Array 1 899022-899904 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP030238.1 Salmonella enterica strain SA20055162 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    899022	    29	 100.0	    32	.............................	TACAGGCCAAAACGATTGAAGGGGTTAACGGC	
    899083	    29	 100.0	    32	.............................	CGACCTGATAAGAGTCGGCCTGGACGTTTACC	
    899144	    29	 100.0	    32	.............................	TTGCTGCGTGATTGGGAGTGGGCGTGCCTGAA	
    899205	    29	 100.0	    32	.............................	CCCTTCTCTTCAGCCTCGATTAGCGCCAGTCG	
    899266	    29	 100.0	    32	.............................	CAGCCACTTGGCATTAACTTGCTCTGCATCAC	
    899327	    29	 100.0	    32	.............................	TCGCTGGCCCCGTTGTACAGACCGGTGACTCC	
    899388	    29	 100.0	    32	.............................	ATAATCAACCTCGTTTTCTAGATATTTTGACC	
    899449	    29	 100.0	    32	.............................	CGCCTTAACATTACCCTCGGCGATAGCCTGCC	
    899510	    29	 100.0	    32	.............................	TTTCGCTCACTCAGTTCGGTACGCTTGGTATT	
    899571	    29	 100.0	    32	.............................	CTTGGCTTCGCTCCCCGCAAAGGCGCGCCAAC	
    899632	    29	 100.0	    32	.............................	CGCGCGGACCATTTCACCGTTAAAAATCATTC	
    899693	    29	 100.0	    32	.............................	AATATATCCCCGCCAGTCTCAATTGGTGCTGG	
    899754	    29	 100.0	    32	.............................	GCAGGTACTAAAAACCGTTATTACGTTGGCGG	
    899815	    29	 100.0	    32	.............................	GATCTGTCCGGTATGGTTATTGTCTGCGGATA	
    899876	    29	  93.1	     0	...........................GT	|                               	
==========	======	======	======	=============================	================================	==================
        15	    29	  99.5	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   TGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCGTTCTGGCTGAGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGATTTGAGTTCCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA
# Right flank :  TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATACATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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