Array 1 990383-991755 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030209.1 Salmonella enterica strain SA20044414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 990383 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 990444 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 990505 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 990566 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 990627 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 990688 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 990750 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 990811 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 990872 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 990933 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 990994 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 991055 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 991116 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 991178 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 991239 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 991300 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 991362 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 991423 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 991484 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 991545 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 991606 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 991667 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 991728 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1008015-1010975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030209.1 Salmonella enterica strain SA20044414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1008015 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 1008076 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 1008137 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 1008198 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 1008259 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 1008320 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 1008381 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 1008442 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 1008503 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 1008564 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 1008625 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 1008686 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 1008747 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 1008808 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 1008869 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 1008930 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 1008991 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 1009052 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 1009113 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 1009174 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 1009235 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 1009296 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 1009358 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 1009419 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 1009480 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 1009541 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 1009602 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 1009663 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 1009724 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 1009785 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 1009846 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 1009907 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 1009968 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 1010029 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 1010090 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 1010151 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 1010212 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 1010274 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 1010335 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 1010396 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 1010457 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 1010518 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 1010579 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 1010640 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 1010701 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 1010762 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 1010824 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 1010885 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 1010946 29 96.6 0 ............T................ | A [1010973] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //