Array 1 36893-34054 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSYU01000027.1 Marichromatium gracile strain YL28 scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36892 29 100.0 32 ............................. TATCGTCACGCCATTGAGGAGATCTGCGACGC 36831 29 100.0 32 ............................. CCGGTCGATGTCGAGGCGCCGCGCCGTGATGC 36770 29 100.0 32 ............................. ACAACACGAATTGCTGTGCTCAACGCGCCAGT 36709 29 100.0 32 ............................. TCGTCGACGTTGGTGATGCCCATGCCATCCAG 36648 29 100.0 32 ............................. TCAGTGAATCCGGGTTAGTGGCGGCGCCTGAG 36587 29 100.0 32 ............................. TCATTGATTTTATTGAAGTTTTTTAAAAGTGC 36526 29 100.0 32 ............................. GATTGAACCCCTCACCCACCCCCGCGAGCTAC 36465 29 100.0 32 ............................. GACGAATTGCGAGTGACGCCTACCCTGCTCGC 36404 29 100.0 32 ............................. TCCCCCACATTAATCCCGAGCACTTCGCGCGC 36343 29 100.0 32 ............................. ATCCGGTTCTGGGGGGATCTCCCCCCGGATGC 36282 29 96.6 32 ............................T TAATCATCTGGGTCTACTGGCGAGTGAGGTGA 36221 29 100.0 32 ............................. AGGTCGATGGCGAGTTGGTGGAACTTGACCGC 36160 29 100.0 32 ............................. ACTATCACATGGAGACGATAATGCGCGCCATT 36099 29 100.0 32 ............................. ATTGCGCAGAGGTTAGGAATTAGCGTGTCAGA 36038 29 100.0 32 ............................. CGAGATGGGTGTGTACACGGGATGGGGTTATG 35977 29 100.0 32 ............................. ATCGAGCAGTACACCCACCCGAACCGCAGCGG 35916 29 100.0 32 ............................. GAGTTTGATTACGCTGAGTCGAAGCGAAAGAC 35855 29 100.0 32 ............................. TGAGCCAACAGGAAGCCGCGCGCCGCCTTCGC 35794 29 100.0 32 ............................. CACTCTGGATTCAGCAGATTTCGCGCGTGCTG 35733 29 100.0 32 ............................. GGGTGGACGTTCCCCGCTTCGTCCGTCAGGCA 35672 29 100.0 32 ............................. GGTCTTGTGTGCCGTGGACAACGAAGCTCTCC 35611 29 100.0 32 ............................. GTGGCGACTGGGATGACGTGCGCCGCAAGCAT 35550 29 100.0 32 ............................. CCGTCGACGATCATGTAGCTCGTCTCGCTCTC 35489 29 100.0 32 ............................. AAAGCGCCGCATCTGTATCGCTACGTCGGGAA 35428 29 100.0 32 ............................. GTCGTGTTCTCCGACCTGGAGGCGATCTTTCA 35367 29 100.0 32 ............................. TCGCCCTGGCTGGTGCGTGTCACGGATCTGGC 35306 29 100.0 33 ............................. TCCGTCGAGGTAGTACGGCTTTTGGACGTAGTA 35244 29 100.0 32 ............................. GCCGAGGCGGTCGCGCGAGCACTCCGCCTGGC 35183 29 100.0 32 ............................. TATCTGCCCGTCGTCATCGACGGCCGGATGAT 35122 29 100.0 32 ............................. ATGCGAATGACCTGCTCCTCGCTTTCGGTAAG 35061 29 100.0 32 ............................. CTGATGTGGATGCAATGTTTCTCAGCGAATAT 35000 29 100.0 33 ............................. CTATCTTCACCCTCAACAGCCGCCCCAAGCGGC 34938 29 100.0 32 ............................. GCCACCCGCATGGCGACCAACCTCGCCAATAT 34877 29 100.0 32 ............................. ACCTCGCGACCGACGATGACCCCGTCGATCTC 34816 29 100.0 32 ............................. GCCACCCGCATGGCGACCAACCTCGCCAATAT 34755 29 100.0 33 ............................. TCGACCGGCAGTGCCGAGGACTACGCCCGCGCC 34693 29 100.0 32 ............................. ATCACGATCCATGTCGCAGACCAGCGCTCCGC 34632 29 100.0 32 ............................. GCATCGTCAACCTACAGCGGATCGACGCGACC 34571 29 100.0 32 ............................. TCGCCTCTGGGATGTCGGTGGCAATCTCATTC 34510 29 100.0 32 ............................. GAAGCATGGCGGAGATGGTGGAGCCGGTGAGC 34449 29 100.0 32 ............................. GGCACCATCCAGCAGCTGTCCCAGGCGCTCGC 34388 29 93.1 32 ..........................AT. TCCTTGTTTTTATTGGACTTTTTATTTCATGC 34327 29 100.0 32 ............................. GTGATCACTCACGATTCGCTCGCTCTGCTCGC 34266 29 100.0 33 ............................. CTCGCCAGCGCCCGCCCCGGGCTCGCATTCAGC 34204 29 100.0 32 ............................. GTTCTCGATGGGCAGTACGCCGGACGGGGCCT 34143 28 86.2 32 ...........A..C.........C-... CCGAACGCGCGGCGTGGTCGTCCGGGTATCCT T [34117] 34082 29 82.8 0 ...........A..C.........CC..C | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.1 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : AAGCTGATCCCGATGATCGAGGACGTCCTGGCCGCCGGCGAACTCGCGCCACCACCACCGGCGCCGGAAAACATCCCACCGGCCATCCCCACCCCGGAAGGACTCGGCGATGCTGGTCATCGTCACTGAGAACATCCCACCCCGGCTGCGCGGACGGCTGGCGGTGTGGCTACTGGAGATCCGCGCCGGCGTCTATATCGGCACCCCCTCCAAGCGGCTGCGCGAGTTCATCTGGGAGCAACTCCTCGCCGGCGTCGAGGACGGCAACGCGGTCATGGCCTGGAGCACCAACACCGAGTCCGGCTACGACTTCCGCACCATCGGCGAGAACCGGCGCATCCCCGTCGATTTCGACGGACTCAGACTCGTCAGCTTCCTCCCACCACCCCCATCGGACCCTCCACGATGATCGAAAAACCAACCCCTTCGATAGACCTCGAAAATCTGGTAGATTCAGAGACGCGTATTTTTCTTCGCTGAATCATACAAATACGCGAAGA # Right flank : AGCTCACCGCACCACCCGCCAGCGCCGCCACCACTGGTCGCCCCACTCGAACAGGGCGAGGCCGGCGAGGATGGTGAGGCTGCCGAGCCAGATCCTCGGGGTCAGCAGTTCGTCGTTGACGAGGTGGCCGAGGAGCAGGGCGAGCACCGGGGTGATGAGCGGGATCAGTGCCACCCGGCTCGCCTGCATGTGGTGGAGCACGAAGTAGTAGAGGATGAAGCCCAGGGTCGAGCCGAACACCGCCAGGTAGAGGATCGACCAGAGCGCGCGCGGCGGTAGCGTCGCCGGCGGCGCGAAGCCCTCGCTCAGCCCCCAGCTCAGCAGGAACAGCGGCACCGCGATCAGCAGCGCGCCGGTGGTGGTCTCGACCGGGTGCAGGCGCGCGCCGATGCGCTTGATCCAGACCGCGCTGGCCGAGTGGATCACCACCGTCACCAGCACCCCGGCCATGCCCAGCAGCGCCTGACCGCCGAGCGCCAGCCCCTGGGCGAAGATCAGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34336-32369 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSYU01000044.1 Marichromatium gracile strain YL28 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 34335 37 100.0 35 ..................................... CGGGGGACATGTACATGGCTGTATCTCTGTGTCAG 34263 37 100.0 36 ..................................... CAGCGGGTCGAAGCCACGCCGAGGGCCTCGCTTGAC 34190 37 100.0 34 ..................................... CACCTGCCGTTGGGTTGCAGGCGTGCAGTAGGGC 34119 37 100.0 34 ..................................... CTGCTGACCTATGGCATCCGGCGCGTGCAAACCT 34048 37 100.0 34 ..................................... GCACCGCCCGCCGCCAGTGCGGTCAGTAGGAGGG 33977 37 100.0 36 ..................................... CTTGGTTGTGAGCGGCAAGGCTGCTGTATGCAAGCG 33904 37 100.0 33 ..................................... CGGGAACTGGCCCTGGCGGTCGTAAGCGTGGAC 33834 37 100.0 36 ..................................... CATGGGCCGGGAGTCTCAGCGTGCGCGTGGTGAGCA 33761 37 100.0 34 ..................................... GTCTTTTGCCATTGGTGGCTTCCTCCGGTTGTGT 33690 37 100.0 34 ..................................... AGATCGCGGTAACGCGCGCCGGGGTCAGCGGAAG 33619 37 100.0 35 ..................................... CCGGGAAGGCTGCTGGTGATGGTGACGCCATCGGC 33547 37 100.0 36 ..................................... CACGTTTTCGAATGCGATGCGGTGGCTCGTGTATGC 33474 37 100.0 35 ..................................... GGGTTGTAGACTGCGTAGTACATACTAATCTCCAA 33402 37 100.0 35 ..................................... ATGTGTAGGACTACCTGTGGAATAAGCGTGTAAGT 33330 37 100.0 34 ..................................... GCGGTGAGGCCGGCGCGGGCAGCAACGACCAGGG 33259 37 100.0 34 ..................................... TTGGCCACCCACGCTGCAGCGCCAGAACTGCAGC 33188 37 100.0 36 ..................................... CGGGTTATAGATCGCGTAGTACATGCTATTACCCTC 33115 37 100.0 33 ..................................... TCGCGTAGGGGAAGTCGTCAATGAGGGTCGGGC 33045 37 100.0 34 ..................................... TGGCCAGGATGCGCCGGAGCGCGTCCCTGGCCGC 32974 37 100.0 35 ..................................... TATCGATGATGCCCATGGTGCGCCCCTTATATTCT 32902 37 100.0 33 ..................................... CCGACCCATTCGGAGTCCCCGGCAAGCGGGAAG 32832 37 100.0 33 ..................................... TTGCTCACGGTCGGGATCCCCCCGACCGGCGCC 32762 37 100.0 36 ..................................... CCAGCGCCATATTCTCAGCCATTGCTTTCTCCATTG 32689 37 100.0 33 ..................................... CCCGTGCTACCGAGCCAGACGGCTCGATGGTGT 32619 37 100.0 35 ..................................... GCTTACGCCTTCACGAGGCGCTTAACCCCCCTGAT 32547 37 100.0 35 ..................................... GATCCCCCCGACCGGCACCCCCTCGCTCTGCTCGA 32475 37 100.0 33 ..................................... GCGACGACGCACCGCCCGGCCGGGGTACGATAG 32405 37 94.6 0 ......................G......G....... | ========== ====== ====== ====== ===================================== ==================================== ================== 28 37 99.8 35 GTCCGAATCAGAGACCCGATCTAAAGGGGATTAAGAC # Left flank : CTGCACCGCTGGCTCATCCACGAGACCTGACCGACGATGGCTCGCAAGCAACTCTTCCTGCTCGCCTATGACATCGCCGATGACGGTCGGCGCAACCGAGTGCACCGCGAGGCCACCGACCTGGGCATCGCGCTGCAATATTCGGTCTTCCTGATCCCGGCGACGGTCGCCGAGATCGATCGGTTCGTTGTACTGATAGGAGGGATCATCGATCAGCGTGCAGACGATATCCGGGTTTACCCCCTGCCTTCCCGACTCGAGGTCTGGCGTCGAGGGCGCCAGTCGCTTCCCGCCGGCATGGCGTTGGAGATGGACGGTCCCTTGGGCGATGCCGTGAGCAGACTTGTCGGGAACCGTGAACTCGATTAAGTTAGAAGACGTTCGAGCCGCCTGTGGAGCCTTCGTCCCTTGCCCTTCTGCACGTCAACTTTTTCTGTCACGAAAAAATTGCGAACCGCCCTTGTAGGTGGTTGTTCTGAAAGGCTTTCTGGCAACTGGCA # Right flank : ATATTCAGACCGCGTCGCGGGCGTCAACGTGTGCATCGGTTACACGCCTGTGGTGTCAATTATTTCTCTGGTGATAGCGCCAGTATCGGACCCAAACGTGAGTCGGCGAACCGCGTCAATGACACGGGGGCCACACCGGAGCGAGGCCGCCGGAGTCATGATCGACCCCGGCTGACCATACATAGCCATGTGGATGGTTTGTGCAATACGGTTCGCACGGCGCGCCGGTGTATCCGGGCGCACGAAGGGAGTGCTCACGGTTAGCTTCTAGCTGGTTGTGGTGGTCGATGATAGGTGCGTCAGGCGTCGTGCATCATGCGACTCAGGGCCACAAGGAACAGCGCACTATGTCCATCGTCCGGGAAGATAAGGAACACCGCTCTGGTGTCCTCTGGCTGGGCTTGGGACCAGCTCAAGTGGGAGGTAGTCCGCTGGGCGCACTGCTGAGACCAGATACCCTGGCGACTACTCCGGTCGGGTGCGAGTTGGTAGTTGCTAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATCAGAGACCCGATCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 13387-11917 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSYU01000053.1 Marichromatium gracile strain YL28 scaffold38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 13386 37 100.0 35 ..................................... AGGTCGACGACGAGCTGCCGACTGAGCGCCGAGAC 13314 37 100.0 35 ..................................... TGATCGAGGACGCTGTAACGGTTGATGCCGTCCAG 13242 37 100.0 35 ..................................... CAAGCCCGCTGCGGATGCGCCGCTCAATTGCAACC 13170 37 100.0 35 ..................................... GAGCTGTCTGGGACATGTGGATCTTCCCTGGTGGG 13098 37 100.0 36 ..................................... ACTGACTTCACCCGCGTCGGCCAAATGGTGGAATGG 13025 37 100.0 34 ..................................... GACGAGGCACACCCCAAGCACGTTCGCCCAAGAC 12954 37 100.0 33 ..................................... TCGTCCTCGTCCTCCCACTCGAATGTGTCCGCG 12884 37 100.0 34 ..................................... CAATTTCTTCCCCGTCGTCGTTGTGCTGGACAAA 12813 37 100.0 36 ..................................... CGAGTTCCAGCAAGAGGGAACCCCAGCAATAACGGT 12740 37 100.0 35 ..................................... GTTGTTCAGGTTGTGCAGCGGGTTGGTGGTCATGG 12668 37 97.3 33 ...............................G..... CCTTCTCCCTGCGGGCGCCCCCAGCCTTGGGGG 12598 37 100.0 34 ..................................... GGTTCCTCGGCACCCCGGCACCTTTGCAGTGTGC 12527 37 100.0 35 ..................................... GAACCTATGCCTTGGTAGAACCCTGATTGGGGGGT 12455 37 100.0 34 ..................................... GATGATCTCGACGCCGAGGGCGTCGAAGATGGTG 12384 37 100.0 34 ..................................... GCTGGCGGCGCGGATGCCCGGGTCGCGGGCTTGC 12313 37 100.0 35 ..................................... TCGCGCAGGTAGTCGAGGCCGCGGCGCCCGTCGAG 12241 37 100.0 35 ..................................... GCGCGGCGCGCTACGGAGTCAGTGCGCCGATACCG 12169 37 97.3 35 .C................................... CCAACTGAACCATCGGGACCCCTGGCCGGTGGTCG 12097 37 100.0 35 ..................................... GATGCGTAGGGCACATACACTCCAGGGAGTTCTTC 12025 37 100.0 35 ..................................... AGGCGGTAACCCGGCCCGTAGAAGATCCGCAGTTC 11953 37 91.9 0 .......C.....................G...G... | ========== ====== ====== ====== ===================================== ==================================== ================== 21 37 99.4 35 GTCCGAATCAGAGACCCGATCTAAAGGGGATTAAGAC # Left flank : TCAATCTCTCCTGCGACGACTTCGGCACCGGTTACTCGTCGCTGGTGCAGCTCTATCGCATGCCTTTCTGCGAACTCAAGATCGATCGCTCCTTCGTGGTCGACTGCATCGACCAGCCAGAGGCGCGGGTGATCATCCGTGCCAGCATCGAACTCGGCCACAACCTCGGCCTGACCGTCTGCGCCGAGGGCGTGGAGACGCAGGATGTGTTCGATTATCTCCATGCTCAGGGCTGCGACTCCATCCAGGGCTATCACGTCGGCTACCCGGTGCCGGCGACCGACCTGCCCGAGCTGGTCCGCGAGGCCTCGCGCCGACTGCTCGAGATCGAGTCTTGAGTGGGGCGGTGGACAACGGGCATCGGGTCGCTTACCTTGAGTCCCTCGGACCCTTGGCACAGCCTCGGAGAGCCACGCGTGCACGTCAACTTTCCGGTTGCCGGGATTTTTGCGAACCGCACTCGCAGGTGCTTGTTTGGAAAGCCTTTCTGGCAACTGGCA # Right flank : ACGACTTGCTCGCGCAGTGCGCGTTGCTCGGTGGTCCAAACCAGAGGTCAGAGATGGCAGGTCTATCCGTGAACACTCCCTGCTTGTGCGCCGCCCCTGGGCGGTTTTTTTCTGTCTGGACATGATCGAAAGTGGCCGGGAGACGGGTCCGTCTGACTGTCGGCGAGGGTGGGATGGTCAGTCGTTGGCGAGGGAAGGGGTGCGCTGACTCAGCTCCTCGACCAGCCGGTCCAGCGCCATCGCGCGTGATCCCTTGACGAGGATGCAGGTCGCTGGATCGGTGTCGGCGAGGATCCGTGCCGCCAGTGCCGGCGGTTGATTGTGGTGATGTTCGACCTGGGCTGATGGTGTGGGTGCGGCGGTGGCGGCGAAGCCGGGGCCGATGAGGATGCAGCGCTCGGCGCTGGCGGCGGCGAGAGCGGCGATCTCGCGATGGGCGGTGGGCGCGTGCGCGCCCAGCTCGTGCATGTCGCCGAGCACGGCGAGGCGCGGTGCCGGAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATCAGAGACCCGATCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1986-66 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSYU01000045.1 Marichromatium gracile strain YL28 scaffold30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1985 29 100.0 32 ............................. GCACCCCGCGCACCTGGCCGGATGGGCGGGCG 1924 29 100.0 32 ............................. GATTGATGGCTTAGTCGTTGATTCCAAAGGAA 1863 29 100.0 32 ............................. GTGAAAAACCCGTTACGATGCCCAACCGAAGC 1802 29 100.0 32 ............................. CGAACACCAACCGCGCCCCATCGGCGCACCAT 1741 29 100.0 32 ............................. AAGCGCCTCGCAATCCAATACGCCGAGATCAG 1680 29 100.0 32 ............................. GAGGTCCGGTGCATAGCACTCGATCATGTCCC 1619 29 100.0 32 ............................. ACGACGAATCGACATGGGCGCACCGCCACGCA 1558 29 100.0 32 ............................. TGCCAAGGCGGCCAGCGACAGCGCCATGGACA 1497 29 100.0 32 ............................. CTGATCCCCGCCGAGATCGAGCCCGACGCCTA 1436 29 100.0 32 ............................. CCGGCGAGCCTGCTCGATGTCGATGGCCTGGT 1375 29 100.0 32 ............................. GCCTGCTCACTCGCCATCGACCCCACCCTCCA 1314 29 100.0 32 ............................. ATCGCCCACTCGTGCCGCCCGGCGCGGATCGG 1253 29 100.0 32 ............................. GGAGCGGAGACCATGATTCAGAGCAGCCTCGA 1192 29 100.0 32 ............................. AGAAATTTACTTCACGCGCACACACACACACG 1131 29 100.0 32 ............................. TTTTTTGAACACTTTGGTCATGTCGTGTGCTC 1070 29 96.6 32 ............................T TTCGAGGTGCAATATTGGGGTCGGACTATTGA 1009 29 100.0 32 ............................. ACGATTGTTCGGCCAGCGATCGTCACACCGAT 948 29 100.0 32 ............................. AGCGCCCAGACGCGATCCATGTCCTCGCTGCG 887 29 100.0 32 ............................. CGCATATAGTCCTTGTGGTTTGCCCAAACGTG 826 29 100.0 32 ............................. CGACCTCCTGTATCGCTCTCTCAGCTCGCCAC 765 29 100.0 32 ............................. ACTCAGCCCCTACTAGTACTACCTGTACCTAT 704 29 100.0 32 ............................. GCGCGTGTATGTGTGCGTGCGTGCCCGAGCGT 643 29 100.0 32 ............................. CGGATATTACTCGGGCAACGAGATCCGCCGTA 582 29 100.0 32 ............................. TGGCCGTAGGCGCGGGCGTAGTCCTCGGCGCT 521 29 100.0 32 ............................. TGGATGTAAGCATCGGCGGGCCATGCGCCCGC 460 29 100.0 32 ............................. AGATAGCCCCCGAGCAGGCTGCCGCCGAGCGA 399 29 100.0 32 ............................. GGCAACGCCTGGCGTGGCGCGCTGCGCGACCA 338 29 100.0 32 ............................. GAGCGCATCGGCACTGAACTCGGGATGGACCC 277 29 100.0 32 ............................. GCCCGAGCCAGCCCGACATAGCCGCCCGGCTT 216 29 100.0 32 ............................. GGGCCGGGCCGATCACGGACGCGCAATAAATG 155 29 100.0 32 ............................. GCCTTACATATCGCGATCGAGGTGAAAGGCGA 94 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTTTCCCCCGCGCTCGCGGGGATAGGCCC # Left flank : GCCAAGAAGGCGAAAACAGACTCCCAGACAATCGATAGGCTCGTCAGGCGTGAAGCGGCTACCGTGTTCCGCAAACAGGGAGTCATTCCTACGATGATCGAGCGGATCAAACAAGTTATCCGCATGGAGGAAACCGATGCCGCTGGTCATGGTCGTGACTCGTGACGTAGCCGATCGATATCGAGGGTTCCTGGGATCGCTGATGCTAGAGGTCGCTCCAACGGTCTACATTTCGCCACGAATGAACCCCGGAGTTCGCGTTCGAACCTGGAATGTTCTCAGTAATTGGCACAAGAACGAACCACAAGGAAGCATCGTTATGGTTTGGCGCGATGTAAGCGCGACAGGCGGAATCGAGATCGCCACGCTCGGCACACCACCGAGGGAGCTAATCGACGTCGATGGCCTGTGGCTAGTGCGCAAATCATCGTAAAAAGGCTCTTTAAAAACAAAGCCCAATCACCGCTTTTGCAATTAATTACAAAGACTTAAGCAAAAGA # Right flank : CGTGTACTTTAGAGGCTCTATCAAAAAGCCGTTCGCGTTGTCAGAGGCGTCGAGATCACGCACACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCTCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 608-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSYU01000010.1 Marichromatium gracile strain YL28 scaffold107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 607 37 100.0 35 ..................................... TTGCGATCGAGCCCGAAGGCTCGATGGTGCGGATC 535 37 100.0 35 ..................................... TTGCGATCGAGCCCGAAGGCTCGATGGTGCGGATC 463 37 100.0 33 ..................................... CCCGTGCTACCGAGCCAGACGGCTCGATGGTGT 393 37 100.0 33 ..................................... TTGCTCACGGTCGGGATCCCCCCGACCGGCGCC 323 37 100.0 35 ..................................... CCGACTTGCTCGCTGAGGCGGTTGGCGAGCATCTC 251 37 100.0 34 ..................................... GATGGCGCCAGACCACCGCGAGGGCGTCGTGGGT 180 37 100.0 33 ..................................... CCCTCATCGTTCCCGCTGAGGTGCCAGCGCTTC 110 37 100.0 36 ..................................... CCAGCGCCATATTCTCAGCCATTGCTTTCTCCATTG 37 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 100.0 34 GTCCGAATCAGAGACCCGATCTAAAGGGGATTAAGAC # Left flank : CCATTGCTTTCTCCATT # Right flank : C # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATCAGAGACCCGATCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 78-1814 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSYU01000074.1 Marichromatium gracile strain YL28 scaffold57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78 29 100.0 32 ............................. ATGGCATGAGCTGGCCGATAATGAGTGTGAAC 139 29 96.6 32 ............................A GTGCATGTCATCCCCTGAAGACAAGTTTTTCA 200 29 100.0 32 ............................. CACCCTGCAACCCGCGCCCGGCGCACCGCTGC 261 29 96.6 32 ............................A TAGCCATCCACCCCCTACCCCTCACATGCAGA 322 29 100.0 32 ............................. GAAACATTTCGCACCACAGGGAGACCACCATG 383 29 100.0 32 ............................. TCCGGGGCAGCCTGCTATATTGGCGTCAACAA 444 29 100.0 32 ............................. TTGTTGTGCAGCCGTGACCAGATCTCGGCCAG 505 29 100.0 32 ............................. GGATGGAGTCGGCGAGATGGCCGCGATCGGTG 566 29 100.0 32 ............................. GCAAAGGGTCGCTCCTGGGGCGGCTCGTCAAA 627 29 100.0 32 ............................. CGTACGCCAGGAATGCAGAGCAATAGTCGGCC 688 29 100.0 32 ............................. GGGCAGGGGCCGGGATACGGGGTGAAATCGAT 749 29 100.0 32 ............................. GACCAACGCCAAGATGTTTGCGGCATGGCTTT 810 29 100.0 32 ............................. CCGAGGGGGATCAATGGGTTCCTCGAAATGAA 871 29 100.0 32 ............................. ACGTCGCGATCTGCGCGCGCCTCGAAACCGAG 932 29 100.0 32 ............................. TCGTGGAATGGCGGCTCCTGCCCGGCGGTGAG 993 29 100.0 32 ............................. AGGCCGCTGACGAAGCCGCCAAGCTGGCCACC 1054 29 100.0 32 ............................. CGAGCGCCTGAATTTGCTCCTGCGCTTGCCTG 1115 29 100.0 32 ............................. ACTCATCCCTTGTTGGCACCGGAAGCCCGCGC 1176 29 100.0 32 ............................. ACCCGTAGATCGCGGCATAGGGCCCCTGGGGC 1237 29 100.0 32 ............................. TCGACGCGCGGCGTCTTGCGCTGTCGCATCTG 1298 29 100.0 32 ............................. CGGATGTGGCGCCACGTCCGCGGGCGAGTCGT 1359 29 100.0 32 ............................. TTCCTCATCACTCTGGAGGAGCTGCAGGGCGG 1420 29 100.0 32 ............................. GAGATGCACGGAAACGAACGTCGGTACGTTCT 1481 29 100.0 32 ............................. CCTTAACCGCTGGGTCCACGTTCAGGTCGAAT 1542 29 100.0 32 ............................. TGAGCTGCCCCTATCCCCGGCGCTGGTGCGCG 1603 29 100.0 32 ............................. TTTCGGTCGGACTCTCGAATCTTTGTGATCTC 1664 29 100.0 32 ............................. ATTAGCACTGGATGCTACGCTCGCCGCTGTGT 1725 29 100.0 32 ............................. CCCAAGGCCGAAATTAATGTCTTTGCTCATAA 1786 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GTTTCCCCCGCGCTCGCGGGGATAGGCCC # Left flank : CTCATTTGCTGGAATGCTTTGGAGTGGGCGTAGGGCTTTTTGATAGAGCCTCTTACTGTACTGACCCACACACACACG # Right flank : TGAGGTTCCCCCGAGATTCGCCGCCTACTCGAAGCGTTGCTATGGCACGGACGCGCCCCGCCTGAAGTCATCATCGCCTGGCCTGATTGGCGATAAAGGCATAGGGCTCGTGCGAAAGCTTGCCACTATCGAGTACACGGGGAGTTGGACCACCGCGAACATGCGCGGCTGTAGCAGTAAGGGTTATGTCTCTCCCCATCGCTCACAGCCCCCCACCCGCCTCCACCTGCCCCGCCCGCAGCAGCGGTTCGAGCTGGTCGGCGGGGAGCGGGCGGCAATAGTAATAGCCCTGGGCGACGGTGCAGTGGTGGGCGAGCAGGAAGCGGCGCTGGGCCTCGGTCTCGACGCCCTCGGCGATGCGCTCGAGGCCGAGGTTCTCGCCGAGGCCAATGATCGCCTTGAGGATGGCGATGGCCTGACGGGGGAGTTCGGGACGCTCGTCGATCTCGGCGAGGAAGGAGCGGTCGATCTTCAGCGAGTTCACCGGCAGGCGGTTGAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCTCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //