Array 1 21969-18426 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWSR01000010.1 Pseudomonas aeruginosa strain PAC117A IPC134_10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 21968 30 100.0 36 .............................. AATTGCTGGGAGCATGTAGTTGCAAGCAACGGCTGT 21902 30 100.0 36 .............................. GAATCATCCGCAGGGAGAACGACGTACACCGAGCGT 21836 30 100.0 36 .............................. GCCGCCTGTCTGACGGCAGCGCGTCGGCGCAGTGGT 21770 30 100.0 36 .............................. CCCTGCCCCACACCGACCAGGCCGACGAATCGGAGT 21704 30 100.0 36 .............................. ACAGCGTTACTACGTATTCCGCTGACTACTGGTCGT 21638 30 100.0 35 .............................. GCCAGTGGCTTGCCGAGGCGACTGAGCCTGAATGT 21573 30 100.0 35 .............................. TGGCGCGCGCCATTGTCCCTGCCCTACAGCTGCGT 21508 30 100.0 36 .............................. AGCTGCAGGCGCAGAGCGCGGACGAAAGAGGCAAGT 21442 30 100.0 36 .............................. CACCATCCTGACCCCGGCTGGCGCCGTCCAGGCTGT 21376 30 100.0 36 .............................. ACGATTGCCGCATCTTCCATGGCGGCGAGCTGGCGT 21310 30 100.0 35 .............................. ACGCACTCGGCGTAGCGCTGCAGGTCGGCCACGGT 21245 30 100.0 36 .............................. TCTTCGCATCTGGCGATCCGCGCGGCGAACCGAAGT 21179 30 100.0 37 .............................. TGGTCTGGTGGATTCCTGGCACGAAGGTGTGCTGGGT 21112 30 100.0 37 .............................. GCTTCTGACGTAGCGAGTTGCTGACTGGCGCGTGAGT 21045 30 100.0 36 .............................. TTCGCGGGCTCGCCCATCTTCGGCTCCTGAGGCTGT 20979 30 100.0 37 .............................. CGCCAGTTTCCAAGTTGAAGCGTTGTCGGTGTACGGT 20912 30 100.0 35 .............................. ACGATCTCGCAGCAGTAAGCCAGTGCCGGGGTCGT 20847 30 100.0 37 .............................. ACGGTCTACGGCTTTGCCGGCTTCGTGCCTGAGTGGT 20780 30 100.0 36 .............................. CTCAGAGCTACGCAATCCCCTCTAACGTAGAGGCGT 20714 30 100.0 36 .............................. TGAAACGCGCAAACCGCTACGTCGGGGTCCACAAGT 20648 30 100.0 37 .............................. TCATGCTGCAATTCTCCTGCGCATGTCAGCCTCAAGT 20581 30 100.0 37 .............................. AGCAGGCACGTACCGCAGGCTCTCGAAATGTTAATGT 20514 30 100.0 35 .............................. ATGGTCCTTGCCCTGCTTCGGCGAAGGCTCCTTGT 20449 30 100.0 36 .............................. CCTGAACCGTTGCTGATCGAGGCCGATGGCCCAGGT 20383 30 100.0 37 .............................. ACCACGCAGACGCTGGACGGTCTCACCTCCGCTGTGT 20316 30 100.0 37 .............................. ACCGCCACACTGGAGTTGCGTGAGCGACCCATCATGT 20249 30 100.0 38 .............................. GCTGCCTGGCAGGCCTGCTTGAAGCCGGCCGAAAGCGT 20181 30 100.0 38 .............................. ATCGCCGCAGACGCTACGCAGGCAGAGACCACTGCCGT 20113 30 100.0 36 .............................. TACAACGACCGCGACTTGACCGACGAAGGCCAGGGT 20047 30 100.0 37 .............................. GGTACTTTCATCTACCTGCGCGACAAGGCGGGGTTGT 19980 30 100.0 37 .............................. TCTTCGGCCGCCGGCGGCACGATGCCGGACATAGCGT 19913 30 100.0 36 .............................. GCAAGAGGGGCATCGAGGAAGTCAACACGCCCTGGT 19847 30 100.0 38 .............................. TCCAGTCGCCAATATAGTCGTCGTACAGTCCGACAGGT 19779 30 100.0 36 .............................. AGGCCGAAGCGCCGTGACTTGAAGACCTTGCCGAGT 19713 30 100.0 36 .............................. TATTACGGTTCTGGGTGCAGCATCTGCGGGGGTGGT 19647 30 100.0 36 .............................. TGGGGCGAGCTGCGCGGCAATCCGGCCGACCCCAGT 19581 30 100.0 35 .............................. TCGATCCGTCCTACGCGCTCGCCTACGCGGTTGGT 19516 30 100.0 36 .............................. AACTATGAGGTCGTCGAGGTCAAGACGGTGACCGGT 19450 30 100.0 39 .............................. CGGACGCCCTTCGGGCCGAGGAGGATCACCTTGAACCGT 19381 30 100.0 37 .............................. TTGCGCGGCTGGCCGCCGGCGGCCTGGCTGTGGTGGT 19314 30 100.0 36 .............................. ATGGTTACCTCGTGAAAGCTGCACCTGAGCTGCTGT 19248 30 100.0 35 .............................. ATCTGCCACCGCGCCGAACTGGTGCTGCAGACCGT 19183 30 100.0 36 .............................. GCGTGCTGCGCGAAACCCCGAAAGCGCACATCGTGT 19117 30 100.0 36 .............................. TATCGCCAGTGAAAACCAGTTTCCACACTGTTCCGT 19051 30 100.0 37 .............................. AGCGCGAAATCCCCGTTGGGAGAGAGTTTCACCCTGT 18984 30 100.0 36 .............................. CGCATCCGCGTCGCTTAACCCAACCAGGCGGGGCGT 18918 30 100.0 38 .............................. TACCGACGCCGGATGTGCCGGACAGGGATGGCGGAGGT 18850 30 100.0 36 .............................. TTTTGCTCGGCTACGACTGTTCGCTCGAGCACGGGT 18784 30 100.0 36 .............................. CAAGTCAGGCCGAAGAAAGAGACGATATAGCTGGGT 18718 30 100.0 36 .............................. ACCTCGCCGGTGCGCAGATCGAAAACGCCGGTAGGT 18652 30 100.0 36 .............................. GGCTACACGTTCTTCGCACCCTCGTTAGAGGAAGGT 18586 30 100.0 36 .............................. GGTAGGTTTCATAACTGAAAATCTAGAAAACCGTGT 18520 30 96.7 35 ...............T.............. ACGGTCGCGCTGGCGGGATGCGCCGGCCAGGTGGT 18455 30 93.3 0 .......................G.....G | ========== ====== ====== ====== ============================== ======================================= ================== 54 30 99.8 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAATTCTCTAGCTGATTGATTTATAAACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAGAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTGGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGGAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGGCTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCAAGGGGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGCTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCGGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACTGTTGGTCCTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 94715-94266 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWSR01000004.1 Pseudomonas aeruginosa strain PAC117A IPC134_4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94714 28 100.0 32 ............................ TACTTGGGTAAGCTGGACGCCGAGGGCGCAGC 94654 28 100.0 32 ............................ TTATCGATTACCCACATTTTCTCCCAGCCCAC 94594 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 94534 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 94474 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 94413 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 94353 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 94293 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGTGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //