Array 1 64184-62079 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABKX010000003.1 Moraxella catarrhalis strain AS012772 AS012772_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 64183 28 100.0 32 ............................ TTTGTCTGTTAAGCTTTGATTAAGTGTGTTAA 64123 28 100.0 32 ............................ CAAACGGTGGGGTCTCATACCTCATCAATCCG 64063 28 100.0 32 ............................ AGTCGTCGAAGCGTGGCTTGTCGCTGTCGGTA 64003 28 100.0 32 ............................ AATTGCCAATCTTGGCACAATTGAAAGCAACA 63943 28 100.0 6 ............................ TGATTT Deletion [63910] 63909 28 100.0 33 ............................ TGATAAGATATCAAGCACTTTATCAGCGTCTGC 63848 28 100.0 32 ............................ TTGCTAAGCCGATGCCTGATACAATGCCGCCA 63788 28 100.0 32 ............................ TGCCCCTGCAGCGATTAGCCCAGCATTGCCTA 63728 28 100.0 33 ............................ CGCAAAATCAGACACGCCATTATTACTTGCTAA 63667 28 100.0 32 ............................ CATAAAGTATCATCACATTCACTTGAAATTGA 63607 28 100.0 32 ............................ AGTTGTTTATTATTGATGGCTTTGGTATAGGG 63547 28 100.0 32 ............................ AATGTTGGTTTTTTGAGTGCGTTTTTCGCCGT 63487 28 100.0 32 ............................ ACGACGGTCGAACAGGTATTCGCTGCGTGAAA 63427 28 96.4 32 ..............G............. GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 63367 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 63307 28 100.0 32 ............................ AAGGTAATTTAAACGCAAATTCAGGCGTGTTC 63247 28 100.0 32 ............................ AATGGGGTGAAACATTACTTTAGAGACAATAC 63187 28 100.0 32 ............................ TATGAGCCAATTAGACTGCTCGCTGGGCAACC 63127 28 100.0 32 ............................ AATTTTGCCTGCCATACGGTCAAGGGTGATTT 63067 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 63007 28 96.4 32 ..............G............. GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 62947 28 100.0 32 ............................ AGTTTACGAGCGTATTCAAGAGCTTTCTAAGC 62887 28 96.4 32 ...T........................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 62827 28 100.0 32 ............................ GCACAGCTTGCAAATAAAGCAAGCACGGCAAC 62767 28 100.0 32 ............................ AGAGCTGACCGCCCATTGGGTTTTTAGCACAT 62707 28 100.0 32 ............................ TAAAGGTGTTGGCAATGTTACTTATCATAAAT 62647 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 62587 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 62527 28 100.0 32 ............................ CGTAGCATTCAACGCATCAATCGTATTTTTGA 62467 28 100.0 32 ............................ TTTGCCATAAATCTCACGCACGGACTGCCGTC 62407 28 96.4 92 .........................C.. CGCCACTTGGGCAGTGGGTGGCTGAATCATGGTAATTATTTGGCGTATGGTTTGTAGAAACGCCACTTGGGCAGTGGGTGGCTTGGCTTGTT 62287 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 62227 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 62166 28 96.4 32 .....T...................... TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 62106 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================ ================== 35 28 99.5 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGACGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //