Array 1 129804-130193 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBW01000008.1 Enterobacter roggenkampii strain 1-RC-17-04017 1_RC_17_04017_S23_R1_001_contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 129804 28 100.0 32 ............................ AGTGACAAGGATTTCTTTGAACGCCTTGAGAA 129864 28 100.0 33 ............................ TGTAGAGATAAAGGCGGCCAACCCGGCCAGCAA 129925 28 100.0 33 ............................ TACAAAGGCCGTCGATGCCGTCTGTGTGTTGCT 129986 28 100.0 32 ............................ GTCACACGGTGTCAGTGATGCGTCGACAACGA 130046 28 100.0 32 ............................ AGAGACGAGGCTGAACGGCTTATCTCCTGCAT 130106 28 100.0 32 ............................ AGCTCATCCGAAAAGACATGGGCTTGGCAATC 130166 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATCGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTCATCGGCTCGCTGGCAGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGGTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGAGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : CGGAGGGGAAGCCATTACCCGGCAAAACCCTTGTTCACTGCCGTACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 71670-71040 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBW01000014.1 Enterobacter roggenkampii strain 1-RC-17-04017 1_RC_17_04017_S23_R1_001_contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 71669 28 100.0 32 ............................ TTCCCGTCAGCTCCACGAAACGGAGCCCATAA 71609 28 100.0 32 ............................ TGGCCGCCGCGAACATCCTCCCGGATGAAACT 71549 28 100.0 32 ............................ CGAGTGGGCACGAAAACAGGATATGTACGTAT 71489 28 100.0 33 ............................ CATGCTTATAAAGCCTCTTGTCGTCAAAATCCA 71428 28 100.0 32 ............................ TCCAAAAACGGTATCCGCTATCCGTTCATTAA 71368 28 100.0 32 ............................ ACGCAGCGCGAGCCAATTCCTCCTGTTTCCTT 71308 28 100.0 32 ............................ AAGCGCCTGGCGGGCGCAGAATTCATCACTGC 71248 28 100.0 33 ............................ ATTCTGTATCAGCCGGATAAGTATCACCTGGAA 71187 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 71127 28 82.1 31 A...A......C...C......C..... ATAGAAAATAAGGCCTAACAGTTCTCGCACC C [71102] 71067 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 95.8 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCAGGGTGGGTGGAATCGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTCAGAGAAGATTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : CTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGATTAACCCGACCTTTTAAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 82454-81223 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBW01000014.1 Enterobacter roggenkampii strain 1-RC-17-04017 1_RC_17_04017_S23_R1_001_contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 82453 28 100.0 32 ............................ TCCGATATATACTGGATATGCATACAGTAGTT 82393 28 100.0 33 ............................ AGCTCATGCAGTTGCAGCAGGTGCCAGCCAACA 82332 28 100.0 32 ............................ TTCCGGCGCGTCAAATCATGAAACAGGCATTT 82272 28 100.0 32 ............................ GCCTGAGGTCAGCAGCCCGGTCATCGGGTTCT 82212 28 100.0 32 ............................ CTCCAAATCGCGCGTCGAATAGCCCGCTAACT 82152 28 100.0 33 ............................ TCTACCGTTGCCGCTACCACTGGAACATAGAAT 82091 28 100.0 32 ............................ TTCCTGCATTATCACTGCGCTGTCAGTCGAGC 82031 28 100.0 32 ............................ GGACGGGTTAATAACGCTTCCGGATGGCAAGG 81971 28 100.0 32 ............................ TGTCTGATTAGCCAGGACACGTACAGCGCCAA 81911 28 100.0 33 ............................ AGCTACCGGCGACTACACCCAAACCCGCGTTTA 81850 28 100.0 32 ............................ ATCGGGGACACCAACAACAAAGAACAGGTCGA 81790 28 100.0 32 ............................ AGCTGGGTTCCGGATCGGCAACAGCAACAGAC 81730 28 100.0 32 ............................ CAAAAGATACCACCGGCTCCGCTGATTCCGCG 81670 28 100.0 32 ............................ TGACGCTTGAAGAAAACCGCTCAATTAACGGC 81610 28 100.0 32 ............................ GGAACTGTCGGTTAATTCGGTTGAATGTGAAC 81550 28 100.0 32 ............................ TGACCAGCAAGCATTTCAGGGGTAACTGGCGG 81490 28 100.0 32 ............................ CCTTATACATGCTGTGTGGACCCTCCATGACC 81430 28 100.0 32 ............................ TGAATCGCCAGCTGAGCGTACTGGAAACCACC 81370 28 100.0 32 ............................ AAATGCAGGGCCATCAGCGCGGAAGCGGATAC 81310 28 100.0 32 ............................ ACCACGGCAACACTCTGCACGGAGCCGTCACG 81250 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CTCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGTTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGACACCGAAACGAAATGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGATCCCAATATGCTGCCGCACCTTACAGGGCTACTCCATGATATTGCGCATTCGATGGCTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAATTTGTGGCGTCGGTGACAGACCACCGTCGCCACTGGCTTGACCCTTTTTTTTGATGATTACGTAACTTATTGATTTATAGGATTCTAATTTACGAGTTAGAAAAAAGGGTTTTATGAGCGAAATTTGATTATTTTCTTTTCTAACAATAAGATGGCGTGGTTTCTTTTCA # Right flank : AAGGCCGCCAGGCTTTGATGCCATGGAAATGGCGTCGCTGCCACACGGAAAGCACAAGTAACAATCTCTCACAAATATTCACTGCGTCGATTTAAAAACGCAATACCATCATACCCACGCTCTCCATTTTCTGATTAAATAAAAATTCCATTCAGGAGTTAATTATATTGCTATTGATATATTATTTGTAAGAATGATACATCAAAGAAAAAAATAATTTTTTGTTTAATTATCACCGAAATTTCCATTCATTTGATATCTATCACATTTGCATTTGTCTTATCTCCGATAACATACGCGCATTCAACACTTTGAAATAAAAGCCGTTGCCATGCCTGCAAATAGCATCACCCCTACAGACTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 98490-97320 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBW01000014.1 Enterobacter roggenkampii strain 1-RC-17-04017 1_RC_17_04017_S23_R1_001_contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 98489 28 100.0 32 ............................ AGAGACGAGGCTGAACGGCTTATCTCCTGCAT 98429 28 100.0 32 ............................ AGCTCATCCGAAAAGACATGGGCTTGGCAATC 98369 28 100.0 32 ............................ CGGAGGGGAAGCCATTACCCGGCAAAACCCTT 98309 28 100.0 32 ............................ ACGCCCTGAGTGGCAGCACTATGCCAGTAAAC 98249 28 100.0 32 ............................ AATAGGCCGGAACATTAATTTCGTTGGATGGA 98189 28 100.0 32 ............................ AGGGTCGATCCACTCGCCGCCGATCGCCTTGT 98129 28 100.0 32 ............................ TGATTCGTGCAGCCTAGTCTATTCCGTATAGG 98069 28 100.0 33 ............................ TGGCAGACCAGGAACAAGCGCTTATACATTGGC 98008 28 100.0 32 ............................ ATGCTGCGGCCCTCGTTCGTGTCCTCATACTG 97948 28 100.0 32 ............................ TGAAAATCAAACTTGTAATAGAGGATTGCCCG 97888 28 100.0 32 ............................ TTCTGCATCGAGCCAGCGTACTGCGCCGAATC 97828 28 100.0 32 ............................ ATTGCGCGTAAGCCCTCAGCCGGGCGACCCGG 97768 28 100.0 32 ............................ TGGCGGCGGCTGAATTTTTGCCGCTGGCAAGC 97708 28 100.0 33 ............................ AGGCCCCGGAGCTGTACGGGCTAAACGTCGCGT 97647 28 100.0 32 ............................ CCAATTCCCGCCAGGCGCAGGAGGCCGCGGCA 97587 28 100.0 32 ............................ TCTGTAACGCTTTCGGGCTTACGGCATAGCAC 97527 28 100.0 32 ............................ GTTCAATTTCCATAACACGGTGCCCTTGGCGA 97467 28 100.0 32 ............................ AAACGTGGCTTCATCATCAGAGACTTTGAACG 97407 28 100.0 32 ............................ TGTGCAATCCTTTCAGGATTTCGATCACTTCA 97347 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACAGGCAGCTTAGAAAGTCACACGGTGTCAGTGATGCGTCGACAACG # Right flank : GCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGTACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGTTTTCACTTCTTCTTCGACGATAGCCATGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //