGGAAAC # Left flank : GAATTGCTAAGACACCAATAATCATACTCACCCTCGTTTTAATTTATTAATGTTATAGTGTTTATTTCAATCATTCATAATATATCTCTAATTCTTATTCTTTGTTTTTTGTTGTATTTAAATATTCAAATGACATTTATCACGTGGAATGTCCCTTATTTCCAATTTAAAGCTTTTTAAGAGCTTATTTTTTGATTTTAAGAATTTTTATCAAATTTCAGAGGGTAGTCTATTTTAATAATTTTAAGTATTTAGATTTATTAAATTATAGAGATTTTTAAAAGATTTTAAATAATTACTTTCAAATCAAAATTTCCCCAATAAATATTAAAGATTAAAAAATTTTAAAACTTTTTAAAATAGAAAATTAGAAAATAAAACCTAATTAAAAACTTCGAGGGTTTATAAATAAAAGGGGTTATTAACCCTTCGAAAATTATAGTATGAAAAAGCTTAAATATTAAGAGAGATAACATATAAAATAAGCAAAATAATGCCCT # Right flank : CATCTACTTGTTTTTTATCATTTTTGAAAAAAGCTTAGTATATCCTCAAAACTGAAATTCTTTTTTAGTATTATTATAAAAAAAGATAAAATATAATATATTTAATTTTTGCATCCTAATTCTTCCCTCATAAATCTCGCATTACTTCTCCTTATAAACTCTTCACAAACTTCATCTGGATTACCTTCCATAATTAATTTGTTCTCATCTAATAATATTGCCCTATCGCTAATCTCTTTAATAAACTCTACACAGTGTGAAACTAAAACTATTGTAGTTCCAAATCTTTCATTTATTATTTTTAGGTAGTTGGCAACATCTCTCAAAGTTATTGGGTCTAAATCACCAAACGGCTCATCCAAAAACAAAATTTTTGGCTTTGTTATCAACTGCAGTGCCATAGCTACTCTAACCTTTTGCCCTCCACTTAACTCAATAACTTTCTTCTTTAAAATGTCTTTTCCTAAATCTAAAGCCTCTAAAATCTCTTCTGGTTCAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 10 1464714-1465474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1464714 30 100.0 36 .............................. TTTAGTTGATTTGTTTGATTTTGGCTTTGCTGTTTT 1464780 30 100.0 38 .............................. AAATAGATGTCCTAACGATGTGGAAAGGTGTCAATTTT 1464848 30 100.0 36 .............................. AATCTACGTATCTTCTTATATATATACACAACCAAC 1464914 30 100.0 35 .............................. CCCCCACAAGCCCTTTGAAATTATCATTTAATTTG 1464979 30 100.0 35 .............................. CTTGTCCTTGTCCCGTAGTAGTGTCTTTTATGTGT 1465044 30 100.0 35 .............................. TCTTTTTAATCTTCTCTAAGTCAATCATAAAAACC 1465109 30 100.0 35 .............................. TCTTTTTAATCTTCTCTAAGTCAATCATAAAAACC 1465174 30 100.0 44 .............................. AGCTACTGATTATTTTCACTGCTGTTGTTATCATCCCCATCATT 1465248 30 100.0 36 .............................. GCTTTTACCCTCCCCCGACGGCCCCGTGATTGCGAG 1465314 30 100.0 35 .............................. AATTTTAGCTATTTGATTAACTGAATCCCATTCTT 1465379 30 100.0 37 .............................. ATAACAATCTTTATCCACGAACAAAAATAATTTATCT 1465446 29 90.0 0 ......................-.TT.... | ========== ====== ====== ====== ============================== ============================================ ================== 12 30 99.2 37 GTTAAAATCAGACCGTTTCGGTATGGAAAC # Left flank : TGATTCATCATAATCATCACACCAAATTTCATTATTAGATATTGTTGTTTAAAAATATTGTAAATATAAAAAGCTTAAATAATTTATGTTATTAATAATATTTTTAATAGCTTATATTTAAATATTCAAATGACATTTATCTCGTGGAATGTCCCTTATTTTCAATTTAAAGCTTTTTAATTTTTTATTTTTCAATTTTAAGAATTTTTATCAAATTTCGAAGGGTAGTTTATTTTGATAATTTTAAGTATTTAAATTAATTAAATTATAGAGATTCTTAAAAGATTTTAAATAATTACTTTCAAATCAAAATTTCCCCAATAAATATTTGTATTTATAAAATTTTAAAGATTTTTAAATTAAAAAACTAAAAAATAATCTCAAATTAAAAACTTCGGGGGTTTATAAATAAAAGGGGTTATTAACCCTTCGAAAATTATAGTATGAAAAAGCTTAAATATTAGAAGAGATAACATACGAAATGAGAAAAATAATGCCCT # Right flank : CTCATCCAAAAATAGCTATTTTTTTTTCAAACTGAACTTAAATTCCAAAGTTAAGGATAAGTTAGGAATTTTCGAAGTGCATGCCACTGTTTTATAGAGGGTATATTGCCGATTTATAAAAAATAGGCAGTCATTTTGTATAATAACTAATTAAGGGAACATGTTAAAGAAAGATAAAATGGAAATGAAAAATTATATCCAATAGTTGAAATGTTATCCAAAATAAAAGAGCATATACTCTGAACAAAAATATACTTGCATAAGTGTATATTCTGCCACCTTTCCAGTGAAGATAACAAAAGTTATATTCTATAGTTGCCATAACTATGAGTAGAAAAATAGAGGATGATAGTTATGGAGTTATCTAACAATGATGTGTTTTTTATTGCCATGGGGATTTATTTGTTCCTATTGTTTGCTATTGCATTTATGACTTATAGGTGGGCTAAGAGTGTAAAATTGTCTAAAACATAATTTTAACTATTTTTTATTAGCTTATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 11 1466619-1466858 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1466619 30 100.0 42 .............................. TACGCCCAGTTAAGTGCTATAATTTATGGACTATTAATAGTT 1466691 30 100.0 36 .............................. CCTAATTTTTTTATTATGTATCTTAATTCATTATGA 1466757 30 96.7 42 .................T............ GTGTTTTATGAGTTCTTCTGGTGTGAATGCTGGTGGTTTGTT 1466829 30 96.7 0 .................T............ | ========== ====== ====== ====== ============================== ========================================== ================== 4 30 98.3 40 GTTAAAATCAGACCGTTACGGTATGGAAAC # Left flank : ACAACATAGTTGTAGAATTCTATTCTATCTTCTATGCTTAGTTGTTTGTAAATGTCAAAGCCATAGCCCAATATAAATTGGAAAGCAAATAATAAGCCAATTCCCATAATTACCATGAATATAATGCTTATGTTAGTTGGATACTGCAAGGGCTGGAACATTATACCAATAGCTATAACTAAGTAAGTCATAAGAGTTAATTTTATTATGGAAATTGTGTTATCTATAAAATAGGTTATTTTATCGTTCATAGCAACACCATTAGGGGCTTTACCTTTCTATTTTTCTAAGGGTTTATTTAAAACATAGCATCTGGTGTGGTGTTGCTATTTTCCATTGTTAATGTAATACTTTTATTTTTGCTTAAGTAAACTAAATTGTATGTTATCATACTTAAGAGCTTATTTTTCAATTTTAGGATTTTTAGGAAATTTCATTACGGTGTAGAAAAGCTTAAATATTAAATGAGATAACGTATAAAATAAGCAAAATAATGCCCT # Right flank : CATTTTACCATTCAAAGACCATTATAGAGTGTATGGATTAAAATAAAGCGAAAAAAATCATAAATTCTTACTTTTAACAATTTTTTTAATCTTTAAATATAAAGTGGCAAACAAAACAAGCACTGGGATAATTTCTAATCTACCAATCCACATAGCTATAATTCCCGCTATTTTTCCAATTATTGGGGTTTTTAGAGTAACTATGCCTAAAGACATACCTATATTTGAAGTAAAAGAAATAGCATCAAATATTGCCTCATAAGGGCTGTATCCCAAAGATATAAATGTTAAAGCCATTAAAAATGAAGAAAAGCTGTATAAAAAGAATACAACAAATGCTTCTCTAATTATTCTATAATCTAAATCAATATTATCAAGATGTTCATGAATTACTGCTGATTTTGGGTAGATAATTTCTTTTATCTCATACCAAAGGGCTTTTAACATAACTAAAAACCTAATTATCTTAACCCCTCCAGTTGTTGTTCCAGCCCCTCCAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGTTACGGTATGGAAAC # Alternate repeat : GTTAAAATCAGACCGTTTCGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 12 1522398-1522152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009149.1 Methanocaldococcus bathoardescens strain JH146 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1522397 30 100.0 37 .............................. AACAACTCTATAATATCGGGGTCTTCTAAGTTTGCTT 1522330 30 100.0 45 .............................. TTATAAGGCGCATACATTTTCAAAGGAGGGACTTGAATGGAAGAG 1522255 30 100.0 44 .............................. TTCTTTATCTGCTTTTGTCATATGCGACTTTATTAATTCTACTT 1522181 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 4 30 100.0 42 GTTAAAATCAGACCGATTCGGAATGGAAAC # Left flank : TGTTAAATGTTTAACATGTGGGAAAGTTTTAGTTGAGCCAAGAGGAGGAAAAGGAAAAGTTAAAGCTAAGATTTTAGAAATTTTAGGTTAAAAATTCCAATCTACTTTTTTTAATTATTTAACTATTTAAATGATATTTATCTCGTGGAAAGTTTTTTATTTTCAATTTAAAGCTTTTTAAGAGCTTATTTTTCAATTTTAAGAGTTCTTAACAAATTTCTAAGGGTGACTTATTTTAATTATTTTGAATATTTGGATTTATTAAATTATTAAGATTTTTAAAAGATTTTAGATAATTACCTTCAAATCAAAATTTCCCTGATAATTAAGATGTTTTTAAAAATCTTTAAAATTTATATATGGTTAAGATGAAAATAAACCTTAGATTAAAACTTCAAAGGTTTATAAATAAAAGGTGAAACCTACCCTTCGACAAATATGATGTAGAAAAGCTTAAATATTATGAGAAATAATTAAATTTATATCTAAAATATTGCCCT # Right flank : GATGTCATAAACTACTGGGCTGGAACTTTTTTCTTACAAATTGGTTAAAATCAGACCTCTCAAATGATGAAATTTAAAATCAGCTATTTTTAAGCTGGTCTTTGTTTATAGTTATTTTTATGTCTATTTTATCAATATTCCTAAATATATAAATTAAATTTTTTATAAAAAACATTTAATAGCAAAAATAACAGAAATTAAAATTAGTAAAAATGGTGATAATATGGAAATTATTTTTAGAGGGGCAGCGTTAGAGGTTGGAAGAAGCTGTATAGAAATAAAAACTGACAAAAGTAAAATACTATTAGATTGTGGGGTTAAGCTTGGAAAAGAGATTGAATACCCTATATTAGACGAATCAATAAGAGACGTTGATAAAGTTTTTATTTCTCATGCCCATCTTGACCACTCAGGAGCTCTACCAATACTGTTTCATAGAAAAATAGATGTTCCTGTAACTACAACCGAGCTATCAAAAAGATTAATTAAAGTTTTACTAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGATTCGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA //