Array 1 163555-161891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAX01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N19978 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163554 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 163493 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 163432 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163371 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 163304 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 163243 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 163182 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 163121 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 163060 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162999 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162938 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162877 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162816 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162755 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162694 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 162633 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162572 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162511 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162450 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162347 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162286 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162225 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162164 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162103 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162042 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161981 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161920 29 96.6 0 A............................ | A [161893] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180938-179812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAX01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N19978 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180937 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 180876 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 180815 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180754 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180693 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180632 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180571 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180510 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180449 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180388 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180327 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180266 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180205 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180144 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180083 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 180022 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179961 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179900 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179839 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //