Array 1 61359-62116 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQT01000012.1 Bacillus pumilus strain LLTC96 NODE_12_length_88784_cov_64.5004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 61359 32 100.0 35 ................................ CGATCGATGTAACGACGCAGCCTGACAAGACCTGG 61426 32 100.0 35 ................................ AATTCGGCTTCTATTTTCAATCTTTCGTTATTCGT 61493 32 100.0 34 ................................ ATTGCATCAACCCAGCGATCACGATAATTGCCAT 61559 32 100.0 35 ................................ TTGTGCCGTCCTAGGCAATGAAATACCCGCTTTTC 61626 32 96.9 33 ...........A.................... GATATTCCGTGCTTTGATTAATGCATAATAAGG 61691 32 100.0 34 ................................ TTTTATTGTGTTATCTTTAGTGAATTTTCTCATT 61757 32 96.9 33 .......................A........ CTGCGCATGTCGCAACCATCCTTTTTAGTCGTG 61822 32 96.9 34 ...........A.................... GACACCGAACAAACATTCTGTTAAAATGTTTTTG 61888 32 96.9 34 .............A.................. TAAAACGGTAATACCATACTTGATCAACGTCAAT 61954 32 93.8 33 ....T..............T............ ATGTATCCAGAAATCATCGACTTTCTAATTTGT 62019 32 100.0 34 ................................ GTGATCGGCACGAGACCCACGTGCATATGGGGTG 62085 32 84.4 0 ...........T.......T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 12 32 97.1 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAAATAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGGGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTCATTCGACAAAATTGAGAATAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCT # Right flank : TTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGATATAGGTGTGAAAAACATAAATCTGTCTCAGCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAGTAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTTCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAGCAGGCAACATTTTATAAAACAAAGACAGTTGAGTCGCACTCTACATGAGTGCGTGGATTGAAATATGCAGTGACCTCCTGAATGTATGATGAATTGTTGTCGCACCCATATATGAGGTGCGC # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 70740-70975 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQT01000012.1 Bacillus pumilus strain LLTC96 NODE_12_length_88784_cov_64.5004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 70740 32 96.9 36 ...................A............ TAATGATGTGACCACTCATTTACCTCCCCCCTTACC 70808 32 100.0 36 ................................ TTTGAGATCGGCGACACCCTGCACGATCTCATCGGA 70876 32 100.0 36 ................................ ATCTGTTCTTTTGTAATACACTCTATACTGATTCAT 70944 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 99.2 36 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : TTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCCAATTTGGGCGGAGTTAGGTGAATACGAAACAAAAGTCGCACTCTACATGAGTGCGTGGATTGAAATATATTAATTTGAGTCAATACAATTGGCTTCTTTGTGTCGCACTCTATATGAGTGTGTGGATTAATAATTGTGAAAAACATAACTCTGCCTATCAGTAGTCATATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAAATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTGTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGCCGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TGTCTTGGATATCGAGATAGCGCAGTAACTCGTCGTTACACTCAACATAAGTGCATAGTTCACAGTTTCTGCGAATTACATAAATTCAAATATCTATCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCAACAAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGCTTGGCAATTTTCATAATTTCTGTGTCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //