Array 1 64499-63614 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LECO01000031.1 Escherichia coli strain PARC444 339, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=============================	==================================	==================
     64498	    29	 100.0	    32	.............................	TGGCAGATCGATTTTACCGCCAGAATGACAGG  	
     64437	    29	 100.0	    32	.............................	ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC  	
     64376	    29	 100.0	    32	.............................	GTCCATGGCCTGACGAAGCTCGTAATATTTTG  	
     64315	    29	 100.0	    32	.............................	ACGACCAAATGATCTACGCGTATTGCCACCTC  	
     64254	    29	 100.0	    32	.............................	TTAGGCACAGAAAAAAGGCTACTCAGCGAACT  	
     64193	    29	 100.0	    32	.............................	TATCGACCCCCTTTCTCACGCATCGCCATCGT  	
     64132	    29	 100.0	    32	.............................	TTAACGTCTGGATCCTGTGTGCCATGGACCGT  	
     64071	    29	 100.0	    32	.............................	ATCAGGTAATCGAGACACCTGTCAGCACTCTC  	
     64010	    29	  96.6	    32	............................C	CCAGCGCCAGACGGGAACACAATTTTAAAGCC  	
     63949	    29	 100.0	    32	.............................	TTGTCGGGGATCTGTTCAAACTGACTCATTAG  	
     63888	    29	 100.0	    34	.............................	GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC	
     63825	    29	 100.0	    32	.............................	CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG  	
     63764	    29	 100.0	    32	.............................	TCGCTATTGCCGGTAGTGTCGCTGATAGACTC  	
     63703	    29	 100.0	    32	.............................	CGGCTATGGAATTTATGGAGAAGTTTGGTTTT  	
     63642	    29	  96.6	     0	............T................	|                                 	
==========	======	======	======	=============================	==================================	==================
        15	    29	  99.5	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                  	       

# Left flank :   GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank :  GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//