Array 1 6929-5374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMK010000003.1 Listeria monocytogenes strain 2013L-5061 NODE_2_length_697750_cov_12.6214_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6928 36 100.0 30 .................................... AATGTTAACTTTATATCGATTGCAAAACGA 6862 36 100.0 30 .................................... AAGAACAAAGAACATTGAATTTAACCGACA 6796 36 100.0 30 .................................... AAAATATAATCAGAAGGTGTCGGACTACCT 6730 36 100.0 30 .................................... ATGATTTTGCGACAATCAGGCTTTCTATAC 6664 36 100.0 30 .................................... TTCACATTGATAACGAAAAACATATTGTGC 6598 36 100.0 30 .................................... TGACACAGATAGTTTTGAGGTAAGCTATTG 6532 36 100.0 30 .................................... AAAATCAAATTTTTCTGTGATACCTTTGTA 6466 36 100.0 30 .................................... TAGTCAGCTGTGTAGTACCAACCTTGGTTT 6400 36 100.0 30 .................................... GATTCGCAGAAAGGGGGCTCGTCTAATGTT 6334 36 100.0 30 .................................... ATCAAAGGCACGCCTTCTATTGTTGTTGGT 6268 36 100.0 30 .................................... TGGTTTAGAAAAAGGAACTACATTGTATCT 6202 36 100.0 30 .................................... TTTCGGCATCTATTCTCTTTAATTCATCTT 6136 36 100.0 30 .................................... TTCTGAGCGAGCACCTGCATCACCGTCGTA 6070 36 100.0 28 .................................... TATATTTTTTGAACTTCGGCAACCACTC 6006 36 100.0 30 .................................... TGCTCAATGCCTCTATAACCTTCTCGTCTA 5940 36 100.0 30 .................................... AAATACACCGAAGCTGTCGCCGTAGCTCGT 5874 36 100.0 30 .................................... TCTAATTATATTAAGAACTATGTTGACTCA 5808 36 100.0 30 .................................... ATTAATTCAGATTTTTCAAATTAAAAATAA 5742 36 100.0 30 .................................... TGAGGGCTATATTCAGCTAGAAGAAGAGTT 5676 36 100.0 31 .................................... GCAGACGACTTTAAACTGATCAAGGCGAGGT 5609 36 100.0 30 .................................... AGCGGACCCGCCTTTTTTTGACCTTATGCC 5543 36 100.0 30 .................................... TTGAAATTAGAAAGAATGACCGCGATTTCC 5477 36 100.0 29 .................................... GAATATTCTTCCCCCCATCACTAACAGGT 5412 36 83.3 0 ............CA.....C.....A.A.......G | C,A,T [5377,5380,5385] ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATAGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAAATGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 255045-255654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMK010000008.1 Listeria monocytogenes strain 2013L-5061 NODE_1_length_955488_cov_13.4262_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 255045 29 100.0 38 ............................. GTGTTATCAAAGTCAAAAATAACTTCTGTTTTACCTGC 255112 29 100.0 35 ............................. TAAAAAAGTAAATGCTAATGATGAAGATTATAAGG 255176 29 100.0 34 ............................. TCTATTTTTAAATTTGAAGTGACGGGTGCATGAG 255239 29 96.6 37 ..............A.............. TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA 255305 29 96.6 35 ..................A.......... TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC 255369 29 89.7 36 A.............AC............. GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 255434 29 96.6 34 ..........A.................. GTGTACTCTAATGCCAAATTTAATTCCTCCTATT 255497 29 96.6 36 ..............A.............. GCTAGAAGTGAAAGTGATAAAACCTTTGTAGCATCT 255562 29 96.6 35 ..............A.............. GGAATCCTGGACAGTCAGGCGAAGATAACTACACT 255626 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 95.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAGCCCCACCACCATCCACCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATACTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCAATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCTCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 666981-668402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMK010000008.1 Listeria monocytogenes strain 2013L-5061 NODE_1_length_955488_cov_13.4262_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 666981 36 100.0 30 .................................... CTTTTGCGGAACATTTGCCAGCAGTTGACC 667047 36 100.0 30 .................................... TTTGTCTTTATCAGGAGCACCAACAACGAC 667113 36 100.0 30 .................................... TCAAATGTTGGGCTATGACCGTAAGCAAGC 667179 36 100.0 30 .................................... TCTCGATAAATAAGATATACTTCTGCTTCA 667245 36 100.0 30 .................................... CACTTTATTGCCTATTAGTGACCTAGAAAT 667311 36 100.0 30 .................................... CCAAAATACGTTTGAACTTAGCGTTCTTTT 667377 36 100.0 30 .................................... TTGATTACTATCTTTAAATCCATGTGTTGT 667443 36 100.0 30 .................................... ATTCTTCATTGTTTCGTCAGCTACTCTAGT 667509 36 100.0 30 .................................... TCATTTAAATATCTATCAGCTACTGAAAGA 667575 36 100.0 30 .................................... TGGCAAAAAAAATTTTATAACAGCAAAGAA 667641 36 100.0 30 .................................... TTGTAAATAAAAACCTTCTTTGTCTCTTAA 667707 36 100.0 30 .................................... TGGATTTGATTGAACGTCAAGCAACTTTGA 667773 36 100.0 30 .................................... TAGATCGTTTTCACTTATTTCTACCGGTGT 667839 36 100.0 30 .................................... TGGGTTTTTAGCATGTTGAACGGGCGCACC 667905 36 100.0 30 .................................... TTTGATCGTCGCCGTTTGAGCGTAGTGGTC 667971 36 100.0 30 .................................... TACCTGTGCAGTCTGAGATTAGTGGGCGCA 668037 36 100.0 30 .................................... ATATGAATTCTTCTGAAATATCTAAGTCAA 668103 36 100.0 30 .................................... AATAAAAAAATATCCCATTATAGCAACAAT 668169 36 100.0 30 .................................... TATATACAAATGATGGAAAAGATGTTATTT 668235 36 100.0 30 .................................... TCCTCCGTGCGTTAATAACTCAAGAGCTTT 668301 36 97.2 30 ...................................C CTTCTTTATAAGCGATAGTTGCACCACGAA 668367 36 86.1 0 ............A........C....T.G......C | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAG # Left flank : TTGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAAACAATTGAAATAGTACAAGTCTATAAATATTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAAAAGATGAGTTACTAGAGCTAAGACGATATATCTCGTTAAATCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAACCTAGGAGAATAAAAAATTCTACGAG # Right flank : CCAGATGCAAGTTTATGTGATTTATTAAAAAGGAACTAGTTAAGAAATTGAAATATAAAATGATACAGGGTTCACGAGGTAATTCAAAAGAAGAAGCTGTTTTATGACTAGTGCCCAGTTTTTGGATGTATTTCTCTGCTCATTTCGCGTGCAGATGCTTTGCGCGTAGATAAGCTATTTTTAGTACGGCATTTTCCTGTGGGGAAGTCTCTTTCTTCGTGGCAATCATAGAAGTTAGCAGTTGTTCGATTTGATAGAGGATTAAAGAGTATCTTGCTTCGTTTGCAGCATGACTAAGTGTTGCTTTTTGCCCTTCTGAATAAAGTGTGTCGCGATAATTTGACTGGAAACGACGATTTTCAATTCATTAAGATAGTGTTGCACGATTGCTTTTCATTCAAAATTATATTTGTCTACGGTTTGTTTTGCGGTAATATCGTAGTCATAAAATCTTCGTAGTAGTTGTAATTGTGTCTATTTCACAGCGATAATCAGAAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //