Array 1 272816-273290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEA01000012.1 Pasteurella multocida subsp. multocida strain ATTK contig000012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================= ================== 272816 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 272882 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 272948 36 80.6 71 .............................NNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGGTAGGCACTTCGATGACCTCAGAG 273055 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 273121 36 80.6 32 .............................NNNNNNN NNNATGGCTGTAGTACTTTATACCACCTCAGC 273189 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 273255 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================= ================== 7 36 94.5 37 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : TTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACTGTTATTTTTGTGGCTCTCATTTCGCAGTGCTACAATATACATGCTAATCAATTTGATAAGGCTGGAGTTGTAGTTCCCTCTCTCATTTCGCAGTGNNNNNNNNNNCCAAGAGTTAACTTATAGATGACCAAGAGGTTGTAGTTCCCTCTCTCATTTCGCANNNNNNNNNNGTAGATAAAAGTTAAATTCATTGAGTTTA # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGNNNNNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 99418-99684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEA01000026.1 Pasteurella multocida subsp. multocida strain ATTK contig000026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 99418 28 100.0 32 ............................ CTTCCAATTCTTAGCGTTCTGTTTTGAGTACA 99478 28 100.0 31 ............................ TGGATGCGCTCTCTAATTCCAAAGCGACTTG 99537 28 100.0 32 ............................ TCACGGTGCTAATCACTAAGCCAATTTTAGCA 99597 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 99657 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTATAGGCAGCTTAGAAAAGACGGATTCCCTGTTTGGCAAGAATATTTTGGTTAACTGCCGTATAGGCAGCTTAGAAATTTGTGAGAATCTATTAGAGAATGGGTCTGANNNNNNNNNNTTAACTGCCGTATAGGCAGCTTAGAAAAAACAGGGAATCCGTCTGGTGCGGTCCACGCTGTTAACTGCCGTATAGGCAGCTTAGAAAGACTACCTACTGTTCACCTACCGTTCACCTNNNNNNNNNNGTTAACTGCCGTATAGGCAGCTTAGAAACAAATTGGGGCGCATACACAATTTCACAACAAGTTAACTGCCGTATAGGCAGCTTAGAAATATACGGCAGTTAACGAAGGAAGGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA # Right flank : AAAAGCTTGTCCGAGCTTTAAAGCAGACGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTAACTGCCGTATAGGCAGCTTAGAAATAGCTGTTTTGGTTGAGTTTTTTATCGGCTACGTTAACTGCCGTATAGGCAGCTTAGAAAATAGGGACGCTTGCGGTTTATGGATTTTTTATGTTAACTGCCGTATAGGCAGCTTAGAAAAAGTTGTTATATTAAGCATGAAGAAATGAAACGTTAACTGCCCGTGTAGGCAGCTTAGAAAAGTCTGTTATTGATTTTCTCAAGCGTTATTTCGTTAACTGCCGTATAGGCAGTTTCAATTGACTGTTGGTATATTACTAAAACAGTTGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 99885-100152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEA01000026.1 Pasteurella multocida subsp. multocida strain ATTK contig000026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 99885 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 99945 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 100005 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 100065 28 96.4 31 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTT C [100072] 100126 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTAACTGCCGTATAGGCAGCTTAGAAACTTCCAATTCTTAGCGTTCTGTTTTGAGTACAGTTAACTGCCGTATAGGCAGCTTAGAAATGGATGCGCTCTCTAATTCCAAAGCGACTTGGTTAACTGCCGTATAGGCAGCTTAGAAATCACGGTGCTAATCACTAAGCCAATTTTAGCAGTTAACTGCCGTATAGGCAGCTTAGAAAAGGGACAACCTACCATATCACGCTGGGTCCCCGTTAACTGCCGTATAGGCAGCTTAGAAAAAAGCTTGTCCGAGCTTTAAAGCAGACGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15850-16569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEA01000006.1 Pasteurella multocida subsp. multocida strain ATTK contig000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 15850 28 100.0 41 ............................ TTTAATGTGGTCACTAAGTTATCAGAATGACNNNNNNNNNN 15919 28 100.0 38 ............................ TTAGGCAACATAAAGATAACTTAATGGTNNNNNNNNNN 15985 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 16045 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 16105 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 16165 28 100.0 40 ............................ GAAAGCCATACGTTTAATCAATGACTCAATNNNNNNNNNN 16233 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 16293 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 16353 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 16413 28 100.0 41 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAANNNNNNNNNNTG 16482 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 16542 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================= ================== 12 28 100.0 35 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAGGTTCACCATCGTGTAGATGGCTTAGAAATCTAATAGGAAAATAAAAACATGAAACAACAAGTTCACCATCGTGTAGATGGCTTAGAAAAATTAAACTATTGAAACTTTGAGTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCACCATCGTGTAGATGGCTTAGAAACTGGGGATTGACGATAGGTGAACGATGAGGGT # Right flank : ATCTTGGTTGTTGTAAATTGTGGTTGTTAAGNNNNNNNNNNCACCATCGTGTAGATGGCTTAGAAATTTCCACCGACTTCTAAAAGTAAGCGAACTGTGTTCACCATCGTGTAGATGGCTTAGAAAAGACGTGTATTAAACAGATAAAGACTAAGAAAGTTCACCATCGTGTAGATGGCTTAGAAAAATTAATAGGAAAATAAAACATGAAGCAGCACGTTCACCATCGTGTAGATGGCTTAGAAATAGCTACTTTCTATTAGTTGTCTTATAGCCACGTTCACCATCGTGTAGATGGCTTAGAAAATAATGACCACTAAAAGACAACTATTTATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATCGTGTAGATGGCTTAGAAATTTCCCGCTAATAGGTTTACCGTAAACTAAATGTTCACCATCGTGTAGATGGCTTAGAAATTTTATTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 16970-17177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEA01000006.1 Pasteurella multocida subsp. multocida strain ATTK contig000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16970 28 89.3 32 NNN......................... TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 17030 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 17090 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 17150 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : NNNNNNNNNNTGGTTCACCATCGTGTAGATGGCTTAGAAATAATGACCACTAAAAAGGTAATTACCCATCATGTTCACCATCGTGTAGATGGCTTAGAAATCTTGGTTGTTGTAAATTGTGGTTGTTAAGNNNNNNNNNNCACCATCGTGTAGATGGCTTAGAAATTTCCACCGACTTCTAAAAGTAAGCGAACTGTGTTCACCATCGTGTAGATGGCTTAGAAAAGACGTGTATTAAACAGATAAAGACTAAGAAAGTTCACCATCGTGTAGATGGCTTAGAAAAATTAATAGGAAAATAAAACATGAAGCAGCACGTTCACCATCGTGTAGATGGCTTAGAAATAGCTACTTTCTATTAGTTGTCTTATAGCCACGTTCACCATCGTGTAGATGGCTTAGAAAATAATGACCACTAAAAGACAACTATTTATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 67292-67143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEA01000006.1 Pasteurella multocida subsp. multocida strain ATTK contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67291 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 67231 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 67170 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : | # Right flank : NNNNNNNNNNGTGCGGTATAAATTTTCAACGTTTATACCGCACTTTTTTAGTAGCCTGTCAATTGTCAACTTTACGGCTTGTAAATGGTTTCTACCCCTTCTTCGTCTTCTTCTGACCAATCATCCCAATCCTCGTCTTCATCCTCGAACTGATGATCCGCTAATTGTGCTTGGTGGTAATCATCCCATTTAAATTTCACTTCTGCCTCGTCCGCCGTTTGCTCAACTTCGTGACGTGGATTTGCTTCAATAAAGTCCATAATATCACGACAAAGTGGCTGTACATTTTTGCCTGTTACTGCAGAAATGAGGTAATAGTCGTCATCCCAGCCTAAGCGTTCAGTAATCGCTTGCGCACGCTCGTATGCCTCTTCATCACTCATGGTGTCAATTTTATTAAACACTAACCAGCGTGGCTTATCCGCCAGGGCTTCACTGTATTGAAATAATTCTGATTCAATGATCGAGATATTCTCTGCAGGCTCACTCTCATCAATAGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //