Array 1 182242-179349 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWLN01000003.1 Klebsiella pneumoniae strain VRCO0292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182241 29 100.0 32 ............................. GCGATCATGCCGTAGTCTTCGATCACGTAATC 182180 29 100.0 32 ............................. TTTGCCTTCCTGTCTGCAGAGGCGCGGACAGG 182119 29 100.0 32 ............................. CGTAGCTAAAATTAACTGCATTCGGCGCACCT 182058 29 100.0 32 ............................. CCAGCTCAATTTCCGCCTGTCCCGCCAGCGCC 181997 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181936 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181875 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181814 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 181753 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 181692 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 181631 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181570 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181509 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181448 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181387 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 181326 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181265 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181204 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181143 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181082 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 181021 29 96.6 32 .G........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 180960 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 180899 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 180838 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 180777 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 180716 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 180655 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 180594 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 180533 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 180472 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 180411 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 180350 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 180289 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 180228 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 180167 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 180106 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 180045 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 179984 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 179923 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 179862 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 179801 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 179740 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 179679 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 179618 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 179557 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 179496 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179435 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179377 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCACGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-332 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWLN01000033.1 Klebsiella pneumoniae strain VRCO0292, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 60 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 121 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 182 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 243 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 304 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : A # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //