Array 1 106885-106550 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLC01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H54 isolate H54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106884 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106823 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106762 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106701 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106640 29 96.6 32 .....T....................... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106579 29 96.6 0 A............................ | A [106552] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131323-130258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLC01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H54 isolate H54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131322 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 131261 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 131200 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 131139 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 131078 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 131017 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 130956 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 130895 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 130834 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 130773 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 130712 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 130651 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 130590 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 130529 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 130468 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 130407 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 130346 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 130285 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCGTAAAGACGACGGGCGCGTGGTGGTAGAAGGCGTGGGTAATTTGATGCACCACATCGCCCGCTGCTGCCAGCCGATTCCGGGGGATGAAATTGTCGGCTTCATTACTCAAGGGCGAGGGATTTCCGTGCACCGGGCCGACTGCGAACAGCTGGCGGAACTGCGCTCCCATGCGCCGGAGCGGATCGTAGAGGCGGTATGGGGCGAGAGCTACTCGGCGGGATATTCGCTGGTGGTGCGCGTCCAGGCCAACGATCGCAGCGGCTTGCTACGCGATATCACCACCATTCTGGCTAACGAAAAAGTCAACGTGCTGGGCGTCGCCAGCCGCAGCGACATTAAACAGCAGATCGCCACCATTGATATGACCATCGAGATCTACAACCTGCAGGTGCTGGGCCGGGTGCTCGGTAAGCTGAACCAGGTGCCGGATGTGATTGATGCACGGCGACTGCACGGGGGGTAAACCCCAGACAGTAATCATGTAGCGGCTTTGCTN # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //