Array 1 433196-434321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTM01000018.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N29307 N29307_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433196 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433257 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433318 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433379 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433440 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433501 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433562 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433623 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433684 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 433745 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 433806 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 433867 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 433928 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 433989 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434050 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434111 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434172 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434233 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434294 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450580-452243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTM01000018.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N29307 N29307_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 450580 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450641 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 450702 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 450763 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 450830 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 450891 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 450952 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451013 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451074 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451135 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451196 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451257 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451318 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451379 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451440 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451501 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451562 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451623 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451684 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 451745 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [451787] 451787 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 451848 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 451909 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 451970 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452031 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452092 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452153 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452214 29 96.6 0 A............................ | A [452240] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //