Array 1 14312-12193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGZ010000041.1 Clostridium saccharobutylicum strain DJ117 NODE_41_length_29758_cov_43.795458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 14311 30 100.0 36 .............................. CTCAACTGACTAAATGTAAAATCAGAATACCTTGAA 14245 30 100.0 34 .............................. TGATGAAATATGCACTAAGAGGATTTGATTGATA 14181 30 100.0 36 .............................. ATAACAACTAAAGTCTGATGTTCTTTACCCAAGTCA 14115 30 100.0 36 .............................. TTGATGGAACAATGGGCAATTGATTTAGGATTAACC 14049 30 100.0 35 .............................. AGTATAAATACGTTTCATTCTAATAATAGTTACGT 13984 30 100.0 37 .............................. GATATTTTAATATTTGCGATTCTTATTTTCTTTATGA 13917 30 100.0 35 .............................. ACGAACTGAATTACCTGACCTTACAAAAGTGAGTC 13852 30 100.0 34 .............................. ATTCTATTCTCTTGAGTTTTATCTATTTCTAAAT 13788 30 100.0 36 .............................. ACAGAAAAAGAAAATCCACTAACAGAGCAACCATAA 13722 30 100.0 35 .............................. TATGTTTTATCATATGTTCAACCTCACTTTTACTA 13657 30 100.0 35 .............................. CTACCACTTTTTGTATAACATATAGTAACATGAGT 13592 30 100.0 36 .............................. AACATAATAATAATTTCCTCCTTAAATTAAATTTGC 13526 30 100.0 35 .............................. GCTAATTTTAAATAAATATCAACATTTCCGGAATA 13461 30 100.0 34 .............................. TTAGGAATTACCATGTAGAATTTACCACCATTAT 13397 30 100.0 36 .............................. GTTTTAGTATCAGTTTTAGTGTTTGTATCAGTAAAA 13331 30 100.0 36 .............................. AAAGCTTCTTAAAATCTACTTAAATATGCCTACCTT 13265 30 100.0 35 .............................. ATATAAAAGGTCAAGATGGAAAAATTAACTGTTGG 13200 30 100.0 35 .............................. TTCTGATAATGTTAAGTTTAAGTCTGTTGCACAAG 13135 30 100.0 34 .............................. GAAGGAGCAGGGTCACTTGGATTATCAGTTTTCG 13071 30 100.0 36 .............................. TACATTGATTTAAAAGATGATGAAATTAATATAGTT 13005 30 100.0 35 .............................. CTCATCATTTATCACCTCTCTATTTTAAATACTTT 12940 30 100.0 35 .............................. TTTGCATCGAATCCAAGTTGAGTAAATCCATCTAT 12875 30 100.0 36 .............................. TGTAGATAATAGTTTAGTACGAGCAAAAAGAATAAA 12809 30 100.0 35 .............................. TTCCATCTATTTGTAATACACTAGCATTAGCTGGA 12744 30 100.0 36 .............................. ATCTACAATAGATAACTTAAGCCCAAGTAACTATGT 12678 30 100.0 34 .............................. TTGTATAAAAAAAAGAAGACTAAAACAAATCAAA 12614 30 100.0 37 .............................. AACCATAAGATACCTATGTATCCAAAAGGCGGTTTAA 12547 30 100.0 35 .............................. GCAGTAATTACACTCTTTGGTAATAACTTTAACCT 12482 30 100.0 36 .............................. TTATTTGAAATATCTATACCTTTCATTATTCATCTT 12416 30 100.0 34 .............................. TATTTAATAAGCTTATCTATAACTGGCTCAAAGT 12352 30 100.0 36 .............................. AAATTAGCCAATATAGCAAACAGAAAAGGAAGAAAT 12286 30 100.0 34 .............................. AGTAAGCCATGGGGTAGCTACAGAGTAAGTGTAG 12222 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AATTCATTCCTTTTAGTTTAAAGGAGGGAATGTAGTGAGTAAAGTTAGTAATTATAATTATGCTTTTGTATTTTATGATGTCAATGAAAAACGAGTACAAAGGGTTTTTAAAGTTTGCAAAAAATACTTATCTCATTTTCAAAAATCAGTATTTAGAGGAGAAATGTCTCCTTCAAAGCTAATAAAGTTTAAAACAGATTTAAATAAAGTTATTGACAAAAATGAAGATTTCATTTGCATAATTAAGTTAATGAACGACAATGTATTTGGAGAAGAAGTATTAGGTGTAACATCGGGAGCAAATGGTGAGGATTTAATAATATAATTTACCAGGCAAAAACAAATTTATATCTACGAAAAACAAGGTGTAATGCGGATTAACATAAATATATTTAAAAAATTAATTTAAGTTGAGGGTGCTTGGTAAATTTTTAAGGATGTGTTACACTAACTATAATGAAAGCATTATCTTAATATAAGAAGTGGCTTTTTTCTTAGGG # Right flank : TTATCTAAAACATACTTGTGCTTTGTATAATTTAAAGACTAACATTAACTATGATGAAACCAATTGTAAAAGACATATTGTTTTTAGCATAAAAATCAGAAGAGGCAACTGAAAATGTATGGTAGTAATTATGGATTTAATAGATACATTAAGAGTAAGCTTAGAGAATTTAGGATTTAAATTTACGTAAAATTATGAATTAAAAAATAAATAGCAAATTATAAAATCGCATTATTCAAGAATGAAACAGCAACCTTTTTAATTTATTGCGTCAGTTGCCTTGTATTAAGAAAGGATGCATTTGCAATTTGGTAATATTACGTTATTCGTTACATGGAAAGTTTACAATTATTTACACAACATGTAGACTTGGCGCGGTAAACAAACATTGTTCTTTGATAAATAAGCACTATAATATTTACAAAATATGCTATAATTGATTGAAAGATAGTAATTTGTATGAGCGATTATATGAGGAGATGTATTATGATTAAAAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 3695-3825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGZ010000034.1 Clostridium saccharobutylicum strain DJ117 NODE_34_length_51471_cov_40.926704, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =============================== ================== 3695 23 95.7 31 .................G..... ACTACCAGTACCTGTACCGAAGCCTCCGGCG 3749 23 100.0 31 ....................... GCCACCAGTGCCTGTACCAAAACCACCTGCA 3803 23 95.7 0 ................G...... | ========== ====== ====== ====== ======================= =============================== ================== 3 23 97.1 32 CCCATTCCGCTTCCTGAACCAAA # Left flank : CTAATTCTACCTCTGCACCTAATTCTTCCGTTCCCATTAAAGCTTCCTTAACAAGAATTTCTGAATTACTCATTTTTCTTCCACATGTTAATCCTAATATTTTCATATAATTTCTCCTTACATATAATATATTTATGAATATTGTTTTTACTCACTTTTTGAATTATATCAATTTATTTGTATTCTAATAAGTTATTTTTACCTTTAGATCAAAAAAACTAATTTTCTTAACATATGTACTCGTTATCAATTAAGTTATATACTTAATGAAATAAACTACCATATATAACTTATATAAAAAATTAACGACGATTTTACTTGTTGCATTTCACTTTAAAAACATTTTTATAATATTATTGTTTAATTTTCTGTATATAAAAAAGGATATGAATATAAATTCACATCCTATAATAAGCTTAATTTACTCGTAGTACAATCTATTTCTTTTATTTACAGTACTACTCCCATTTCTTGTATTTGTGCCTGTGCTTCCTCCTGTA # Right flank : AGCCACCAGTACCTGTAGAACCTCCAGTAGTTGTTCCTGTGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCAGTAGTTGTTCCCATGCCACCTTTTAGCAATTGAGATGCACCACTATTTTGCCAATTTTGAACTTGGTTAATTGCTTCTTGAGGAGTTTTTCCTAATCCAACAAGCACTCCCATCAAAGTAATCCTCTGATATAAACGTTGCATGTCAGTTCCCTGTGTACCCATGGTACTTCCCTGTGTACCCATGGTACTTTGATTACTTTCTCTTAAAGCATAACTGACTAATGGAGTAATATACCTAATCCAATCATCTGGAGTAAATTTTGATGTATCTTGCTTTGCTTGCCTGTTCATGGACATGAAGAAATCATTCACATCATAGTTATCCGAAAGTATTCCTACTATAGGTGCATTATCAAGAATTTCAGCCATACCATGA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCATTCCGCTTCCTGAACCAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 259723-259895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGZ010000005.1 Clostridium saccharobutylicum strain DJ117 NODE_5_length_262104_cov_68.453526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 259723 35 100.0 34 ................................... TGATAGTGCATTTTTGGGTTGTGTTGGTTTAACG 259792 35 97.1 34 .....................G............. GGCTTCTGCATTTACTTACTGTATGGGATTAACG 259861 35 94.3 0 ...........T...G................... | ========== ====== ====== ====== =================================== ================================== ================== 3 35 97.1 34 TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Left flank : CAGCAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTATGGAAGTTCCCTTGATGTAACAACAGATGCAGGACAAGCACCAGGAATAAACAGTGTTTCAGTAACTCCAGCAACTTCAAGTGTAGAGCAAGGTCATACTGAACAATTGACAGCAACAGTAGATGCAACAGGAGGAGCAGATCAAAGTGTAACTTGGTCAAGCAGTGATACAAATAATAAAGTAACAGTAGATGCAAATGGTTTAGTATCAGTAGCAGCAGATGCACAGCCAGGAGACTATACAATAACAGCTACATCAACAGTAGATGGAACTAAGAAAGGAACAGCAACATTAACAGTACATGGATTTAAATTTGCATTAAATGGAAATGAGTGTCAAATAACTGGGTATACAGGGACAAGTACAGACATTACAATACCATCTCAAATTGGTGGGAAGAGTGTAACAAGTATAGGTAATTATGCATTTAATGATTGTATTAACTTAATA # Right flank : GGACTTCTGCATTTAGTTATATTAATAATGATGCAATATTCTATGTACCTGATTTGGCTAGAGCAGGATATGTTCAGTCATATAAGACAAATAGTAATAATATACAAATTATTTTGCCATCAGTTCCTTTAACGTTAGGTCAAAAAACAGCAACAACAGCAACAGTATCGTTTCCAGCACAAACAGGAGCGACTTCAGTAAAGCTGCAACAATCGGCAGATGGAGGAACTACTTGGAGTGATGCAGCAACAGGAGCGTTAGATGCTTCATCAACAAGTGCAACTGTAACAGGATTAACAGTAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTACGGAAGTTCCCTTGATGTAACAACGGATACAGCGGCAACGACAGCATACACAGTAGCAGCGGCGGCAGCAAGTTCATCACCAACAGCAGGAGTAGATAACGTAGTTACATTAACTGTGAAGGATTCAACTGGCAGCACAGATACAACCTTCACT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 157508-158649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGZ010000007.1 Clostridium saccharobutylicum strain DJ117 NODE_7_length_227342_cov_54.375702, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 157508 30 100.0 36 .............................. AATAGAACTTGCTAAAAGGTTAGGAGTTGCTAAAAG 157574 30 100.0 36 .............................. AATTAAGTGATGAAAGAATAGAAGAAAAAGAAGTTG 157640 30 100.0 35 .............................. GAAGGTAATGAAAGCATTTCACTCAACTGACTAAA 157705 30 100.0 35 .............................. GCTAGTAATGAAGATGATGATGTAGACACTACTAA 157770 30 100.0 36 .............................. ATAGGTGATAAGGATTATTCTATTTCTAGCAGTTGG 157836 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 157900 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 157965 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 158031 30 100.0 35 .............................. GATTTAATGGAAATTTAGATGAACTTTCTGTATTA 158096 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 158162 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 158228 30 100.0 35 .............................. GCAAATGGAACAGATGTACTTGATGAAGAATATGA 158293 30 100.0 35 .............................. GCACATTTATTCAAAACCATTTGTATAGCATTTTT 158358 30 96.7 35 ..C........................... TGACCTACTACGTTTTCATGACTCCCCACCATGAT 158423 30 96.7 35 ........C..................... AGTGCTGTAGACATTTCCCCAATTACTAAAAGAAT 158488 30 100.0 36 .............................. TTGTCTAATTTTTTTATTCCTGGTATTTCAGTTATT 158554 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 158620 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.6 35 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTACTATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : TATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //