Array 1 70296-68583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUU010000003.1 Listeria seeligeri strain FSL L7-1021 NODE_3_length_280021_cov_42.897572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 70295 29 100.0 36 ............................. TTGCTTCCGCTTGTAATCGTTCGAATCTCCATCAGT 70230 29 100.0 36 ............................. CGTCAATGGAGCGTTCCAAATCCGTAGCTCCTTGAC 70165 29 100.0 35 ............................. ACCAAAGAAGAAGTAGTTACGCCCGCATCGGAAGA 70101 29 100.0 36 ............................. ACTAGAAGGTGGAAAAACATATACCTTAGAAGAAAC 70036 29 100.0 34 ............................. TAAAGAGTATCTTCTGTTCTTGACCTGTCTCTGG 69973 29 100.0 36 ............................. AGCCTTCTTCTTCTAAGGTGAATTTTTCTGGTAGGT 69908 29 100.0 35 ............................. AAGTTCCCATGTTCATCTTCACTGATGGCTTCATT 69844 29 100.0 35 ............................. CTAGCTATTTCGGTAAACAATTGCATAGCTTCCGT 69780 29 100.0 36 ............................. ATTCCTGGGACTGATTATAGATGTAGATGTACAGCA 69715 29 100.0 36 ............................. GAAGAACTTCCACCAATATTTTCATCTGAGTATTCT 69650 29 100.0 37 ............................. AGAGATTACAGAGCAAAAGGATGCTTTAATCGCAGAA 69584 29 100.0 37 ............................. AATATTATATTGTGTAAAAATATCAGCTGTAGGTTCA 69518 29 100.0 33 ............................. TAGGCATGGTCGTTTCACTAATTGCAAGCTTTG 69456 29 100.0 35 ............................. TCCAGATCAAAGCAAATGGTATAAATAGAAGCACT 69392 29 100.0 37 ............................. GCTGCAGTATTATAAACAGTAGTTTCTGCTTCGCTTA 69326 29 100.0 34 ............................. TAATCTTCATCTAGTTTTATTCCCATCACCACAT 69263 29 96.6 37 ...........................C. TTTTTTGTCGGTCGCGATGAACAAGGGTTCTTTTTTT 69197 29 100.0 37 ............................. ACTAAATTATTTTATATGGGAGCATTAGATTTTATAA 69131 29 100.0 34 ............................. AAGCTTAAATCTGAAACATTCCAAGAACCATCCA 69068 29 100.0 37 ............................. ATATTAGATTCAAAAATTCCAATTACATTTTTCTCCG 69002 29 100.0 36 ............................. TCAACATCTGAACTCAAAGAAAAATTAGGGACTCCC 68937 29 100.0 35 ............................. CTTACAATGGCCGACAAAAAGAATTATTTATTTAC 68873 29 100.0 37 ............................. TAGTTCCTAGTTCTCTTTTTTCATCTGTAGTCAAAAC 68807 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 68742 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 68677 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 68611 29 69.0 0 A......C..T....CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 27 29 97.8 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TAATGAACGATAAAGAATATGAAGGCTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGATGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAATACTGGAGATCGACAGAAACGTGGGAAGCCTTGGGAGAGAAAGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGA # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGCATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 82514-80089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUU010000003.1 Listeria seeligeri strain FSL L7-1021 NODE_3_length_280021_cov_42.897572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 82513 29 100.0 37 ............................. CTATTTCGAAGGTAATTGACGATGGAAAATTTGTTCA 82447 29 100.0 34 ............................. CTTTGCAACTTCGTCTTGTTTCACTTTGTATTTT 82384 29 100.0 37 ............................. ACCTATTTTACGTTCTGTTGGGTAATTGATAACTAGT 82318 29 100.0 34 ............................. CCTGTGAGCTGTTTAACTAGTCCTTCGTCTAAAC 82255 29 100.0 37 ............................. ATGTATTTCGTATGCAAATATTGAATAGCGGATGTCG 82189 29 100.0 37 ............................. GTTAATGCCCTTTGTTTCCATTTCTTAGATTTCGAAG 82123 29 100.0 36 ............................. TCAGCTTAGTTGTTTCTGCCCATTCCTCGTTATAGC 82058 29 100.0 37 ............................. TAACTCACTTCCTCTTCATCTACAAATAGAGCACTAT 81992 29 100.0 35 ............................. AAAGTCAAATGGATCAAGTAGTTCTAAAAGTTATA 81928 29 100.0 36 ............................. CGCGTTGGATTGGGTCGCCCTGCGATTTTTGTTCAA 81863 29 100.0 35 ............................. GATTGTTGAATCGCTTTGATTAAATCTGCATTACT 81799 29 100.0 35 ............................. AAATATACGATCCATTCGCCGGCGCTTCTGTTCGG 81735 29 100.0 35 ............................. TGGCTAATCTTGATATTAGAAGCGTTGTCATCCTC 81671 29 100.0 35 ............................. ACACCATGATTATAATTTAATGCCATTGCATATTC 81607 29 100.0 36 ............................. CTTCGATGGTAGACTTGGCTGGTAACTTGGCTTCTT 81542 29 100.0 36 ............................. ACTTCTGCTAGAACATTACGTTTTAAGAATGTCTTT 81477 29 100.0 34 ............................. TATGGATGGGAGTCGGCTCAAGATGAGGCTAAAT 81414 29 100.0 34 ............................. ATAAAAACGGCATCCCATAAAATTCTCGTACGGT 81351 29 100.0 35 ............................. TCAATTAGCGCAAATATAAGCTTCACACCTGCGTC 81287 29 100.0 36 ............................. CGCCACTTCGCTATAAGCTCGATTTAGCGGGCGCAG 81222 29 100.0 37 ............................. AGGTAATCCCTGTTGTTAATCTGTATCAGGATTACCT 81156 29 100.0 36 ............................. ATCTTCTACCTTATGTTTTTTACCGCTAGAGTCTAA 81091 29 100.0 36 ............................. GCTTCAATAAAGCGATTTCTTTATCATGATCGTTTT 81026 29 100.0 37 ............................. GTATTCTAGCGCTTTGGGTGTGGTTACTTTAGTGATA 80960 29 100.0 36 ............................. GTATTAACAGAAGTATTTGATCGTTACGAAAAAACA 80895 29 100.0 37 ............................. AGCGCTGCATTTCGCTGGGGGCTCGAAAAGGGGGAAG 80829 29 100.0 37 ............................. AGAAGAAGCGCTAGCGCTACATACGCCCATTTATTAA 80763 29 100.0 34 ............................. CGCCTAAGCCCGCAATACAAAGCTAATTTAATCA 80700 29 100.0 36 ............................. GAGTTCTCGTCAAAGTAAAATTCACCTTCGCGTGTT 80635 29 100.0 35 ............................. AGATCAGAGACTATAACAGGCAGTAATGGTTCAAC 80571 29 100.0 37 ............................. ATATGTATCTTGCGAAAAAACATGTAGATTCATTACT 80505 29 100.0 35 ............................. GTTAGACGAATAGCAACTGGATATGCTTGTTCAAA 80441 29 100.0 36 ............................. TTCCTTATTTGCTTTCAGCTGCGCGTCAGAGGTCGT 80376 29 100.0 36 ............................. AGAAAAACGTCCCCTTCTTGATCCCAGTGCTTCAGC 80311 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 80247 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 80182 29 89.7 35 ..........T.............C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 80118 29 86.2 0 ........C....C..A...........G | T [80091] ========== ====== ====== ====== ============================= ===================================== ================== 38 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACAGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTTTTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAATAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTGTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGATGACAAAATGAGATTTAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATTGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 89344-88735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUU010000003.1 Listeria seeligeri strain FSL L7-1021 NODE_3_length_280021_cov_42.897572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 89343 29 100.0 36 ............................. TGTAGACGTTCAATGTGCGTGCGCCCTTACGTACTC 89278 29 100.0 36 ............................. TATCATATGCAGTAACTTCATCTAGCACATTAAACT 89213 29 100.0 35 ............................. CCTATCCATTTTTAACATTAGAACACGGATCGAAC 89149 29 100.0 37 ............................. GTATTTGCGTTGTTTGAGCTATTCGACACCGATGTCC 89083 29 100.0 35 ............................. GATGTTTATTCGTCTTCTTTTCATTCTCGTTATAT 89019 29 100.0 34 ............................. TTCAGAAACGTCTTTTTTTCTCATGCTCGACCTC 88956 29 100.0 36 ............................. TTTTTCCGAGCCATCATCACAAGCGCGGTTTTGAGT 88891 29 100.0 36 ............................. CTGTTTCCTTCTAGAAGCGAAAGGTGCGAGGCCTTC 88826 29 100.0 34 ............................. TTTGAAAATTCATGTGCGAATAAATATGTGCTTC 88763 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //