Array 1 65472-68994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNO01000015.1 Prevotella denticola DNF00960 contig015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 65472 37 100.0 38 ..................................... ATGGTGAGTTTATATACCTCGACAATAGCGGCGTATAT 65547 37 100.0 40 ..................................... ACGAGAGAGCAAACAAGATGTTGGAGAAACTCGCTGATTC 65624 37 100.0 35 ..................................... TCAAACAAATATTCAACTAATAAACTAATAAAATT 65696 37 100.0 35 ..................................... CTTTAAGACAATGAGAACAAAAAGATTTTGCGTGT 65768 37 100.0 38 ..................................... ACTTGCTTAAAGCGTGCGTGGCAGCTTGCTAAGCTCGC 65843 37 100.0 37 ..................................... CAGACGATAAAGAAATCTTTGATTATACAAGATACGA 65917 37 100.0 38 ..................................... ATGGTGTTAACAATGCGATTATTGGTTTTTCGTCTTGT 65992 37 100.0 37 ..................................... ACCGCAACCTATTAAGGTTGAGAATCAGGATGCCCGA 66066 37 100.0 34 ..................................... TATTAGTTTTGGCATGGAGAAAATTCTGAATTTG 66137 37 100.0 33 ..................................... AAACATTAAATCATTATCAAAATGAACATCTTA 66207 37 100.0 34 ..................................... GTGAGCTTTACACCTGTCCGTTTGTATGGGTTAA 66278 37 100.0 38 ..................................... CTTACATCAAAGTACAAGAGCTTTTGGAGAAAGCTTAT 66353 37 100.0 36 ..................................... CCGAAATAAATTTAAACTAAAGCTGACCTATCGGCA 66426 37 100.0 33 ..................................... TCAAAGCCTTTCCCGATAAGTAAGGCAAAATAG 66496 37 100.0 32 ..................................... TCCGCCTTTATGACAGATATGACAAATACTTT 66565 37 100.0 39 ..................................... AGACCGCAACCTATTAAGGTTGAGAATCAGGATGCCCGA 66641 37 100.0 35 ..................................... CACTTGTGGATAAAGGCTTGATACATTCTCACAGG 66713 37 100.0 36 ..................................... TATTTCAGAACTCTCGGGAGGCGTATGTAACCGTGT 66786 37 100.0 34 ..................................... TTATCATTGAACCTGATGGCAGAGTTGCTGTCTT 66857 37 100.0 35 ..................................... TGACTAAGAAAATTATGTTTAATGACAAGTACTGC 66929 37 100.0 33 ..................................... ATATGAAACAATTTGATTTTGAAAATTTAGCCT 66999 37 100.0 37 ..................................... ATCAGGATGCCCGAAATTAATATTAAACTTAAGCCCT 67073 37 100.0 36 ..................................... AGAATATTAAACTAAAGCTGACCTATCGGCATGACG 67146 37 100.0 34 ..................................... GCCCTCGACAGCACGGTCAAGTCAGTTTATGAAA 67217 37 100.0 34 ..................................... AGCAGATAGACAACAATAGCACAGAAAGCGATTA 67288 37 100.0 35 ..................................... TGAAAGTTCTATCTTAAAGAATTTCAATGGCAAGA 67360 37 100.0 33 ..................................... TATAAATAAATTATGGAAACAATATCTGTTGAC 67430 37 100.0 34 ..................................... AAGAAGCAGCGTGCAGATATAGCAATTATATAGA 67501 37 100.0 38 ..................................... GGGAAATTTAATAAGAGGCTCAGAATTAGGAGCCTACA 67576 37 100.0 38 ..................................... CAAAGAGACTGTATAGCATTATGGATCTTTGCAAGAAA 67651 37 100.0 35 ..................................... TGCTGCTTGACAAGCCCTTGTCAGTTGGGTGGGGA 67723 37 100.0 37 ..................................... TCAAAGGCGAATACAATTACAACGAGTTACAGCAACT 67797 37 100.0 39 ..................................... CTGTGCACATGAACTGATTTCGGTAACCATAAATTGCAA 67873 37 100.0 37 ..................................... GAATAATTTTAGGTGGTTTCTTGATAGCCGTAAACAA 67947 37 100.0 34 ..................................... TTGGGCAAACATCAAGTTAAAAGCAGCTCTTAGT 68018 37 100.0 33 ..................................... AAATTTAATCAGGGGATCCGAACTAGGATCCTA 68088 37 100.0 35 ..................................... GATCCGAACTAGGATCCTACAAAACTATCGCCATG 68160 37 100.0 37 ..................................... CCAACATTTCAGAATCACTTCAAATCAGATAATTATG 68234 37 100.0 37 ..................................... TACAGGTGAGCGTTCTCAATATGAGAATAAAATCCTT 68308 37 100.0 35 ..................................... TCGATTAGGGTGTGCGTACGAATGAACTATTAAAC 68380 37 100.0 36 ..................................... AATACTCCTGATGAGTTCTTACGTGAAATAGAAAGA 68453 37 100.0 34 ..................................... CGATCCACGGGATATTCCCGGAACTGTCCGTGAA 68524 37 100.0 35 ..................................... GAATGTTCAAATAACGTGACAGGACAAAGAAATAG 68596 37 100.0 35 ..................................... CCCGAAATAATTTTAAACTTTAGCCCTCGACAGCA 68668 37 100.0 39 ..................................... ACCGACAAGCAAATAAAAGAAGCAAAGCACCGTCTTTAC 68744 37 100.0 35 ..................................... ACCGGCGGCTGTTCGAGCTTGTCGGCGGCGCGGGA 68816 37 100.0 35 ..................................... TCTCTGCTGCTTCTACGAATGCTGCTGTTGCGTCT 68888 37 100.0 33 ..................................... TTCGTTTTTCTGAGGGTCGTTTTGTTTGTTCTT 68958 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 49 37 100.0 36 GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Left flank : TTCTCCGAGATAGTCTGCCCCGCAGCCGGCATCACATCATAGAAAAAGCCGTTCTCCACTGCCGGACCGAAGCCGAACTGAATGCCCGGATAGAGTTCCTGCAATGCCTCGGCAAGCAGATGGGCAGAGGTGTGCCAGAAAGTGTGCTTGCCTTCTTCGTCATCGAACTTGTAAAGTGCGATGGTCGCATCTCCGTTGATGGGACGGTTCAGTTCTGTCGTTACGCCATTGACACCGCAAGATACAACGTCACGGGCGAGAGCCGGCGAAATACTCTCGGCGATTTGATAACCAGTCACACCCTGTTCGTATTCACGAACGGAGCCGTCTGGGAAAGTGATTTTAACCATACTACAAATTAGTTTTATAAATCAAATGTTGTGGCAAAGGTACTACTTTTAATTTATAAATCATAATTCTTTTGCCCCAAAAGGCTCTTCTTCCGAATCCTTATTCTAATATTGAGTGAAGGTTGAGGACGCAAAGCGAATTCTTGCAAA # Right flank : CCCTTGTCCATCTTTGACTTATTGCAACAATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 21250-21001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNO01000011.1 Prevotella denticola DNF00960 contig011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 21249 42 100.0 27 .......................................... CGCACTACAATGTGCGAAAGCATCGTA 21180 42 95.2 27 ..G.................................A..... CTCTCTACAATTGTGGAAAGCATAGCC 21111 42 100.0 27 .......................................... TGCGCTACACTCATCGAAAGCATGCCT 21042 42 90.5 0 T......GT...........................A..... | ========== ====== ====== ====== ========================================== =========================== ================== 4 42 96.4 27 GCCAATTTCTGTAACACTATTTGGAATGGTTACAGAGGTTAG # Left flank : GCCAATGGTTACAGAAGTTAGCGCGCTACAAAGTATGAATGCATTGT # Right flank : ATTGCTACAATCTTTGAAAGCAGCCTCTCCAATTGTCGTAACACCATCACCTATTATAATTTGATTAATATCATATTTGTACCATGGTAATCTGTTGCGGTATAAATAATCATTCATTTTCCCTTTTCCTGTAATGACCAAAACGCCATTATCAGTAAAGAGCCATTTTAGATTAGGTCCACAAGTACCAGAATTCTCGGCATTAGCTAATAAGTCCATGAGTAGGTCTATTAATAAGGTGTCAATTTGTTTCATATTAGTACTTTTATATAAACAATATTTTTGATTTATGGAAGTTCAAATGCAAAGATAAACAAAATTTGTTATAAAATGTTTTTCTATAAAAAGTTTATGTAGTATTTTGCTTCTTTTTTCAAGATAGTTATTGTTGAAAGATGGTCGTGATATTATGTAAATTAACTTTGCTGTCACTTCTGTCACCTCTTAGATGCTTATAATATGTTGATTATAAGTATGTAAGGCAAAGTGTTAAAAGTGAC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAATTTCTGTAACACTATTTGGAATGGTTACAGAGGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.90%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 36-3078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNO01000020.1 Prevotella denticola DNF00960 contig020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 36 47 100.0 30 ............................................... CAACAGAAGAACGAAATACCTCATCAAGAA 113 47 100.0 30 ............................................... GGGTTGCCGTTTTTGTCGCTTCTGTACTCG 190 47 100.0 30 ............................................... TCCATTGTTATATACAAGTGAACCATACTT 267 47 100.0 29 ............................................... AGCTTACGAAGATTAAAGGCTTCTATCGT 343 47 100.0 30 ............................................... AGAGCTCATTAATTACCTTAACCCTACCAA 420 47 100.0 30 ............................................... TACTATTAGAAAGATACAAGAACGTTTTAA 497 47 100.0 29 ............................................... GGGCTTTTGATTGGCGTCGCAGATTGTGC 573 47 100.0 30 ............................................... CCCTTTCAGGTGCATTTTATGTACTTGAAA 650 47 100.0 30 ............................................... CGTGGCTGGGCATCTCTGATGGCTCGCACC 727 47 100.0 30 ............................................... TATCGAAAGACTTAGCAAGAGGTTTCAATT 804 47 100.0 30 ............................................... TTCGCTTCAAGGTGCTAAACGCTGTGGGGG 881 47 100.0 30 ............................................... GTAGTTACACTCGGGTAGAACTCCGGCTCG 958 47 100.0 30 ............................................... AGTCGAGTATAAGTCTGATGTTTTTGTTCC 1035 47 100.0 30 ............................................... TCCTGCTTCTAATGTTTATACCTCTTCTGA 1112 47 100.0 31 ............................................... TATAAGATAAGGCAAGTACGTTCGCTCTATA 1190 47 100.0 29 ............................................... TTTAATCAGTGCCTCCTTATCTAGTACCT 1266 47 100.0 31 ............................................... TAGAACTTACTGCTACATATAACCCCACTGA 1344 47 100.0 29 ............................................... CTTTTCTTTGTCTTTACTTCATAGAATTT 1420 47 100.0 30 ............................................... TTATTCTGTTGAATCTTTGTCTGCTGCTGG 1497 47 100.0 30 ............................................... GAAGGTGTTTATCAGTTTCAGATGGGTTAT 1574 47 100.0 30 ............................................... TTGTCATTAAGCAGCTTCTTAGCTGCTTGC 1651 47 100.0 30 ............................................... AGAATTCAAAAGATTTTGCTGAGCCTGCGC 1728 47 100.0 30 ............................................... ACACCAGCAAGCGGAATGTCGCCTTTACTG 1805 47 100.0 30 ............................................... CGTCACCAGAAAGAATTTTATTCAAAATCT 1882 47 100.0 30 ............................................... ATCTGAAAACTGTTCAAGACCAACACAACC 1959 47 100.0 29 ............................................... TACTTTATGCACCGAGTTTAACATCCTGC 2035 47 100.0 29 ............................................... CCTTTTTTAAACTTCATGTCATAAGTCTG 2111 47 100.0 30 ............................................... CATCTTTGCAAACATATTTCGAAGCATAAG 2188 47 100.0 30 ............................................... TTGGAGCGTTACGCTAACTTTGACGTTTGT 2265 47 100.0 30 ............................................... TTACAGCAAGTAAACATGTGCGGGGCGTTT 2342 47 100.0 30 ............................................... AGTTGTCGGGATTGTTCGCATCCAGCTTCT 2419 47 100.0 29 ............................................... CTTCTTCTACGACACAAGGTGTTGCAGGT 2495 47 100.0 30 ............................................... TCCTTTCAGGAGATTCCTCACGCCGTTCTT 2572 47 100.0 30 ............................................... ACGCCAGGGATGTTCTCTGATGCCGACCTC 2649 47 100.0 30 ............................................... TCATCTTTTGCTCGACATCTTGCCCGTTCT 2726 47 100.0 29 ............................................... AGATAACGAGCCTACAGAGCTACCATCAG 2802 47 100.0 30 ............................................... CAGAAGGTGACTCTCTTAGAAGATAGTACG 2879 47 100.0 30 ............................................... AGAGAATTCAAACGAACGCCAAGAAATTTC 2956 47 100.0 29 ............................................... GGCTTCTTCGTCGTCTTGTAGTTCGTTGT 3032 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 40 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : ACAATAAAAGGCAGAGCAGCACGGAATTATCGTACG # Right flank : AGGCGAGGTGGTGAAGTTCCCTATCGTAGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 35-542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNO01000021.1 Prevotella denticola DNF00960 contig021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 35 47 100.0 30 ............................................... AACAAACAATGGCAAATAAACATCTATCCG 112 47 100.0 29 ............................................... CTGCAACTATGCGAAGTCGCTCAAGAACC 188 47 100.0 30 ............................................... GCAAAGTATCGAGCAGGAAGTACATATACT 265 47 100.0 30 ............................................... ACTCGTGGGTAAGGATAAGGACGGTATGCC 342 47 100.0 30 ............................................... CATCTCAGGCCAGAGGTAGCGGTCATCGTC 419 47 100.0 30 ............................................... TTCGCTTGCTTACAAACTTGATCAGGTGCT 496 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : ACAATTGTCCAGGAATACCCTTCCCAGACTCTATG # Right flank : TTCAGTTCGCCGTAATCTACGAACAGGAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 8-1192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNO01000016.1 Prevotella denticola DNF00960 contig016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 35 ..................................... TTTTGGTCTTTGCCTGCTTTGAAGCGATATGTTGA 80 37 100.0 31 ..................................... AACAAAAAGATTTGTAGTTGCTTGCAACAAT 148 37 100.0 36 ..................................... AAATATAGACGAAGTGTTGCATTTAACGCAACGGTT 221 37 100.0 35 ..................................... GTTAAATGTAAACAAGCAAGCGAGTATTAACGATG 293 37 100.0 38 ..................................... TGCTACACTTGATATCCTTCAAGAGGATGTTGCAAGTG 368 37 100.0 34 ..................................... CTGTTGTTGAACTTAGGAACTTTCTTAGAGTTCT 439 37 100.0 34 ..................................... CGAGTTTCACTTAGTGTTGACAAACCTATTCGGG 510 37 100.0 35 ..................................... TATTTGGTATTGCTCTTTCTTATAGTTTTGCAATT 582 37 100.0 37 ..................................... AAAGATAAATAACTATGAATACAAAAAGAACTTTAAG 656 37 100.0 34 ..................................... ACTTCAATTAAATGTTCGACACAATTAGCATTTA 727 37 100.0 34 ..................................... TCATTAATAGATGCACAAGATATAACAGATTGTT 798 37 100.0 32 ..................................... AATTAGCATTTAAGTTTCGGCAATAAGCTGAG 867 37 100.0 36 ..................................... TTAAGTTTCGGCAATAAGCTGAGCAGCACTTTCTTG 940 37 100.0 35 ..................................... ATGGTGCTCATCTTGATATCCTTCAAGAGGATGTT 1012 37 100.0 37 ..................................... AGCTTGCAGCCCCTTTGGTAGTGAATGTCCACACACC 1086 37 100.0 33 ..................................... AAATAATAAAATATGGAAAGAAAGACGTTAGCA 1156 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 100.0 35 GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Left flank : TTTGCATG # Right flank : GAGTAAAGACTTGTATTCCTTTATATGCCGCAGCCCCATGCGTGTAAGACCTAAAAATGCTTGAGGAATTAAGAGAAATTAACCATATTCCAAGCGAGTGCAAAGGTACGAAAAACTGTGCAGAAAGTCAAAGATCGATGCGTTAAATATTCTTTATGGAGGAAGCATTGCTGCCGCTTTCCCACATGGGGAGGACATCCTTCCCTGTTGTAGAAGGTATCCTCGCTGCCATCTTCAGAAGAACAATGTGTTGCGCGAACGGATGATGACATCTATGCTGATGTCTTCACCGATGATCTGCATTGCCCGGATCTGATCGGTGGAGACAGGACAGACGATGATGCTGTCGTGGTTGTCGTAAAGCGACTGCACCTCGGCAAGGTCGCTTTTAATTTCATCGTAGACGCTCTTGTCGAGGTCGGCAAGGAAGATGGAACGCTGGATGCGTGTGCATCCTTTCCGTTCCAGGTATTTTGCGATATGATAGCGTACCTTGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 103440-104022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNO01000016.1 Prevotella denticola DNF00960 contig016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 103440 47 100.0 29 ............................................... TTTCCGTGTATCTGTAAGTATTCTATTAC 103516 47 100.0 30 ............................................... CTTCGCCTAATAGTAACCCTTTCACGTTTT 103593 47 100.0 30 ............................................... TGGCAGCAGATATTCATCAACCTCTTCGCT 103670 47 100.0 29 ............................................... ACCCTCTATAGGTACTCTTACTCATGAGG 103746 47 100.0 29 ............................................... AGCGTGGAGATTTCCTCCTCGTACTTGCT 103822 47 100.0 30 ............................................... GTATCATGTGATTTAATCCATAGATCACTC 103899 47 100.0 30 ............................................... GCCCTTGTGCAGCTTCAAGAACTCGTTAAC 103976 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : AGTGTCTTGCTGTATAGGATAGTGACTGGATTGAACCGGCCTTTCCTGCAGATGTGCTGATGCCAGGCACTTATGGAGTTGCCGACAGACACCGGGCGTGTTGATGGCCCGTACCATGCCATATATTGCCGGGAGGGGAGCCAACTTGCAGCTGGCGAAGAGCTGTGCCGGCAGAACTTATTTCATCAGGAGATTACTTTTCCGAAGACAATGCGGAATGGTCTGTTCAAAAGAGATTGCACAGGGGGATCATGCTGTTTGAGTTTTATCGGACAGCATTCAATAAACATAAGTGCAGGAAACGGAGATAATTTATGGATTCGGCAAACGGTCATCCCTTCGCAGCAAGCCTATACGCTCTACGCAGCAGCCAACTACGCATTCAACTGAAAGCCAGCTACGCATTCAACTGAAAGCCAGGAATAAATCTGTAAGGCAGCAGGCAAGACTGACCAAAAGTCAAAACACGAGTTTAGGTTTACAAAGTCGTCCGTTTGGTG # Right flank : CTACAGGATGATAGTGTATTTTGTGCTATCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 36-1080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNO01000022.1 Prevotella denticola DNF00960 contig022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 36 47 100.0 30 ............................................... CTATAATCGTTATACTGATGAGACGCTTTA 113 47 100.0 30 ............................................... CACACCGCCCGAAGTGTATCGCGTCTTCTT 190 47 100.0 29 ............................................... CTCGTCGTAACAGATGGCGCAGAGGAAGG 266 47 100.0 30 ............................................... TTACACTCACTCTGACCGGCAACCCGGCCT 343 47 100.0 30 ............................................... GTAGTCTCTTCAGTCTTCTTAACAGCATCA 420 47 100.0 30 ............................................... CTTGAACATCTGCTCTCCATACTTAGACTG 497 47 100.0 30 ............................................... TGTATCAGGGTCGAGGACACTTTGTCCAAA 574 47 100.0 29 ............................................... TTTACCAAGCTGCGCAGAATTCAAACGGT 650 47 100.0 30 ............................................... CGAACCGCCTGCAGCAATCGCAGGCGCAAC 727 47 100.0 30 ............................................... GTAATTTCTCGACTACTGCCGGGTAAATGT 804 47 100.0 29 ............................................... TTCACAAGGAAATGGTCAGCCTTGAAAGG 880 47 100.0 30 ............................................... GCCGCTTCATCTATAAGCGTGTAGAATTTG 957 47 100.0 30 ............................................... CACTCTGCTTTGAACGACGAATAGAAGTAG 1034 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : ACAATAAAGTCGCGGAGGTACTCATGGAGCCATAGG # Right flank : TTGAAAATAAGTATTGCTCTGATTCTCAGTTAGTAACATTGTCTTTGTGCAAAATAAAAACTGCAATCTAAAAGAGTCCTATTGGTAATGATAGGACTCTTTTTCTTTTAGAATAATTCAAGTTGCTGCCCAGGAGCGTTGGGTGTTTGTGCCTGTGCCCCACAAAAAAGCTCTATCTCACCAAACTGTTTGTCTGTAATAACCATAATGCAAACATTGCCAGAATTAGGCATAAAAGACTTTACTCGCTTCACATGTACATCCGCATTCTCTCTGCTTGCACAATGACGAACATAGATTGATAATTGAAACATAGTAAATCCATCTTTCATCAAATCTTTCCGGAAAATAGTATAAGCACGCTTTTCCTTGTTTGTATTAGTTGGAAGATCGAAAAAGACCATCACCCACATAACCCTATATTCGCTAAGTCGTTGCATCAAAGAAAAGAAGGATAAGAGATTTCACGAACTTCCCCATTATAGCACTTCGCAAGACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //